iced

Score: 11.87811009857637

Last synced: about 20 hours ago
JSON representation

Repository metadata:

Normalizing Hi-C contact counts efficiently

Host: GitHub
URL: https://github.com/hiclib/iced
Owner: hiclib
License: other
Created: 2015-01-12T12:50:24.000Z (over 11 years ago)
Default Branch: master
Last Pushed: 2025-05-21T15:55:17.000Z (about 1 year ago)
Last Synced: 2026-06-11T18:03:11.050Z (12 days ago)
Topics: i
Language: Python
Homepage: http://members.cbio.mines-paristech.fr/~nvaroquaux/iced/
Size: 9.94 MB
Stars: 41
Watchers: 1
Forks: 21
Open Issues: 18
Metadata Files:
- Readme: README.rst
- License: LICENSE
- Citation: CITATION

Owner metadata:

Name: hiclib
Login: hiclib
Email:
Kind: organization
Description:
Website:
Location:
Twitter:
Company:
Icon url: https://avatars.githubusercontent.com/u/7159186?v=4
Repositories: 4
Last Synced at: 2023-08-25T01:08:49.711Z
Profile URL: https://github.com/hiclib

GitHub Events

Total

Create event: 4
Delete event: 1
Fork event: 1
Issue comment event: 4
Issues event: 3
Pull request event: 6
Push event: 2
Watch event: 14
Total: 35

Last Year

Issues event: 1
Watch event: 6
Total: 7

Committers metadata

Last synced: 4 days ago

Total Commits: 239
Total Committers: 6
Avg Commits per committer: 39.833
Development Distribution Score (DDS): 0.105

Commits in past year: 0
Committers in past year: 0
Avg Commits per committer in past year: 0.0
Development Distribution Score (DDS) in past year: 0.0

Name	Email	Commits
Nelle Varoquaux	n**x@g**m	214
nservant	n**t@c**r	11
Roberto Rossini	7****s	6
Gesine	g****r	5
Thomas Gilgenast	t**t@g**m	2
Matthias Blum	m****m	1

Issue and Pull Request metadata

Last synced: 10 months ago

Total issues: 27
Total pull requests: 76
Average time to close issues: 16 days
Average time to close pull requests: about 1 month
Total issue authors: 17
Total pull request authors: 5
Average comments per issue: 1.63
Average comments per pull request: 0.66
Merged pull request: 67
Bot issues: 0
Bot pull requests: 0

Past year issues: 1
Past year pull requests: 3
Past year average time to close issues: N/A
Past year average time to close pull requests: about 2 months
Past year issue authors: 1
Past year pull request authors: 2
Past year average comments per issue: 3.0
Past year average comments per pull request: 0.67
Past year merged pull request: 2
Past year bot issues: 0
Past year bot pull requests: 0

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/hiclib/iced

Top Issue Authors

NelleV (9)
robinweide (2)
biozzq (2)
lhanappa (1)
thomasgilgenast (1)
Balthasar-eu (1)
hanbinlu (1)
concatenize (1)
BioinformaticsXin (1)
werhoog (1)
QianzhaoJ (1)
diamondzabala1903-gif (1)
sshen82 (1)
esebesty (1)
beeber52 (1)

Top Pull Request Authors

NelleV (72)
nservant (3)
robomics (3)
gesinecauer (2)
thomasgilgenast (2)

Top Issue Labels

CRITICAL (1)

Top Pull Request Labels

Package metadata

Total packages: 2
Total downloads:
- pypi: 351 last-month
Total docker downloads: 43
Total dependent packages: 2 (may contain duplicates)
Total dependent repositories: 9 (may contain duplicates)
Total versions: 26
Total maintainers: 1

pypi.org: iced

ICE normalization

Homepage: https://hiclib.github.io/iced/
Documentation: https://hiclib.github.io/iced/documentation.html
Licenses: other
Latest release: 0.6.0 (published about 1 year ago)
Last Synced: 2026-06-19T22:00:26.734Z (4 days ago)
Versions: 25
Dependent Packages: 2
Dependent Repositories: 9
Downloads: 351 Last month
Docker Downloads: 43
Rankings:
- Docker downloads count: 1.343%
- Dependent packages count: 4.787%
- Dependent repos count: 4.847%
- Average: 6.928%
- Downloads: 16.735%
Maintainers (1)
- NelleV

guix: python-iced

ICE normalization

Homepage: https://github.com/hiclib/iced
Documentation: https://git.savannah.gnu.org/cgit/guix.git/tree/gnu/packages/bioinformatics.scm#n20548
Licenses: bsd-3
Latest release: 0.6.0 (published 4 months ago)
Last Synced: 2026-04-07T15:01:53.204Z (3 months ago)
Versions: 1
Dependent Packages: 0
Dependent Repositories: 0
Rankings:
- Dependent repos count: 0.0%
- Dependent packages count: 0.0%
- Average: 100%

Dependencies

requirements/default.txt pypi

cython *
numpy >=1.16
pandas *
scipy >=0.19
sklearn *

requirements/docs.txt pypi

matplotlib >=3.3
numpydoc >=1.0
sphinx >=1.8
sphinx-gallery >=0.7.0,

requirements/tests.txt pypi

codecov *
flake8 *
pytest >=5.2.0
pytest-cov >=2.7.0

.github/workflows/build-doc.yml actions

JamesIves/github-pages-deploy-action 4.1.4 composite
actions/checkout v2 composite
actions/setup-python v2 composite
actions/upload-artifact v1 composite

.github/workflows/test.yml actions

actions/checkout v2 composite
actions/setup-python v2 composite

iced/datasets/setup.py pypi

iced/io/setup.py pypi

iced/setup.py pypi

pyproject.toml pypi

requirements.txt pypi

setup.py pypi

environment.yml conda

cython
numpy >1.16
pandas
python >3
scikit-learn
scipy >0.19

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