JOSS: https://github.com/maxibor/sam2lca
Score: 8.055157731819678
Last synced: about 14 hours ago
JSON representation
Repository metadata:
Lowest Common Ancestor from a SAM/BAM/CRAM alignment file
- Host: GitHub
- URL: https://github.com/maxibor/sam2lca
- Owner: maxibor
- License: gpl-3.0
- Created: 2019-10-21T13:43:21.000Z (over 6 years ago)
- Default Branch: master
- Last Pushed: 2024-08-23T09:52:35.000Z (almost 2 years ago)
- Last Synced: 2026-02-13T12:46:01.218Z (4 months ago)
- Language: Python
- Size: 95.5 MB
- Stars: 9
- Watchers: 1
- Forks: 4
- Open Issues: 1
-
Metadata Files:
- Readme: README.md
- Changelog: CHANGELOG.md
- License: LICENSE
Owner metadata:
- Name: Maxime Borry
- Login: maxibor
- Email:
- Kind: user
- Description: Bioinformatics Scientist
- Website: https://maximeborry.com
- Location: Mainz, Germany
- Twitter:
- Company:
- Icon url: https://avatars.githubusercontent.com/u/8630837?u=af363b81e959b72e28cb637e9d0c9040b14320d4&v=4
- Repositories: 147
- Last Synced at: 2026-02-28T19:51:25.981Z
- Profile URL: https://github.com/maxibor
GitHub Events
Total
- Total: 0
Last Year
- Total: 0
Committers metadata
Last synced: 3 months ago
Total Commits: 188
Total Committers: 3
Avg Commits per committer: 62.667
Development Distribution Score (DDS): 0.053
Commits in past year: 0
Committers in past year: 0
Avg Commits per committer in past year: 0.0
Development Distribution Score (DDS) in past year: 0.0
| Name | Commits | |
|---|---|---|
| maxibor | m****y@g****m | 178 |
| Alex Huebner | a****r@g****m | 9 |
| Francesco Asnicar | f****r@g****m | 1 |
Issue and Pull Request metadata
Last synced: 10 months ago
Total issues: 7
Total pull requests: 9
Average time to close issues: 11 days
Average time to close pull requests: 6 days
Total issue authors: 6
Total pull request authors: 4
Average comments per issue: 2.57
Average comments per pull request: 0.67
Merged pull request: 6
Bot issues: 0
Bot pull requests: 0
Past year issues: 0
Past year pull requests: 0
Past year average time to close issues: N/A
Past year average time to close pull requests: N/A
Past year issue authors: 0
Past year pull request authors: 0
Past year average comments per issue: 0
Past year average comments per pull request: 0
Past year merged pull request: 0
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- alexhbnr (2)
- wyc661217 (1)
- marouenbg (1)
- jfy133 (1)
- ZoePochon (1)
Top Pull Request Authors
- alexhbnr (6)
- maxibor (1)
- kdm9 (1)
- fasnicar (1)
Top Issue Labels
Top Pull Request Labels
Package metadata
- Total packages: 1
-
Total downloads:
- pypi: 103 last-month
- Total dependent packages: 0
- Total dependent repositories: 1
- Total versions: 14
- Total maintainers: 1
pypi.org: sam2lca
Lowest Common Ancestor on SAM/BAM/CRAM alignment files
- Homepage: https://github.com/maxibor/sam2lca
- Documentation: https://sam2lca.readthedocs.io/
- Licenses: GNU-GPLv3
- Latest release: 1.1.4 (published over 2 years ago)
- Last Synced: 2026-03-13T21:00:36.351Z (3 months ago)
- Versions: 14
- Dependent Packages: 0
- Dependent Repositories: 1
- Downloads: 103 Last month
-
Rankings:
- Dependent packages count: 10.108%
- Forks count: 15.37%
- Average: 17.927%
- Stargazers count: 19.377%
- Dependent repos count: 21.581%
- Downloads: 23.199%
- Maintainers (1)
Dependencies
- click *
- numpy *
- pandas *
- pysam *
- python-rocksdb *
- scipy *
- taxopy *
- tqdm *
- xopen *
- actions/checkout v3 composite
- actions/setup-python v3 composite
- pypa/gh-action-pypi-publish release/v1 composite
- actions/checkout v2 composite
- conda-incubator/setup-miniconda v2 composite