JOSS: https://gitlab.com/davidtourigny/dynamic-fba
dFBA dynamic FBA dynamic flux-balance analysis
Score: 8.501063809486354
Last synced: about 3 hours ago
JSON representation
Repository metadata:
- Host: gitlab.com
- URL: https://gitlab.com/davidtourigny/dynamic-fba
- Owner: davidtourigny
- License: gpl-3.0+
- Created: 2018-12-29T14:10:10.951Z (over 7 years ago)
- Default Branch: main
- Last Synced: 2026-01-01T05:10:53.894Z (6 months ago)
- Topics: dFBA, dynamic FBA, dynamic flux-balance analysis
- Stars: 8
- Forks: 5
- Open Issues: 16
Committers metadata
Last synced: 3 months ago
Total Commits: 363
Total Committers: 5
Avg Commits per committer: 72.6
Development Distribution Score (DDS): 0.521
Commits in past year: 0
Committers in past year: 0
Avg Commits per committer in past year: 0.0
Development Distribution Score (DDS) in past year: 0.0
| Name | Commits | |
|---|---|---|
| davidtourigny | d****y@g****m | 174 |
| carrascomj | c****j@g****m | 86 |
| Midnighter | m****r@p****t | 65 |
| Moritz E. Beber | m****b@b****k | 35 |
| yannikschaelte | y****e@g****m | 3 |
Issue and Pull Request metadata
Last synced: 3 months ago
Package metadata
- Total packages: 2
-
Total downloads:
- pypi: 34 last-month
- Total dependent packages: 0 (may contain duplicates)
- Total dependent repositories: 5 (may contain duplicates)
- Total versions: 8
- Total maintainers: 2
pypi.org: dfba
Object-oriented software for dynamic flux-balance simulations.
- Homepage: https://gitlab.com/davidtourigny/dynamic-fba
- Documentation: https://dfba.readthedocs.io/
- Licenses: GNU GPL v3+
- Latest release: 0.1.8 (published almost 6 years ago)
- Last Synced: 2026-04-03T09:02:40.753Z (3 months ago)
- Versions: 7
- Dependent Packages: 0
- Dependent Repositories: 5
- Downloads: 34 Last month
-
Rankings:
- Dependent repos count: 6.602%
- Dependent packages count: 10.126%
- Average: 14.942%
- Forks count: 19.143%
- Stargazers count: 19.368%
- Downloads: 19.473%
- Maintainers (2)
conda-forge.org: dfba
This project provides an object-oriented software package for dynamic flux-balance analysis (DFBA) simulations using implementations of the direct method or Algorithm 1 described in the paper Harwood et al., 2016. The main algorithms for solving embedded LP problems are written in C++ and use the GNU Linear Programming Kit (GLPK) and the Suite of Nonlinear and Differential/Algebraic Equation Solvers (SUNDIALS) CVODE or IDA. Extension modules to cobrapy are provided for easy generation and simulation of DFBA models.
- Homepage: https://dynamic-fba.readthedocs.io
- Licenses: GPL-3.0-or-later
- Latest release: 0.1.8 (published about 5 years ago)
- Last Synced: 2026-04-01T15:11:05.342Z (3 months ago)
- Versions: 1
- Dependent Packages: 0
- Dependent Repositories: 0
-
Rankings:
- Dependent repos count: 34.025%
- Average: 48.007%
- Dependent packages count: 51.175%
- Stargazers count: 52.643%
- Forks count: 54.185%
Dependencies
- ipykernel *
- nbsphinx >=0.5.0
- pygments >=2.4.1
- sphinx-autoapi >=1.2.1
- sphinx-copybutton >=0.2.6
- sphinx-material *