Collections: JOSS
https://github.com/martinfleis/clustergram
Clustergram - Visualization and diagnostics for cluster analysis in Python
Last synced: 13 Aug 2026
https://github.com/terrytangyuan/autoplotly
Automatic Generation of Interactive Visualizations for Statistical Results
data-visualization ggplot2 interactive-visualizations machine-learning plotly plotlyjs rstats statistics
Last synced: 13 Aug 2026
https://github.com/jrzaurin/pytorch-widedeep
A flexible package for multimodal-deep-learning to combine tabular data with text and images using Wide and Deep models in Pytorch
deep-learning images model-hub multimodal-deep-learning python pytorch pytorch-cv pytorch-nlp pytorch-tabular-data pytorch-transformers tabular-data text
Last synced: 13 Aug 2026
https://gitlab.com/ags-data-format-wg/ags-python-library
[Documentation](https://ags-data-format-wg.gitlab.io/ags-python-library/index.html) | A library to read and write AGS files using Pandas DataFrames
Geotechnics geology geospatial geotechnical openml python
Last synced: 13 Aug 2026
https://github.com/xuanxu/nimbus
Nimbus is a Ruby gem to implement Random Forest algorithms in a genomic selection context
random-forest
Last synced: 13 Aug 2026
https://github.com/aiidateam/kiwipy
A python messaging library for RPC, task queues and broadcasts
python rabbitmq
Last synced: 13 Aug 2026
https://github.com/soundata/soundata
Python library for downloading, loading & working with sound datasets
audio bioacoustics dataset environmental-sound python urban-sound
Last synced: 13 Aug 2026
https://github.com/capytaine/capytaine
Python BEM solver for linear potential flow, based on Nemoh.
boundary-element-method fortran hydrodynamics potential-flow python sea-keeping water-wave wave-energy
Last synced: 13 Aug 2026
https://github.com/astorfi/speechpy
:speech_balloon: SpeechPy - A Library for Speech Processing and Recognition: http://speechpy.readthedocs.io/en/latest/
feature-extraction python speech-recognition speechpy
Last synced: 13 Aug 2026
https://github.com/petrobras/ross
ROSS is a library written in Python for rotordynamic analysis.
Last synced: 13 Aug 2026
https://github.com/open-atmos/PySDM
Pythonic particle-based (super-droplet) cloud microphysics (and aqueous-chemistry) package with box, parcel & 1D/2D prescribed-flow examples in Python, Julia and Matlab
atmospheric-modelling atmospheric-physics cuda gpu gpu-computing monte-carlo-simulation numba nvrtc particle-system physics-simulation pint pypi-package python research simulation thrust
Last synced: 13 Aug 2026
https://github.com/r-cas/ryacas
Ryacas: R Interface to the Yacas Computer Algebra System
Last synced: 13 Aug 2026
https://github.com/CliMA/EnsembleKalmanProcesses.jl
Derivative-free parameter calibration and uncertainty quantification for expensive models using ensemble Kalman methods
bayesian-inference calibration data-assimilation derivative-free-optimization ensemble-kalman-filter ensemble-kalman-inversion inverse-problems julia machine-learning optimization parameter-estimation scientific-computing uncertainty-quantification
Last synced: 13 Aug 2026
https://github.com/SMTG-Bham/ShakeNBreak
Defect structure-searching employing chemically-guided bond distortions
ab-initio computational-chemistry dft distortions materials materials-design materials-informatics point-defects pymatgen python3 science semiconductors structure-searching symmetry-breaking vasp
Last synced: 13 Aug 2026
https://github.com/finsberg/pulse
A software for solving problems in cardiac mechanics
Last synced: 13 Aug 2026
https://github.com/fitbenchmarking/fitbenchmarking
Tool for comparing the run time and accuracy of minimizers on fit benchmarking problems
Last synced: 13 Aug 2026
https://github.com/dftd3/simple-dftd3
Library first implementation of the D3 dispersion correction
ase computational-chemistry dispersion-correction pyscf qcschema quantum-chemistry
Last synced: 13 Aug 2026
https://github.com/larq/larq
An Open-Source Library for Training Binarized Neural Networks
binarized-neural-networks binder deep-learning keras larq machine-learning python quantized-neural-networks tensorflow
Last synced: 13 Aug 2026
https://github.com/jessecambon/tidygeocoder
Geocoding Made Easy
geocoding r rspatial rstats tidyverse
Last synced: 13 Aug 2026
https://github.com/nansencenter/DAPPER
Data Assimilation with Python: a Package for Experimental Research
bayesian-filter bayesian-methods chaos data-assimilation enkf kalman kalman-filtering particle-filter state-estimation
Last synced: 13 Aug 2026
https://github.com/derrynknife/SurPyval
A Python package for survival analysis. The most flexible survival analysis package available. SurPyval can work with arbitrary combinations of observed, censored, and truncated data. SurPyval can also fit distributions with 'offsets' with ease, for example the three parameter Weibull distribution.
actuarial-science churn-prediction non-parametric parametric-distribution parametric-methods probability-plot reliability reliability-analysis reliability-engineering risk-analysis survival-analysis weibull
Last synced: 13 Aug 2026
https://github.com/dcr-unibe-ch/presize
Precision Based Sample Size Calculation
confidence-intervals precision sample-size-calculation shiny-app
Last synced: 13 Aug 2026
https://github.com/Degiacomi-Lab/molearn
protein conformational spaces meet machine learning
machine-learning molecular-dynamics molecular-modeling protein-structure
Last synced: 13 Aug 2026
https://github.com/pyiron/executorlib
Up-scale python functions for high-performance computing (HPC)
concurrent-futures distributed-computing flux gpu hpc hpc-cluster mpi mpi4py multiprocessing parallel-computing pyiron python scientific-computing slurm task-scheduler
Last synced: 13 Aug 2026
https://github.com/ropensci/cffr
Generate Citation File Format (cff) Metadata for R Packages
attribution cff citation citation-file-format citation-files cran metadata r r-cran r-package ropensci rstats
Last synced: 13 Aug 2026
https://github.com/DidierMurilloF/FielDHub
FielDHub is an R Shiny design of experiments (DOE) app that aids in the creation of traditional, unreplicated, augmented and partially replicated (p-rep) designs applied to agriculture, plant breeding, forestry, animal and biological sciences.
agricultural breeding design doe experimental plantbreeding r rstats shiny
Last synced: 13 Aug 2026
https://github.com/thieu1995/permetrics
Artificial intelligence (AI, ML, DL) performance metrics implemented in Python
classification classification-report clustering-evaluation coefficient-of-determination deviation-of-runoff-volume evaluation-metrics kling-gupta-efficiency mae nash-sutcliffe-efficiency performance-metrics regression regression-methods relative-error rmse symmetric-mean-absolute-percentage willmott-index
Last synced: 12 Aug 2026
https://github.com/pypeit/PypeIt
The Python Spectroscopic Data Reduction Pipeline
Last synced: 13 Aug 2026
https://github.com/CHOP-CGTInformatics/REDCapTidieR
Makes it easy to read REDCap Projects into R
r redcap redcap-api tidy-data
Last synced: 12 Aug 2026
https://github.com/opengeos/HyperCoast
A Python Package for Visualizing and Analyzing Hyperspectral Data in Coastal Environments
aviris coastal emit geospatial hyperspectral ipyleaflet ipywidgets leafmap nasa nasa-pace neon pace python
Last synced: 13 Aug 2026
https://github.com/PyAutoLabs/PyAutoFit
PyAutoFit: Classy Probabilistic Programming
astronomy bayesian-inference bayesian-methods graphical-models mcmc model probabilistic-programming python statistical-analysis statistics stats
Last synced: 13 Aug 2026
https://github.com/neuralhydrology/neuralhydrology
Python library to train neural networks with a strong focus on hydrological applications.
Last synced: 13 Aug 2026
https://github.com/willyfh/visualtorch
VisualTorch aims to help visualize Torch-based neural network architectures.
architecture-diagram architecture-visualization artificial-intelligence deep-learning machine-learning neural-network pytorch torch visualization visualtorch
Last synced: 13 Aug 2026
https://github.com/GeoStat-Framework/pentapy
A Python toolbox for pentadiagonal linear systems
linear-algebra linear-systems math matrix pentadiagonal-linear-systems python solvers toolbox
Last synced: 13 Aug 2026
https://github.com/JuliaDynamics/DynamicalSystems.jl
Award winning software library for nonlinear dynamics and nonlinear timeseries analysis
attractor chaos complexity delay-coordinates dynamical-systems entropy fractal-dimension hacktoberfest lyapunov mathematics nonlinear nonlinear-dynamics physics
Last synced: 13 Aug 2026
https://github.com/parmoo/parmoo
Python library for parallel multiobjective simulation optimization
blackbox-optimization mathematical-software multicriteria-optimization multiobjective multiobjective-optimization numerical-optimization python3 response-surface-methodology simulation-based-optimization simulation-optimization surrogate-based-optimization
Last synced: 13 Aug 2026
https://github.com/KVSlab/turtleFSI
Monolithic Fluid-Structure Interaction (FSI) solver
fenics fluid-structure-interaction python
Last synced: 13 Aug 2026
https://gitlab.com/picos-api/picos
A Python interface to conic optimization solvers.
math optimization python
Last synced: 13 Aug 2026
https://github.com/morganjwilliams/pyrolite
A set of tools for getting the most from your geochemical data.
chemistry data-science geochemical-data geochemistry geoscience pyrolite ternary-diagrams
Last synced: 13 Aug 2026
https://github.com/rorynolan/filesstrings
A set of operations for manipulating strings in R, built on top of the stringr package and inspired by my struggles in trying to sensibly rename microscopy images.
Last synced: 13 Aug 2026
https://github.com/wilsonrljr/sysidentpy
A Python Package For System Identification Using NARMAX Models
data-science dynamical-systems machine-learning narmax narx system-identification time-series
Last synced: 13 Aug 2026
https://github.com/mprib/caliscope
Multicamera Calibration for Motion Capture Workflows
bundle-adjustment camera-calibration extrinsic-calibration intrinsic-calibration motion-capture-mocap motion-capture-processing open-source
Last synced: 13 Aug 2026
https://github.com/ArdiaD/RiskPortfolios
Functions for the construction of risk-based portfolios
covariance optimization portfolio portfolio-optimization risk
Last synced: 13 Aug 2026
https://github.com/duetosymmetry/qnm
Python package for computing Kerr quasinormal mode frequencies, separation constants, and spherical-spheroidal mixing coefficients
black-holes general-relativity numerical-methods physics python scientific-computing
Last synced: 13 Aug 2026
https://github.com/JuliaSymbolics/Metatheory.jl
Makes Julia reason with equations. General purpose metaprogramming, symbolic computation and algebraic equational reasoning library for the Julia programming language: E-Graphs & equality saturation, term rewriting and more.
compiler-construction compiler-optimization egraphs equality-saturation julia optimization programming-language symbolic symbolic-computation symbolic-manipulation term-rewriting
Last synced: 13 Aug 2026
https://github.com/kno10/python-kmedoids
Fast K-Medoids clustering in Python with FasterPAM
Last synced: 12 Aug 2026
https://github.com/changliao1025/pyflowline
A mesh independent river network generator for hydrologic models
earth-system-model gis graph hydrology river
Last synced: 12 Aug 2026
https://github.com/ekiefl/pooltool
A sandbox billiards game that emphasizes realistic physics
billiards eight-ball panda3d physics pool python simulation snooker
Last synced: 13 Aug 2026
https://github.com/benmaier/netwulf
Interactive visualization of networks based on Ulf Aslak's d3 web app.
d3 network-visualization networkx python
Last synced: 13 Aug 2026
https://github.com/upb-lea/gym-electric-motor
Gym Electric Motor (GEM): An OpenAI Gym Environment for Electric Motors
benchmark converters electric-drive electrical-engineering gym-environment machinelearning motor-models openai openai-gym openai-gym-environments pmsm reinforcement-learning
Last synced: 13 Aug 2026
https://github.com/wright-group/WrightTools
Tools for loading, processing, and plotting multidimensional spectroscopy data.
python
Last synced: 13 Aug 2026
https://github.com/esteinig/nanoq
Minimal but speedy quality control for nanopore reads in Rust :bear:
Last synced: 12 Aug 2026
https://github.com/samreay/ChainConsumer
Corner plots, LaTeX tables and plotting walks.
Last synced: 13 Aug 2026
https://github.com/martibosch/detectree
Tree detection from aerial imagery in Python
image-segmentation python remote-sensing tree-canopy tree-detection tree-pixels
Last synced: 13 Aug 2026
https://github.com/ropensci/osfr
R interface to the Open Science Framework (OSF)
open-science osf reproducible-research
Last synced: 13 Aug 2026
https://github.com/wrenfold/wrenfold
Toolkit for generating code from symbolic math expressions.
code-generation computer-vision mathematics robotics symbolic-math
Last synced: 13 Aug 2026
https://github.com/ni1o1/transbigdata
A Python package develop for transportation spatio-temporal big data processing, analysis and visualization.
bike-sharing-data bus-gps-data data-analysis data-pre-processing data-quality-analysis data-visualization geospatial-data python spatio-temporal-data taxi-gps-data transportation
Last synced: 13 Aug 2026
https://github.com/torressa/cspy
A collection of algorithms for the (Resource) Constrained Shortest Path problem in Python / C++ / C#
bidirectional-labeling-algorithm csp-problem operations-research optimization optimization-algorithms optimization-library resource-constrained-shortest-path
Last synced: 13 Aug 2026
https://github.com/bjodah/pyodesys
∫ Straightforward numerical integration of systems of ordinary differential equations
code-generation initial-value-problem numerical-codes ordinary-differential-equations symbolic-manipulation sympy
Last synced: 13 Aug 2026
https://github.com/labsyspharm/scimap
Spatial Single-Cell Analysis Toolkit
image-analysis pypi python single-cell-analysis spatial-analysis
Last synced: 13 Aug 2026
https://github.com/sciris/sciris
Fast, flexible tools to simplify scientific Python
computational-science containers data-science matplotlib numpy parallelization plotting python scientific-computing utilities
Last synced: 13 Aug 2026
https://github.com/cbrnr/sleepecg
Sleep stage detection using ECG
ecg heartrate peak-detection python sleep-staging
Last synced: 13 Aug 2026
https://github.com/ejolly/pymer4
All the convenience of lme4 in python
lme4 mixed-models python
Last synced: 13 Aug 2026
https://github.com/qiskit-community/qiskit-dynamics
DEPRECATED - Tools for building and solving models of quantum systems in Qiskit
Last synced: 12 Aug 2026
https://github.com/davemlz/eemont
A python package that extends Google Earth Engine.
earth-engine geographic-information-systems gis google google-earth-engine python python3 raster remote-sensing satellite-imagery satellite-images spectral-indices
Last synced: 13 Aug 2026
https://github.com/simpeg/aurora
software for processing natural source electromagnetic data
Last synced: 13 Aug 2026
https://github.com/powerapi-ng/powerapi
PowerAPI is a Python framework for building software-defined power meters.
energy energy-monitoring green-computing inria power-meter python
Last synced: 13 Aug 2026
https://github.com/Chilipp/straditize
⛔️ Python package for digitizing pollen diagrams
Last synced: 13 Aug 2026
https://github.com/cbrnr/mnelab
MNELAB – a GUI for MNE-Python
eeg gui ica meg mne python qt6 xdf
Last synced: 13 Aug 2026
https://github.com/IndrajeetPatil/statsExpressions
Tidy data frames and expressions with statistical summaries 📜
bayesian-inference bayesian-statistics contingency-table correlation effectsize meta-analysis parametric robust robust-statistics statistical-details statistical-tests tidy
Last synced: 13 Aug 2026
https://github.com/LiberTEM/LiberTEM
Open pixelated STEM framework
data-processing electron-microscopy image-processing python
Last synced: 13 Aug 2026
https://github.com/skypyproject/skypy
SkyPy: A package for modelling the Universe.
astronomy astrophysics cosmology forward-modeling skypy
Last synced: 13 Aug 2026
https://github.com/JaGeo/LobsterPy
Package to perform automatic bonding analysis with the program Lobster in the field of computational materials science and quantum chemistry
chemical-bonding computational-chemistry computational-materials-science materials-informatics plotting python
Last synced: 12 Aug 2026
https://github.com/furrer-lab/abn
Bayesian network analysis in R
bayesian-network binomial categorical-data gaussian grouped-datasets mixed-effects multinomial multivariate poisson structure-learning
Last synced: 13 Aug 2026
https://github.com/ropensci/ijtiff
An R Package for general purpose TIFF file I/O which plays nice with ImageJ
image-manipulation imagej peer-reviewed r r-package rstats tiff-files tiff-images
Last synced: 13 Aug 2026
https://github.com/vocalpy/crowsetta
A tool to work with any format for annotating animal sounds
animal-communication animal-vocalizations annotation annotation-format bioacoustic-analysis bioacoustics birdsong csv dataset python python3
Last synced: 12 Aug 2026
https://github.com/exoplanet-dev/exoplanet
Fast & scalable MCMC for all your exoplanet needs!
astronomy astrophysics bayesian-inference exoplanet exoplanet-radial-velocities exoplanet-transits exoplanets gaussian-processes mcmc pymc3 time-series time-series-analysis
Last synced: 12 Aug 2026
https://github.com/Novartis/torchsurv
Deep survival analysis made easy
deep-learning pytorch survival-analysis
Last synced: 12 Aug 2026
https://github.com/ropensci/hydroscoper
R interface to the Greek National Data Bank for Hydrometeorological Information
climate greece hydrology hydrometeorology hydroscope meteorological-data meteorological-stations peer-reviewed r r-package rstats tidy-data time-series water-resources
Last synced: 13 Aug 2026
https://github.com/BiomedSciAI/fuse-med-ml
A python framework accelerating ML based discovery in the medical field by encouraging code reuse. Batteries included :)
ai cmmd collaboration ct deep-learning fuse fuse-med-ml fusemedml hacktoberfest healthcare isic knight-challenge machine-learning medical medical-imaging multimodality python pytorch stoic vision
Last synced: 13 Aug 2026
https://github.com/OpenGeoVis/PVGeo
🌍 Python package of VTK-based algorithms to analyze geoscientific data and models
3d data-visualization geophysics geosciences model-building open-science paraview paraview-plugin python visual-data-integration visualization vtk
Last synced: 13 Aug 2026
https://github.com/sewardlee337/finreportr
R package - Financial Data from U.S. Securities and Exchange Commission
balance-sheet cash-flow finance financial-data financial-statement financial-statements income-statement r sec stock-ticker-symbol
Last synced: 13 Aug 2026
https://github.com/bempp/bempp-cl
A fast Python based just-in-time compiling boundary element library
Last synced: 13 Aug 2026
https://github.com/open-atmos/PyMPDATA
Numba-accelerated Pythonic implementation of MPDATA with examples in Python, Julia, Rust and Matlab
advection advection-diffusion atmospheric-modelling numba numerical-integration pde-solver pypi-package python research simulation
Last synced: 13 Aug 2026
https://github.com/swiftsim/swiftsimio
Python library for reading SWIFT data. Uses unyt and h5py.
astrophysics cosmology hdf5 particle simulation sph
Last synced: 13 Aug 2026
https://github.com/NIFTy-PPL/JAXbind
Bind any function written in another language to JAX with support for JVP/VJP/batching/jit compilation
Last synced: 13 Aug 2026
https://github.com/IMMM-SFA/mosartwmpy
Python translation of MOSART-WM: a water routing and management model
Last synced: 12 Aug 2026
https://github.com/caseyyoungflesh/MCMCvis
R package to visualize, manipulate, and summarize MCMC output
Last synced: 13 Aug 2026
https://github.com/damask-multiphysics/DAMASK
Düsseldorf Advanced Material Simulation Kit (Read-only mirror)
crystal-plasticity engineering material materials materials-science metallurgy multi-physics physics plasticity science simulation
Last synced: 13 Aug 2026
https://github.com/lskatz/fasten
:construction_worker: Fasten toolkit, for streaming operations on fastq files
bioinformatics fastq-files rust
Last synced: 13 Aug 2026
https://github.com/toruseo/UXsim
Vehicular traffic flow simulator in road network for Python
dynamic-traffic-assignment simulation traffic traffic-flow traffic-flow-simulation traffic-simulation transportation transportation-network
Last synced: 13 Aug 2026
https://github.com/dmentipl/plonk
Smoothed particle hydrodynamics analysis and visualization with Python.
astronomy python smoothed-particle-hydrodynamics visualization
Last synced: 13 Aug 2026
https://github.com/paulgovan/BayesianNetwork
Bayesian Network Modeling and Analysis
bayesian-networks learning-algorithm network-measures r
Last synced: 13 Aug 2026
https://github.com/VeinsOfTheEarth/RivGraph
Extracting and quantifying graphical representations of river and delta channel networks from binary masks
manuscript python
Last synced: 12 Aug 2026
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