https://github.com/meenakshi-kushwaha/mmaqshiny
R-Shiny package to explore Air-Pollution Mobile Monitoring data
Last synced: 22 Aug 2026
https://github.com/rajeshrinet/pystokes
PyStokes: phoresis and Stokesian hydrodynamics in Python. github.com/rajeshrinet/pystokes
active-colloids active-particles autophoretic-suspensions colloids crystallization cython force-fields hydrodynamic-interactions phase-separation phoretic-interactions pystokes python stokes-flow stokesian-hydrodynamics traction
Last synced: 22 Aug 2026
https://github.com/sap218/jabberwocky
NLP toolkit for those nonsensical ontologies
annotation grep jabberwocky metadata ontology plotting python synonyms text-mining textual-data tfidf
Last synced: 22 Aug 2026
https://github.com/lab-cosmo/chemiscope
An interactive structure/property explorer for materials and molecules
hacktoberfest materials-science molecule visualization web
Last synced: 22 Aug 2026
https://github.com/drwaseemsheikh/audiometry
Audiometry is an application framework written in C# and based on WPF and .NET that enables accurate digital recording, search, analysis, graphical visualization, and reproduction of human audio-vestibular impairment test data to assist in hearing loss or disability diagnosis.
audiometry csharp hearing-tests visualizing-data wpf
Last synced: 22 Aug 2026
https://github.com/ropensci/chirps
API Client for CHIRPS
chirps climatology precipitation-data rstats
Last synced: 22 Aug 2026
https://github.com/ihrke/pypillometry
Pupillometry and eyetracking with python
data data-analysis eye-tracking eyetracking pupillometry
Last synced: 22 Aug 2026
https://github.com/hrwakeford/ExoTiC-ISM
This is a repository for the reduction pipeline detailed in Wakeford, et al., 2016, ApJ. The method implements marginalization across a series of models to represent stochastic models for observatory and instrument systematics. This is primarily for HST WFC3, however, may be extended to STIS in the future.
Last synced: 22 Aug 2026
https://github.com/vsoch/gridtest
grid parameters and testing for Python modules and functions
gridtest testing yaml
Last synced: 22 Aug 2026
https://github.com/cmstatr/cmstatr
An R Package for Statistical Analysis of Composite Material Data
composite-material-data cran data materials-science r statistical-analysis statistics
Last synced: 22 Aug 2026
https://github.com/edwardoughton/itmlogic
Longley-Rice Irregular Terrain Model (itmlogic)
Last synced: 22 Aug 2026
https://github.com/TomKellyGenetics/graphsim
R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)
benchmarking gene-expression gene-regulatory-networks genetics genomic-data-analysis genomics graph-algorithms igraph-networks joss ngs-analysis package r-stats simulated-data simulation-modeling
Last synced: 22 Aug 2026
https://github.com/snowformatics/macrobot
Macrobot is an open source image analysis software for studying plant-pathogen interactions on macroscopic level.
computer-vision image-analysis plant-pathogen-interactions python
Last synced: 22 Aug 2026
https://github.com/danhey/maelstrom
Forward modelling of pulsating stars in binaries
asteroseismology astronomy astrophysics bayesian-inference binaries mcmc pymc3
Last synced: 22 Aug 2026
https://github.com/BrianAronson/birankr
CRAN package for estimating various rank (centrality) measures of nodes in bipartite graphs (two-mode networks).
Last synced: 22 Aug 2026
https://github.com/covid19datahub/COVID19/
A worldwide epidemiological database for COVID-19 at fine-grained spatial resolution
2019-ncov coronavirus covid-19 covid-data covid19-data r
Last synced: 22 Aug 2026
https://gricad-gitlab.univ-grenoble-alpes.fr/ttk/spam/
Software for Practical Analysis of Materials
Last synced: 22 Aug 2026
https://gitlab.com/datafold-dev/datafold/
Python software for identifying dynamical systems and hidden patterns from time series data
Manifold Learning data-driven diffusion maps dynamic mode decomposition dynamical system koopman operator machine learning time series
Last synced: 22 Aug 2026
https://github.com/gee-community/geemap
A Python package for interactive geospatial analysis and visualization with Google Earth Engine.
colab data-science dataviz earth-engine earthengine folium geospatial gis google-earth-engine image-processing ipyleaflet ipywidgets jupyter jupyter-notebook landsat mapping python remote-sensing streamlit streamlit-webapp
Last synced: 22 Aug 2026
https://github.com/humanfactors/FIPS
The Fatigue Impairment Prediction Suite. An R package for running biomathematical models of fatigue.
biomathematics fatigue human-factors modeling r rstats simulation
Last synced: 22 Aug 2026
https://github.com/JonasRieger/ldaPrototype
Determine a Prototype from a number of runs of Latent Dirichlet Allocation.
latent-dirichlet-allocation lda model-selection modelselection reliability text-mining textdata topic-model topic-models topic-similarities topicmodeling topicmodelling
Last synced: 22 Aug 2026
https://github.com/darioizzo/dcgp
Implementation of a differentiable CGP (Cartesian Genetic Programming)
Last synced: 22 Aug 2026
https://github.com/r-spatial/rgee
Google Earth Engine for R
earth-engine earthengine google-earth-engine googleearthengine r spatial-analysis spatial-data
Last synced: 22 Aug 2026
https://github.com/rgerum/pylustrator
Visualisations of data are at the core of every publication of scientific research results. They have to be as clear as possible to facilitate the communication of research. As data can have different formats and shapes, the visualisations often have to be adapted to reflect the data as well as possible. We developed Pylustrator, an interface to directly edit python generated matplotlib graphs to finalize them for publication. Therefore, subplots can be resized and dragged around by the mouse, text and annotations can be added. The changes can be saved to the initial plot file as python code.
code-generation gui interactive matplotlib visualisation
Last synced: 22 Aug 2026
https://github.com/donaldRwilliams/BGGM
Bayesian Gaussian Graphical Models
bayes-factors bayesian-hypothesis-testing gaussian-graphical-models
Last synced: 22 Aug 2026
https://github.com/csdms/bmi
The Basic Model Interface is a set of functions for coupling models to models and models to data
bmi c csdms cxx fortran geosciences interface java javascript julia numerical-modeling python
Last synced: 22 Aug 2026
https://github.com/rhenanbartels/hrv
A Python package for heart rate variability analysis
data-science hacktoberfest hrv python signal-processing
Last synced: 22 Aug 2026
https://github.com/keurfonluu/toughio
Pre- and post-processing Python library for TOUGH
io postprocessing preprocessing tough2 tough3
Last synced: 22 Aug 2026
https://github.com/zdelrosario/py_grama
Implementation of a grammar of model analysis
uq
Last synced: 22 Aug 2026
https://github.com/ur-whitelab/hoomd-tf/
A plugin that allows the use of Tensorflow in Hoomd-Blue for GPU-accelerated ML+MD
machine-learning molecular-dynamics tensorflow
Last synced: 22 Aug 2026
https://github.com/adbar/htmldate
Fast and robust date extraction from web pages, with Python or on the command-line
date date-parser datetime digital-forensics entity-extraction forensics-tools information-extraction metadata metadata-extraction natural-language-processing nlp opengraph web-scraping webscraping
Last synced: 22 Aug 2026
https://github.com/swiftsim/swiftsimio
Python library for reading SWIFT data. Uses unyt and h5py.
astrophysics cosmology hdf5 particle simulation sph
Last synced: 22 Aug 2026
https://github.com/berenslab/MorphoPy
A Python package for feature extraction of neural morphologies
Last synced: 22 Aug 2026
https://github.com/stemangiola/tidyHeatmap
Draw heatmap simply using a tidy data frame
brewer complexheatmap custom-palette dplyr graphviz heatmap mtcars plotting r rstudio scale tibble tidy tidy-data-frame tidybulk tidyverse viridis
Last synced: 22 Aug 2026
https://github.com/aiidateam/kiwipy
A python messaging library for RPC, task queues and broadcasts
python rabbitmq
Last synced: 22 Aug 2026
https://github.com/ECSHackWeek/impedance.py
A Python package for working with electrochemical impedance data
battery corrosion electrochemistry fuel-cell impedance lithium-ion
Last synced: 22 Aug 2026
https://github.com/pyswmm/pyswmm
Python Wrappers for SWMM
hydraulic-modeling hydrology-stormwater-analysis python stormwater swmm swmm5
Last synced: 22 Aug 2026
https://github.com/ynop/audiomate
Python library for handling audio datasets.
audio audio-datasets corpus-tools data-loader dataset-creation dataset-filtering dataset-manager music noise speech speech-recognition
Last synced: 22 Aug 2026
https://github.com/NicolasHug/Surprise
A Python scikit for building and analyzing recommender systems
factorization machine-learning matrix recommendation recommender svd systems
Last synced: 22 Aug 2026
https://github.com/afeinstein20/stella
For characterizing flares with convolutional neural networks
Last synced: 22 Aug 2026
https://github.com/sambit-giri/tools21cm
21-cm-cosmology 21-cm-powerspectrum cosmic-dawn epoch-of-reionization reionization
Last synced: 22 Aug 2026
https://github.com/cicirello/Chips-n-Salsa
A Java library of Customizable, Hybridizable, Iterative, Parallel, Stochastic, and Self-Adaptive Local Search Algorithms
adaptive discrete-optimization evolutionary-computation genetic-algorithm hbss hill-climbing java local-search metaheuristics multithreading mutation optimization parallel-computing permutations randomized-heuristics scheduling search-algorithm simulated-annealing stochastic-sampling vbss
Last synced: 22 Aug 2026
https://github.com/dms-view/dms-view.github.io
Interactive visualization of mutational antigenic profiling data
Last synced: 22 Aug 2026
https://github.com/Sulstice/cocktail-shaker
A peptide string building for expanding chemical dataset combinations.
Last synced: 22 Aug 2026
https://github.com/hope-data-science/tidyfst
Tidy Verbs for Fast Data Manipulation
Last synced: 22 Aug 2026
https://github.com/cadop/seg1d
Automated segmentation of one-dimensional (1D) data
clustering motion-capture python segmentation time-series-analysis
Last synced: 22 Aug 2026
https://github.com/pfizer-opensource/sit2standpy
Python based module framework for detecting sit-to-stand transitions
Last synced: 22 Aug 2026
https://github.com/kinnala/scikit-fem
Simple finite element assemblers
fem pde python
Last synced: 22 Aug 2026
https://github.com/akcochrane/TEfits
R package for streamlined nonlinear regression
Last synced: 22 Aug 2026
https://github.com/DorianDepriester/mtex2Gmsh
Matlab toolbox for generating 2D meshes from EBSD data
crystal-plasticity ebsd fem mesh numerical-simulations polycrystal
Last synced: 22 Aug 2026
https://gitlab.com/utopia-project/dantro
dantro is a python package for handling, transforming, and visualizing hierarchically organized data. Integrated into data-intensive projects, it supplies an easy way to define a customizable, configuration-based data processing pipeline. See [utopya](https://gitlab.com/utopia-project/utopya) for an example.
data processing pipeline h5py matplotlib numpy python utopia-project xarray yaml
Last synced: 22 Aug 2026
https://gitlab.dune-project.org/dorie/dorie
Solver for the Richards Equation and passive solute transport. NOTE: This repository was recently migrated. Beware of dead links!
Last synced: 22 Aug 2026
https://github.com/sjvrijn/mf2
Collection of Multi-Fidelity benchmark functions
benchmark-functions benchmark-suite benchmarking-suite multi-fidelity python
Last synced: 22 Aug 2026
https://github.com/gridap/Gridap.jl
Grid-based approximation of partial differential equations in Julia
finite-elements gridap julia numerical-methods partial-differential-equations pdes
Last synced: 22 Aug 2026
https://github.com/kerkelae/disimpy
Massively parallel Monte Carlo diffusion MR simulator written in Python.
cuda diffusion-mri gpu-computing monte-carlo-simulation
Last synced: 22 Aug 2026
https://github.com/biboyd/SALSA
Salsa is a Python package for constructing synthetic absorber catalogs from astrophysical hydrodynamic simulations
Last synced: 22 Aug 2026
https://github.com/ghersi-lab/neep
A tool to perform high-throughput survival analysis on splice variants
Last synced: 22 Aug 2026
https://github.com/YoungFaithful/CapacityExpansion.jl
Capacity Expansion Problem Formulation for Julia
california capacity-expansion-planning clustering energy energy-optimization-model germany julia jump
Last synced: 22 Aug 2026
https://github.com/ginkgo-project/ginkgo
Numerical linear algebra software package
cuda dpcpp gpu-computing hip hpc krylov-methods linear-algebra oneapi openmp preconditioning sparse-linear-systems spmv
Last synced: 22 Aug 2026
https://github.com/matchms/matchms
Python library for processing (tandem) mass spectrometry data and for computing spectral similarities.
analysis fuzzy-matching fuzzy-search mass-spectrometry metabolomics python3 similarity-measures
Last synced: 22 Aug 2026
https://github.com/LightForm-group/xrdfit
Fitting of peaks from SXRD experiment for single and dual-phase Zr and Ti alloys.
Last synced: 22 Aug 2026
https://github.com/ronikobrosly/causal-curve
A python package with tools to perform causal inference using observational data when the treatment of interest is continuous.
Last synced: 22 Aug 2026
https://gitlab.com/davidtourigny/dynamic-fba
dFBA dynamic FBA dynamic flux-balance analysis
Last synced: 22 Aug 2026
https://github.com/euroargodev/argopy
A python library for Argo data beginners and experts
argo argo-data argo-floats oceanography python
Last synced: 22 Aug 2026
https://gitlab.com/utopia-project/utopia
Utopia is a comprehensive modelling framework for complex adaptive systems.
C++ complex systems complex-adaptive-systems hdf5 modelling python simulation simulation-framework utopia-project
Last synced: 22 Aug 2026
https://github.com/qMRLab/qMRLab
Quantitative MRI Made Easy with qMRLab: MRI software for data Simulation, analysis and visualization
analysis data-simulation magnetic-resonance-imaging magnetization mapping mri qmri quantitative quantitative-mri relaxometry
Last synced: 22 Aug 2026
https://github.com/pyomeca/pyomeca/
Python toolbox for biomechanics analysis
biomechanics biomechanics-analysis dynamics kinematics kinetics python xarray
Last synced: 22 Aug 2026
https://github.com/MikeHeiber/Excimontec
Excimontec is an open-source KMC simulation software package for modeling the optoelectronic processes in organic semiconductor materials and devices, such as OPVs, OLEDs, and more.
kinetic-monte-carlo mpi organic-semiconductors
Last synced: 22 Aug 2026
https://github.com/teamPSG/kNN_Sleep_Scorer_kNNSS
A matlab package for automated sleep scoring using the k-nearest neighbors algorithm
Last synced: 22 Aug 2026
https://github.com/actris-cloudnet/cloudnetpy
Python package for Cloudnet data processing
Last synced: 22 Aug 2026
https://github.com/CFSAN-Biostatistics/SeroTools
A toolkit and repository for the White-Kauffmann-Le Minor scheme for Salmonella serotyping.
Last synced: 22 Aug 2026
https://github.com/kegiljarhus/pyBEMT
Implementation of the Blade Element Momentum Theory for turbines and propellers in Python
Last synced: 22 Aug 2026
https://github.com/flintproject/Flint
A simulator for biological and physiological models
biology cellml ode phml physiology sbml sde simulator
Last synced: 22 Aug 2026
https://bitbucket.org/miketuri/perl-spice-sim-seus/
The Perl SEUS (Scripts for Easier Use of Spice) Package includes a number of files for more easily/efficiently running Spice (specifically, ngspice)
Last synced: 22 Aug 2026
https://github.com/jeffcsauer/arcos_arcospy_information
This is an informational landing page for the R arcos and Python arcospy software
Last synced: 22 Aug 2026
https://github.com/google/caliban
Research workflows made easy, locally and in the Cloud.
ai-platform docker google-cloud python3 research-tool
Last synced: 22 Aug 2026
https://github.com/joglekara/VlaPy
1D-1V Vlasov-Poisson(-Fokker-Planck), Plasma Physics PDE Simulation Tool in NumPy and experiment management in MLFlow
numerical-methods plasma-physics python tests vlasov
Last synced: 22 Aug 2026
https://github.com/JamesPaynter/PyGRB
Gamma-ray burst analysis library
astrophysics gamma-ray-astronomy gamma-ray-burst
Last synced: 22 Aug 2026
https://github.com/CliMA/Oceananigans.jl
🌊 Julia software for fast, friendly, flexible, ocean-flavored fluid dynamics on CPUs and GPUs
climate climate-change data-assimilation fluid-dynamics gpu julia machine-learning ocean
Last synced: 22 Aug 2026
https://github.com/mpievolbio-scicomp/cancer_sim
CancerSim: A python3 package for stochastic cancer simulation in 2D.
cancer division mutation-profiles sampling simulation stochastic tumours
Last synced: 22 Aug 2026
https://gitlab.com/cosmograil/PyCS3
PyCS for python 3
time series time-delay cosmography time-delay measurements
Last synced: 22 Aug 2026
https://github.com/tlverse/hal9001
🤠📿 The Highly Adaptive Lasso
cross-validation lasso-regression machine-learning-algorithms nonparametric-regression
Last synced: 22 Aug 2026
https://github.com/bblodfon/emba
Ensemble Model Biomarker Analysis R package
biomarkers ensemble-models r r-package
Last synced: 22 Aug 2026
https://github.com/bethgelab/foolbox
A Python toolbox to create adversarial examples that fool neural networks in PyTorch, TensorFlow, and JAX
adversarial-attacks adversarial-examples jax keras machine-learning python pytorch tensorflow
Last synced: 22 Aug 2026
https://github.com/htjb/maxsmooth
Constrained Derivative Function Optimisation
astrophysics maths optimisation optimisation-algorithms physics science
Last synced: 22 Aug 2026
https://github.com/czbiohub-sf/cerebra
A tool for fast and accurate summarizing of variant calling format (VCF) files
genomics mutations scrna-seq variant-calling
Last synced: 22 Aug 2026
https://github.com/wilsonrljr/sysidentpy
A Python Package For System Identification Using NARMAX Models
data-science dynamical-systems machine-learning narmax narx system-identification time-series
Last synced: 22 Aug 2026
https://github.com/jannikmi/multivar_horner
python package implementing a multivariate Horner scheme for efficiently evaluating multivariate polynomials
evaluation factorization horner horner-scheme hornerscheme-solver math mathematics multivariate multivariate-polynomials polynomial polynomial-evaluation polynomials python python3
Last synced: 22 Aug 2026
https://github.com/s-goldman/Dusty-Evolved-Star-Kit
SED-fitting python package for fitting evolved stars
Last synced: 22 Aug 2026
https://github.com/brainglobe/brainglobe-atlasapi
A Python interface to access neuroanatomical atlases
atlases brain microscopy neuroscience python registration visualisation
Last synced: 22 Aug 2026
https://github.com/upb-lea/openmodelica-microgrid-gym
OpenModelica Microgrid Gym (OMG): An OpenAI Gym Environment for Microgrids
control electrical-engineering energy-system-modeling engineering machine-learning microgrid modelica openai-gym openai-gym-environments openmodelica power-electronics power-supply power-systems python reinforcement-learning simulation smart-grids
Last synced: 22 Aug 2026
https://github.com/nhejazi/txshift
:package: R/txshift: Efficient Estimation of the Causal Effects of Stochastic Interventions, with Corrections for Outcome-Dependent Sampling
causal-effects causal-inference censored-data machine-learning robust-statistics statistics stochastic-interventions stochastic-treatment-regimes targeted-learning treatment-effects variable-importance
Last synced: 22 Aug 2026
https://github.com/ropensci/medrxivr
Access and search medRxiv and bioRxiv preprint data
bibliographic-database biorxiv evidence-synthesis medrxiv-data peer-reviewed preprint-records r r-package rstats systematic-reviews
Last synced: 22 Aug 2026