JOSS: https://github.com/TomKellyGenetics/graphsim
benchmarking gene-expression gene-regulatory-networks genetics genomic-data-analysis genomics graph-algorithms igraph-networks joss ngs-analysis package r-stats simulated-data simulation-modeling
Score: 14.324704851834914
Last synced: about 4 hours ago
JSON representation
Repository metadata:
R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)
- Host: GitHub
- URL: https://github.com/TomKellyGenetics/graphsim
- Owner: TomKellyGenetics
- License: gpl-3.0
- Created: 2016-09-05T06:49:01.000Z (almost 10 years ago)
- Default Branch: master
- Last Pushed: 2025-05-12T21:59:19.000Z (about 1 year ago)
- Last Synced: 2026-06-18T21:04:16.948Z (4 days ago)
- Topics: benchmarking, gene-expression, gene-regulatory-networks, genetics, genomic-data-analysis, genomics, graph-algorithms, igraph-networks, joss, ngs-analysis, package, r-stats, simulated-data, simulation-modeling
- Language: HTML
- Homepage:
- Size: 35.8 MB
- Stars: 25
- Watchers: 4
- Forks: 7
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- Changelog: NEWS.md
- Contributing: CONTRIBUTING.md
- License: LICENSE
- Code of conduct: CODE_OF_CONDUCT.md
- Citation: CITATION.cff
Owner metadata:
- Name: Tom Kelly
- Login: TomKellyGenetics
- Email:
- Kind: user
- Description: Bioinformatician. PhD 2014-2017: @mikblacklab Otago Uni. Postdoc 2018-2021: @minoda-lab RIKEN. The @carpentries. Genomics | Health | Math | Stats | AWS Dev
- Website: https://orcid.org/0000-0003-3904-6690
- Location: Akiruno, Tokyo, Japan
- Twitter: tomkxy
- Company: RIKEN IMS; H.U. Group @hugp-ri
- Icon url: https://avatars.githubusercontent.com/u/5493325?u=1d5e257863422341b84a3b43fd8cb8e4d9570277&v=4
- Repositories: 138
- Last Synced at: 2024-03-19T21:44:57.474Z
- Profile URL: https://github.com/TomKellyGenetics
GitHub Events
Total
- Create event: 1
- Push event: 2
- Release event: 1
- Watch event: 1
- Total: 5
Last Year
- Total: 0
Committers metadata
Last synced: 2 days ago
Total Commits: 422
Total Committers: 3
Avg Commits per committer: 140.667
Development Distribution Score (DDS): 0.036
Commits in past year: 0
Committers in past year: 0
Avg Commits per committer in past year: 0.0
Development Distribution Score (DDS) in past year: 0.0
| Name | Commits | |
|---|---|---|
| TomKellyGenetics | t****s@g****m | 407 |
| = | =**** | 13 |
| Robrecht Cannoodt | r****d@g****m | 2 |
Issue and Pull Request metadata
Last synced: 9 months ago
Total issues: 11
Total pull requests: 3
Average time to close issues: 2 months
Average time to close pull requests: 3 months
Total issue authors: 3
Total pull request authors: 3
Average comments per issue: 4.27
Average comments per pull request: 1.67
Merged pull request: 2
Bot issues: 0
Bot pull requests: 0
Past year issues: 0
Past year pull requests: 0
Past year average time to close issues: N/A
Past year average time to close pull requests: N/A
Past year issue authors: 0
Past year pull request authors: 0
Past year average comments per issue: 0
Past year average comments per pull request: 0
Past year merged pull request: 0
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- corybrunson (7)
- rcannood (2)
- TomKellyGenetics (2)
Top Pull Request Authors
- rcannood (1)
- kozo2 (1)
- TomKellyGenetics (1)
Top Issue Labels
- wip (2)
- enhancement (2)
- cran (1)
Top Pull Request Labels
Package metadata
- Total packages: 1
-
Total downloads:
- cran: 536 last-month
- Total docker downloads: 21,642
- Total dependent packages: 1
- Total dependent repositories: 2
- Total versions: 6
- Total maintainers: 1
cran.r-project.org: graphsim
Simulate Expression Data from 'igraph' Networks
- Homepage: https://github.com/TomKellyGenetics/graphsim/
- Documentation: http://cran.r-project.org/web/packages/graphsim/graphsim.pdf
- Licenses: GPL-3
- Latest release: 1.0.4 (published about 1 year ago)
- Last Synced: 2026-06-20T22:01:14.378Z (2 days ago)
- Versions: 6
- Dependent Packages: 1
- Dependent Repositories: 2
- Downloads: 536 Last month
- Docker Downloads: 21,642
-
Rankings:
- Forks count: 8.693%
- Stargazers count: 11.499%
- Average: 17.529%
- Dependent packages count: 18.108%
- Dependent repos count: 19.154%
- Downloads: 21.745%
- Docker downloads count: 25.973%
- Maintainers (1)
Dependencies
- R >= 2.10 depends
- Matrix * imports
- gplots * imports
- graphics * imports
- igraph * imports
- matrixcalc * imports
- mvtnorm * imports
- utils * imports
- R.rsp * suggests
- devtools * suggests
- knitr >= 1.5 suggests
- markdown * suggests
- prettydoc * suggests
- rmarkdown * suggests
- scales * suggests
- testthat * suggests
- vdiffr * suggests