JOSS collection | Ecosyste.ms: Summary

https://github.com/hope-data-science/tidyfst

Tidy Verbs for Fast Data Manipulation

Last synced: 15 Aug 2026

https://github.com/BohndiekLab/patato

PATATO: A Python PhotoAcoustic Tomography Analysis Toolkit

Last synced: 14 Aug 2026

https://github.com/malmaud/TensorFlow.jl

A Julia wrapper for TensorFlow

gpu julia machine-learning tensorflow wrapper

Last synced: 15 Aug 2026

https://github.com/voting-tools/pref_voting

pref_voting is a Python package that can be used to study and run elections with different preferential voting methods (graded voting methods and cardinal voting methods are also included for comparison).

computational-social-choice preferences preferential-voting python3 research-tool social-choice-theory utility-functions voting voting-methods

Last synced: 14 Aug 2026

https://github.com/robwschlegel/heatwaveR

This GitHub repo contains all of the code for the heatwaveR package.

Last synced: 15 Aug 2026

https://github.com/firefly-cpp/NiaAML

A Python AutoML framework that automatically composes and optimizes machine-learning pipelines using nature-inspired algorithms.

automl classification classification-pipelines framework machine-learning nature-inspired-algorithms python

Last synced: 15 Aug 2026

https://github.com/acerbilab/pyvbmc

PyVBMC: Variational Bayesian Monte Carlo algorithm for posterior and model inference in Python

bayesian-inference data-analysis gaussian-processes machine-learning python variational-inference

Last synced: 15 Aug 2026

https://github.com/beniaminogreen/zoomerjoin

Superlatively-fast fuzzy-joins in R

blazinglyfast fuzzyjoin join r r-package rstats rust zoomer

Last synced: 15 Aug 2026

https://github.com/bramvandijk88/cacatoo

A javascript library for building, exploring, and sharing spatially structured models of biological systems

Last synced: 15 Aug 2026

https://github.com/StevenGolovkine/FDApy

Python Package for Functional Data Analysis

Last synced: 14 Aug 2026

https://github.com/openeventdata/mordecai

Full text geoparsing as a Python library

geocoding geonames geoparsing nlp spacy toponym-resolution

Last synced: 15 Aug 2026

https://github.com/simplefoc/Arduino-FOC/

Arduino FOC for BLDC and Stepper motors - Arduino Based Field Oriented Control Algorithm Library

arduino arduino-foc arduino-library arduino-simplefoc bldc-motor bldc-motor-controller bldc-motors encoder foc foc-algorithm low-cost motor stepper-library stepper-motor stepper-motor-control vector-control

Last synced: 15 Aug 2026

https://github.com/eendebakpt/oapackage

Orthogonal Array package

Last synced: 15 Aug 2026

https://github.com/oncoray/mirp

Medical Image Radiomics Processor

image-processing radiomics

Last synced: 15 Aug 2026

https://github.com/barricklab/ostir

Software for predicting translation initiation rates in bacteria

bioengineering rna-structure synthetic-biology

Last synced: 15 Aug 2026

https://github.com/Niemeyer-Research-Group/pyMARS

Python-based (chemical kinetic) Model Automatic Reduction Software

Last synced: 15 Aug 2026

https://github.com/niosh-mining/obsplus

A Pandas-Centric ObsPy Expansion Pack

pandas seismology

Last synced: 15 Aug 2026

https://github.com/paul-buerkner/thurstonianIRT

Fit Thurstonian IRT models in R using Stan, lavaan, or Mplus

Last synced: 15 Aug 2026

https://github.com/HinodeXRT/xrtpy

Last synced: 15 Aug 2026

https://gitlab.com/mauricemolli/petitRADTRANS

Last synced: 15 Aug 2026

https://github.com/jjmccollum/teiphy

A Python package for converting TEI XML collations to NEXUS, BEAST 2.7 XML, and other formats

nexus phylogenetics python tei-xml text-encoding

Last synced: 15 Aug 2026

https://github.com/gridap/GridapSolvers.jl

Solvers and preconditioners for the Gridap ecosystem.

Last synced: 14 Aug 2026

https://github.com/Circuitscape/Omniscape.jl

Functions to compute omnidirectional landscape connectivity using circuit theory and the Omniscape algorithm.

animal-movement circuit-analysis circuit-theory circuitscape climate-change connectivity ecology julia-language julia-package landscape-ecology

Last synced: 15 Aug 2026

https://github.com/skyportal/skyportal

Collaborative platform for time-domain astronomy

astronomy collaborative-research lsst machine-learning transient-astronomy variable-stars

Last synced: 15 Aug 2026

https://github.com/vsoch/watchme

Reproducible watchers for research

changes cron reproducible watcher website

Last synced: 15 Aug 2026

https://github.com/ContextLab/quail

A python toolbox for analyzing and plotting free recall data

memory psychology-experiments python-toolbox speech-to-text

Last synced: 15 Aug 2026

https://github.com/Wytamma/snk

Snakemake workflow management system and CLI generation tool

Last synced: 15 Aug 2026

https://github.com/tkonolige/city2ba

Tools for generating synthetic bundle adjustment datasets

bundle-adjustment

Last synced: 15 Aug 2026

https://github.com/traja-team/traja

Python tools for spatial trajectory and time-series data analysis

animal-behavior python spatial-data-analysis time-series-analysis trajectory-analysis

Last synced: 15 Aug 2026

https://github.com/JuliaDynamics/DynamicalBilliards.jl

An easy-to-use, modular, extendable and absurdly fast Julia package for dynamical billiards in two dimensions.

billiard-systems billiards chaos geometry julia julialang lyapunov-spectrum models particles physics

Last synced: 15 Aug 2026

https://github.com/boisgera/bitstream

Binary Data for Humans

binary-data bitstream python

Last synced: 15 Aug 2026

https://github.com/eddelbuettel/rcppcnpy

Rcpp bindings for NumPy files

c-plus-plus cran numpy r r-package

Last synced: 15 Aug 2026

https://github.com/hiclib/iced

Normalizing Hi-C contact counts efficiently

i

Last synced: 15 Aug 2026

https://github.com/bmorris3/fleck

Fast approximate spectrophotometry of active stars (plus planets!)

Last synced: 15 Aug 2026

https://github.com/srigas/jaxkan

Kolmogorov–Arnold Networks built on JAX

flax jax kans kolmogorov-arnold-networks pikan

Last synced: 14 Aug 2026

https://github.com/emsig/emg3d

A multigrid solver for 3D electromagnetic diffusion

csem electromagnetic geophysics modelling multigrid python

Last synced: 15 Aug 2026

https://github.com/tornede/py_experimenter

The PyExperimenter is a tool for the automatic execution of experiments, e.g. for machine learning (ML), capturing corresponding results in a unified manner in a database.

database executor experiments python

Last synced: 15 Aug 2026

https://github.com/SwissClinicalTrialOrganisation/secuTrialR

Handling of data from the clinical data management system secuTrial

Last synced: 15 Aug 2026

https://github.com/mdsteiner/EFAtools

Last synced: 15 Aug 2026

https://github.com/ConnorDonegan/geostan

Bayesian spatial analysis

bayesian bayesian-inference bayesian-statistics epidemiology modeling public-health r r-package rspatial rstats spatial stan

Last synced: 15 Aug 2026

https://gitlab.com/akantu/akantu

Last synced: 14 Aug 2026

https://github.com/mdtanker/polartoolkit

Helpful tools for polar researchers

antarctica arctic bedmachine bedmap cryosphere gmt greenland jupyter-notebook plotting polar profiles pygmt python

Last synced: 15 Aug 2026

https://github.com/PetrKorab/Arabica

Python package for text mining of time-series data

exploratory-data-analysis nlp text-mining

Last synced: 14 Aug 2026

https://github.com/thorek1/MacroModelling.jl

Macros and functions to work with DSGE models.

difference-equations dsge dynamic-programming dynamical-systems implicit-differentiation macroeconomics optimal-control perturbation

Last synced: 15 Aug 2026

https://github.com/jungtaekkim/bayeso

Simple, but essential Bayesian optimization package

bayesian-optimization hyperparameter-optimization machine-learning

Last synced: 15 Aug 2026

https://gitlab.com/cosmograil/starred

A two-channel deconvolution method with Starlet regularization. The code also features a PSF reconstruction algorithm.

Deconvolution astronomy psf python

Last synced: 15 Aug 2026

https://github.com/arup-group/pam

Generate and modify transport demand scenarios via a Python API.

arup city-modelling city-modelling-lab cml transit

Last synced: 14 Aug 2026

https://github.com/mlfpm/deepof

DeepLabCut based data analysis package including pose estimation and representation learning mediated behavior recognition

Last synced: 15 Aug 2026

https://github.com/DrMarc/slab

python classes for working with sounds and conducting psychoacoustic experiments

audio psychoacoustics sound

Last synced: 15 Aug 2026

https://github.com/sodascience/metasyn

Transparent and privacy-friendly synthetic data generation

metadata open-data privacy synthetic-data

Last synced: 14 Aug 2026

https://github.com/sterinaldi/FIGARO

Fast Inference for GW Astronomy, Research and Observations

Last synced: 14 Aug 2026

https://github.com/gmrandazzo/libscientific

Libscientific is a C framework for multivariate and other statistical analysis

Last synced: 15 Aug 2026

https://github.com/OSC/ondemand

Supercomputing. Seamlessly. Open, Interactive HPC Via the Web

gateway hacktoberfest hpc hpc-applications

Last synced: 15 Aug 2026

https://github.com/UofUEpiBio/epiworldR

A general framework for quick epidemiological ABM models

abm agent-based-modeling covid-19 epidemics epidemiology r-package r-programming rpack rpkg seir seir-model simulation sir sir-model

Last synced: 15 Aug 2026

https://github.com/firedrakeproject/checkpoint_schedules

Schedules for incremental checkpointing of adjoint simulations.

Last synced: 14 Aug 2026

https://github.com/ropensci/emld

:package: JSON-LD representation of EML

Last synced: 15 Aug 2026

https://github.com/resurfemg-org/ReSurfEMG

An open source library for analysis of respiratory EMG

electromyogram electromyography healthcare-analysis

Last synced: 15 Aug 2026

https://github.com/slimgroup/InvertibleNetworks.jl

A Julia framework for invertible neural networks

bayesian-inference deep-invertible-networks deep-learning invertible-1x1-convolutions invertible-neural-networks julia julia-language machine-learning normalizing-flow normalizing-flows

Last synced: 15 Aug 2026

https://github.com/ropensci/weatherOz

An API Client for Australian Weather and Climate Data Resources

api-client australia climate data r rainfall rstats weather weather-api weather-forecast

Last synced: 15 Aug 2026

https://github.com/vsoch/citelang

markdown syntax and credit system for software!

citation credit doi publication research-software-engineering rseng

Last synced: 15 Aug 2026

https://github.com/JuliaAstro/EphemerisSources.jl

Access HORIZONS and SPICE ephemeris sources with idiomatic Julia.

astrodynamics astronomy ephemerides ephemeris

Last synced: 15 Aug 2026

https://github.com/PaulSt/NGSTrefftz

Add-On to NGSolve for Trefftz methods

finite-element-method numerical-methods open-source trefftz-methods

Last synced: 15 Aug 2026

https://github.com/panagiotisanagnostou/HiPart

Hierarchical divisive clustering algorithm execution, visualization and Interactive visualization.

bisecting-k-means bisecting-kmeans bisecting-kmeans-clustering cluster clustering contributions-welcome data-analysis data-mining data-science data-visualization divisive-clustering hierarchical-clustering machine-learning package pddp pyhton python python-package python3 visualization

Last synced: 15 Aug 2026

https://github.com/samuelduchesne/archetypal

archetypal: Retrieve, construct, simulate, convert and analyse building simulation templates

archetypes buildings energy-simulation energyplus energyplus-models python simulation-templates umi umi-template visualization

Last synced: 15 Aug 2026

https://github.com/samhforbes/PupillometryR

An R package for preparing and analysing pupillometry data

Last synced: 15 Aug 2026

https://github.com/cosimameyer/overviewR

🔦 Easily Extracting Information About Your Data in R

package-development

Last synced: 15 Aug 2026

https://github.com/cremerlab/hplc-py

A Python utility for the processing and quantification of chromatography data

analytical-chemistry chromatography-analysis hplc

Last synced: 14 Aug 2026

https://github.com/GEUS-Glaciology-and-Climate/pypromice

Process AWS data from L0 (raw logger) through Lx (end user)

greenland weather weather-station

Last synced: 15 Aug 2026

https://github.com/PyLops/pylops-mpi

MPI-powered PyLops with MPI4Py

Last synced: 15 Aug 2026

https://github.com/ropensci/terrainr

Get DEMs and orthoimagery from the USGS National Map, georeference your images and merge rasters, and visualize with Unity 3D

cran datasets dems map map-tiles mapping national-map nhd orthoimagery peer-reviewed progressr r r-package retrieve-data rstats terrainr unity unity-rendering-engine usgs

Last synced: 15 Aug 2026

https://gitlab.com/dglaeser/fieldcompare

Python package with command-line interface to compare field data

Last synced: 15 Aug 2026

https://github.com/CITCOM-project/CausalTestingFramework

A causal inference-driven framework for functional black-box testing of complex software.

causal-inference modelling verification

Last synced: 14 Aug 2026

https://github.com/TRIQS/solid_dmft

solid_dmft is a versatile python wrapper to perform DFT+DMFT calculations utilizing the TRIQS software library.

correlated-electrons dmft solid-state-physics

Last synced: 14 Aug 2026

https://github.com/brainets/frites

Framework for Information Theoretical analysis of Electrophysiological data and Statistics

brainhack brainhack-marseille brainweb cluster-based electrophysiological-data ffx functional-connectivity gaussian-copula group-level information-theory institut-neurosciences-timone neurophysiological-data rfx statistics

Last synced: 15 Aug 2026

https://github.com/0xCoto/Virgo

📡 Virgo: A Versatile Spectrometer for Radio Astronomy

astronomy astrophysics radio radio-astronomy radio-telescope rf rfi-mitigation sdr spectrometer telescope virgo

Last synced: 15 Aug 2026

https://github.com/MDAnalysis/solvation-analysis

A comprehensive tool for analyzing liquid solvation structure.

Last synced: 15 Aug 2026

https://github.com/sebastien-plutniak/archeoviz

Visualisation, Exploration, and Web Communication of Archaeological Spatial Data

archaeology archeology data-visualization r r-package rstats

Last synced: 14 Aug 2026

https://github.com/JuliaClimate/Drifters.jl

Trajectory simulations for point particles in the Ocean & Atmosphere

Last synced: 15 Aug 2026

https://github.com/Benjamin-Lee/CodonAdaptationIndex

Python Implementation of Codon Adaption Index

bioinformatics codons genetics

Last synced: 15 Aug 2026

https://gitlab.com/pvst/asi

Atomic Simulations Interface

Last synced: 15 Aug 2026

https://github.com/vyrjana/DearEIS

A GUI program for analyzing, simulating, and visualizing impedance spectra.

electrochemistry impedance impedance-spectroscopy python

Last synced: 15 Aug 2026

https://github.com/tldr-group/taufactor

TauFactor is a parallelised solver for calculating tortuosity factors from voxel data.

Last synced: 14 Aug 2026

https://github.com/jet-net/JetNet

For developing and reproducing ML + HEP projects.

Last synced: 14 Aug 2026

https://github.com/msmbuilder/osprey

🦅Hyperparameter optimization for machine learning pipelines 🦅

cross-validation hyperparameter-optimization machine-learning models optimization pretty-logo python scikit-learn

Last synced: 15 Aug 2026

https://github.com/garretrc/ggvoronoi

Easy Voronoi diagram heatmaps with ggplot2

Last synced: 15 Aug 2026

https://github.com/simoninireland/epyc

Python computational experiment management

Last synced: 15 Aug 2026

https://github.com/ropensci/suppdata

Grabbing SUPPlementary DATA in R

peer-reviewed r r-package rstats

Last synced: 15 Aug 2026

https://github.com/finsberg/gotranx

Next generation ODE translator

code-generation gotran ode parser parsing

Last synced: 15 Aug 2026

https://github.com/LDEO-CREW/Pythonic-DISORT

Discrete Ordinates Solver for the (1D) Radiative Transfer Equation in a single or multi-layer plane-parallel atmosphere. Coded entirely in Python 3. Based on Stamnes' FORTRAN DISORT (see references in the Jupyter Notebook) and has its main features.

atmospheric-modelling discrete-ordinates-method disort python radiative-transfer radiative-transfer-models

Last synced: 15 Aug 2026