scimap

image-analysis pypi python single-cell-analysis spatial-analysis

Score: 16.101985984281242

Last synced: about 15 hours ago
JSON representation

Repository metadata:

Spatial Single-Cell Analysis Toolkit

Host: GitHub
URL: https://github.com/labsyspharm/scimap
Owner: labsyspharm
License: mit
Created: 2020-06-09T20:08:44.000Z (over 6 years ago)
Default Branch: master
Last Pushed: 2026-09-09T02:19:13.000Z (21 days ago)
Last Synced: 2026-09-10T21:37:09.407Z (19 days ago)
Topics: image-analysis, pypi, python, single-cell-analysis, spatial-analysis
Language: Python
Homepage: https://scimap.xyz/
Size: 43.7 MB
Stars: 116
Watchers: 1
Forks: 38
Open Issues: 53
Metadata Files:
- Readme: README.md
- License: LICENSE

Owner metadata:

Name: Laboratory of Systems Pharmacology @ Harvard
Login: labsyspharm
Email: hits@harvard.edu
Kind: organization
Description: Reinventing the fundamental science underlying the development of new medicines and their use in individual patients.
Website: https://labsyspharm.org/
Location: Boston, MA
Twitter:
Company:
Icon url: https://avatars.githubusercontent.com/u/47149595?v=4
Repositories: 181
Last Synced at: 2026-09-25T17:52:22.481Z
Profile URL: https://github.com/labsyspharm

GitHub Events

Total

Create event: 2
Fork event: 10
Issue comment event: 48
Issues event: 30
Pull request event: 10
Push event: 68
Release event: 1
Watch event: 30
Total: 199

Last Year

Create event: 1
Fork event: 2
Issue comment event: 3
Issues event: 2
Pull request event: 4
Push event: 5
Watch event: 5
Total: 22

Committers metadata

Last synced: 1 day ago

Total Commits: 841
Total Committers: 14
Avg Commits per committer: 60.071
Development Distribution Score (DDS): 0.098

Commits in past year: 7
Committers in past year: 2
Avg Commits per committer in past year: 3.5
Development Distribution Score (DDS) in past year: 0.143

Name	Email	Commits
Ajit Johnson Nirmal	a**n@g**m	759
amorje	a**e@g**m	49
dependabot[bot]	4****]	11
Yu-An Chen	a**2@g**m	6
sarafiller	8****r	6
Radkevich	e**h@M**g	2
tdurieux	d**s@h**m	1
emmanuel-contreras	e**s@w**u	1
SarkkinenJ	9****J	1
MargotCh	m**e@g**m	1
Jeremy Muhlich	j**h@b**g	1
Charlotte Soneson	c**n@g**m	1
Artem Sokolov	a**v@g**m	1
Sara Filler	s**r@s**u	1

Issue and Pull Request metadata

Last synced: 1 day ago

Total issues: 89
Total pull requests: 67
Average time to close issues: 2 months
Average time to close pull requests: about 1 month
Total issue authors: 53
Total pull request authors: 14
Average comments per issue: 2.06
Average comments per pull request: 0.4
Merged pull request: 43
Bot issues: 0
Bot pull requests: 33

Past year issues: 5
Past year pull requests: 3
Past year average time to close issues: 26 days
Past year average time to close pull requests: 8 days
Past year issue authors: 5
Past year pull request authors: 2
Past year average comments per issue: 0.8
Past year average comments per pull request: 0.33
Past year merged pull request: 1
Past year bot issues: 0
Past year bot pull requests: 2

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/labsyspharm/scimap

Top Issue Authors

ajitjohnson (6)
josenimo (5)
sailseem (4)
rach-crc (3)
yerahko (3)
kevinyamauchi (3)
PietroD (3)
LukasHats (3)
bugie19 (3)
andreevg04 (3)
pakiessling (2)
vraghu90 (2)
virlyananda (2)
emmanuel-contreras (2)
MargotCh (2)

Top Pull Request Authors

dependabot[bot] (33)
amorje (11)
sarafiller (5)
Yu-AnChen (4)
emmanuel-contreras (2)
emir-radkevich (2)
SarkkinenJ (2)
csoneson (2)
ArtemSokolov (1)
MargotCh (1)
jmuhlich (1)
ruiheesi (1)
adamjtaylor (1)
tdurieux (1)

Top Issue Labels

enhancement (3)
bug (3)

Top Pull Request Labels

dependencies (33)
python (2)

Package metadata

Total packages: 2
Total downloads:
- pypi: 4,157 last-month
Total dependent packages: 0 (may contain duplicates)
Total dependent repositories: 1 (may contain duplicates)
Total versions: 262
Total maintainers: 1

proxy.golang.org: github.com/labsyspharm/scimap

Homepage:
Status: removed
Documentation: https://pkg.go.dev/github.com/labsyspharm/scimap#section-documentation
Licenses: mit
Latest release: v0.0.0-20260909021837-5666f0d7c1f2 (published 21 days ago)
Last Synced: 2026-09-28T15:31:02.030Z (1 day ago)
Versions: 1
Dependent Packages: 0
Dependent Repositories: 0
Rankings:
- Dependent packages count: 4.35%
- Average: 4.496%
- Dependent repos count: 4.643%

pypi.org: scimap

Spatial Single-Cell Analysis Toolkit

Homepage: https://pypi.org/project/scimap/
Documentation: https://scimap.xyz
Licenses: MIT
Latest release: 2.3.6 (published 6 months ago)
Last Synced: 2026-09-28T15:31:12.378Z (1 day ago)
Versions: 261
Dependent Packages: 0
Dependent Repositories: 1
Downloads: 4,157 Last month
Rankings:
- Downloads: 7.419%
- Forks count: 8.892%
- Stargazers count: 9.817%
- Dependent packages count: 10.126%
- Average: 11.558%
- Dependent repos count: 21.535%
Maintainers (1)
- ajitjohnson

Dependencies

poetry.lock pypi

197 dependencies

.github/workflows/build-unix-mac-win.yml actions

abatilo/actions-poetry v2.1.4 composite
actions/cache v3 composite
actions/checkout v3 composite
actions/setup-python v3 composite

.github/workflows/dockerhub.yml actions

docker/build-push-action v2 composite
docker/login-action v1 composite
docker/setup-buildx-action v1 composite
docker/setup-qemu-action v1 composite

.github/workflows/docs.yml actions

actions/checkout v3 composite
actions/setup-python v3 composite

Dockerfile docker

python 3.8 build

pyproject.toml pypi

black 24.3.0 develop
freezegun ^1.2.2 develop
ipython ^8.17.2 develop
isort 4.3.21 develop
macfsevents ^0.8.4 develop
mkdocs ^1.5.3 develop
mypy ^1.7.0 develop
pydocstyle ^6.3.0 develop
pygments ^2.16.1 develop
pyinstaller ^6.2.0 develop
pylint ^3.0.2 develop
pync ^2.0.3 develop
pytest ^7.4.3 develop
pytest-cov ^4.1.0 develop
pytest-describe https://github.com/pytest-dev/pytest-describe# develop
pytest-expecter ^3.0 develop
pytest-random ^0.02 develop
sniffer ^0.4.1 develop
anndata ^0.10.5.post1
combat ^0.3.3
dask ^2023.11.0
gensim ^4.3.2
llvmlite ^0.41.1
matplotlib ^3.8.1
mkdocs ^1.5.3
mkdocs-material ^9.4.8
mpl-scatter-density ^0.7
napari ^0.4.18
napari-ome-zarr ^0.4.0
numba >=0.58.1
numpy ^1.26.2
pandas ^2.1.3
phenograph ^1.5.7
plotly ^5.18.0
pyqt6 ^6.6.1
pytest ^7.4.3
pytest-xvfb ^3.0.0
python >=3.9,<3.13
scanpy ^1.9.6
scikit-learn ^1.4.2
scipy >1.11.3,<=1.12.0
seaborn ^0.13.2
shapely ^2.0.2
tifffile ^2023.9.26
zarr 2.10.3

.github/workflows/nbtomd.yml actions

actions/cache v3 composite
actions/checkout v3 composite
actions/setup-python v4 composite

.github/workflows/draft-pdf.yml actions

actions/checkout v4 composite
actions/upload-artifact v4 composite
openjournals/openjournals-draft-action master composite

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