JOSS: https://github.com/czbiohub-sf/cerebra
genomics mutations scrna-seq variant-calling
Score: 5.648974238161206
Last synced: about 3 hours ago
JSON representation
Repository metadata:
A tool for fast and accurate summarizing of variant calling format (VCF) files
- Host: GitHub
- URL: https://github.com/czbiohub-sf/cerebra
- Owner: czbiohub-sf
- License: mit
- Archived: true
- Created: 2019-04-10T19:25:11.000Z (about 7 years ago)
- Default Branch: master
- Last Pushed: 2022-12-27T15:39:05.000Z (over 3 years ago)
- Last Synced: 2026-01-12T05:08:00.832Z (5 months ago)
- Topics: genomics, mutations, scrna-seq, variant-calling
- Language: Python
- Homepage:
- Size: 164 MB
- Stars: 61
- Watchers: 3
- Forks: 9
- Open Issues: 10
-
Metadata Files:
- Readme: README.md
- Contributing: docs/CONTRIBUTING.md
- License: LICENSE
Owner metadata:
- Name: Chan Zuckerberg Biohub San Francisco
- Login: czbiohub-sf
- Email:
- Kind: organization
- Description:
- Website: https://www.czbiohub.org/sf/
- Location: San Francisco
- Twitter:
- Company:
- Icon url: https://avatars.githubusercontent.com/u/28747162?v=4
- Repositories: 1
- Last Synced at: 2023-06-12T17:52:45.067Z
- Profile URL: https://github.com/czbiohub-sf
GitHub Events
Total
- Watch event: 1
- Total: 1
Last Year
- Watch event: 1
- Total: 1
Committers metadata
Last synced: 8 months ago
Total Commits: 761
Total Committers: 4
Avg Commits per committer: 190.25
Development Distribution Score (DDS): 0.494
Commits in past year: 0
Committers in past year: 0
Avg Commits per committer in past year: 0.0
Development Distribution Score (DDS) in past year: 0.0
| Name | Commits | |
|---|---|---|
| Lincoln Harris | l****s@c****g | 385 |
| Lincoln Harris | 3****s | 298 |
| Rohan Vanheusden | r****n@g****m | 74 |
| Olga Botvinnik | o****k@c****g | 4 |
Issue and Pull Request metadata
Last synced: 10 months ago
Total issues: 50
Total pull requests: 49
Average time to close issues: 2 months
Average time to close pull requests: 4 days
Total issue authors: 5
Total pull request authors: 3
Average comments per issue: 1.78
Average comments per pull request: 0.98
Merged pull request: 37
Bot issues: 0
Bot pull requests: 2
Past year issues: 0
Past year pull requests: 0
Past year average time to close issues: N/A
Past year average time to close pull requests: N/A
Past year issue authors: 0
Past year pull request authors: 0
Past year average comments per issue: 0
Past year average comments per pull request: 0
Past year merged pull request: 0
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- lincoln-harris (33)
- afrubin (6)
- rvanheusden (5)
- betteridiot (5)
- not-rs (1)
Top Pull Request Authors
- lincoln-harris (44)
- olgabot (3)
- dependabot[bot] (2)
Top Issue Labels
- enhancement (8)
- bug (5)
- question (3)
- wontfix (1)
- help wanted (1)
Top Pull Request Labels
- dependencies (2)
- enhancement (1)
Dependencies
- biopython ==1.77
- click *
- cython ==0.29.13
- hgvs *
- ncls *
- numpy *
- pandas *
- pathos *
- pyfaidx *
- setuptools >=38.6.0
- tqdm *
- vcfpy *
- biopython ==1.77
- click ==7.0
- cython ==0.29.13
- hgvs ==1.4.0
- ncls ==0.0.51
- numpy ==1.18.1
- pandas ==0.25.3
- pathos ==0.2.5
- pyfaidx ==0.5.6
- setuptools ==47.3.1
- tqdm ==4.42.0
- vcfpy ==0.12.1
- coverage * test
- flake8 * test
- pytest * test
- ca-certificates 2020.6.24
- certifi 2020.6.20
- libcxx 10.0.0
- libedit 3.1.20191231
- libffi 3.3
- ncurses 6.2
- openssl 1.1.1g
- pip 20.1.1
- python 3.7.7
- readline 8.0
- setuptools 49.2.0
- sqlite 3.32.3
- tk 8.6.10
- wheel 0.34.2
- xz 5.2.5
- zlib 1.2.11
- ubuntu latest build