ijtiff

image-manipulation imagej peer-reviewed r r-package rstats tiff-files tiff-images

Score: 15.904459263006139

Last synced: about 14 hours ago
JSON representation

Repository metadata:

An R Package for general purpose TIFF file I/O which plays nice with ImageJ

Host: GitHub
URL: https://github.com/ropensci/ijtiff
Owner: ropensci
Created: 2018-02-22T05:31:54.000Z (over 8 years ago)
Default Branch: master
Last Pushed: 2025-04-05T21:25:21.000Z (about 1 year ago)
Last Synced: 2025-10-17T19:48:38.565Z (8 months ago)
Topics: image-manipulation, imagej, peer-reviewed, r, r-package, rstats, tiff-files, tiff-images
Language: R
Homepage: https://docs.ropensci.org/ijtiff
Size: 58.1 MB
Stars: 17
Watchers: 4
Forks: 9
Open Issues: 1
Metadata Files:
- Readme: README.Rmd
- Changelog: NEWS.md
- Contributing: .github/CONTRIBUTING.md
- Codemeta: codemeta.json

CodeMeta metadata:

@context: https://doi.org/10.5063/schema/codemeta-2.0
@type: SoftwareSourceCode
Identifier: ijtiff
Description: General purpose TIFF file I/O for R users. Currently the only such package with read and write support for TIFF files with floating point (real-numbered) pixels, and the only package that can correctly import TIFF files that were saved from 'ImageJ' and write TIFF files than can be correctly read by 'ImageJ' . Also supports text image I/O.
Name: ijtiff: Comprehensive TIFF I/O with Full Support for 'ImageJ' TIFF Files
Related link:
- https://docs.ropensci.org/ijtiff/
- https://CRAN.R-project.org/package=ijtiff
Code repository: https://github.com/ropensci/ijtiff
Issue tracker: https://github.com/ropensci/ijtiff/issues
License: https://spdx.org/licenses/GPL-3.0
Version: 3.1.3
Programming language:
- @type: ComputerLanguage
- Name: R
- Url: https://r-project.org
Runtime platform: R version 4.4.3 (2025-02-28)
Provider:
- @id: https://cran.r-project.org
- @type: Organization
- Name: Comprehensive R Archive Network (CRAN)
- Url: https://cran.r-project.org
Author:
- - @type: Person
  - Given name: Rory
  - Family name: Nolan
  - Email: rorynoolan@gmail.com
  - @id: https://orcid.org/0000-0002-5239-4043
- - @type: Person
  - Given name: Kent
  - Family name: Johnson
  - Email: kjohnson@akoyabio.com
Contributor:
- - @type: Person
  - Given name: Simon
  - Family name: Urbanek
  - Email: Simon.Urbanek@r-project.org
- - @type: Person
  - Given name: Jeroen
  - Family name: Ooms
  - @id: https://orcid.org/0000-0002-4035-0289
- - @type: Person
  - Given name: Sergi
  - Family name: Padilla-Parra
  - Email: spadilla@well.ox.ac.uk
  - @id: https://orcid.org/0000-0002-8010-9481
Maintainer:
- - @type: Person
  - Given name: Rory
  - Family name: Nolan
  - Email: rorynoolan@gmail.com
  - @id: https://orcid.org/0000-0002-5239-4043
Software suggestions:
- - @type: SoftwareApplication
  - Identifier: abind
  - Name: abind
  - Provider:
    - @id: https://cran.r-project.org
    - @type: Organization
    - Name: Comprehensive R Archive Network (CRAN)
    - Url: https://cran.r-project.org
  - Same as: https://CRAN.R-project.org/package=abind
- - @type: SoftwareApplication
  - Identifier: covr
  - Name: covr
  - Provider:
    - @id: https://cran.r-project.org
    - @type: Organization
    - Name: Comprehensive R Archive Network (CRAN)
    - Url: https://cran.r-project.org
  - Same as: https://CRAN.R-project.org/package=covr
- - @type: SoftwareApplication
  - Identifier: EBImage
  - Name: EBImage
  - Provider:
    - @id: https://www.bioconductor.org
    - @type: Organization
    - Name: Bioconductor
    - Url: https://www.bioconductor.org
  - Same as: https://bioconductor.org/packages/release/bioc/html/EBImage.html
- - @type: SoftwareApplication
  - Identifier: knitr
  - Name: knitr
  - Provider:
    - @id: https://cran.r-project.org
    - @type: Organization
    - Name: Comprehensive R Archive Network (CRAN)
    - Url: https://cran.r-project.org
  - Same as: https://CRAN.R-project.org/package=knitr
- - @type: SoftwareApplication
  - Identifier: rmarkdown
  - Name: rmarkdown
  - Provider:
    - @id: https://cran.r-project.org
    - @type: Organization
    - Name: Comprehensive R Archive Network (CRAN)
    - Url: https://cran.r-project.org
  - Same as: https://CRAN.R-project.org/package=rmarkdown
- - @type: SoftwareApplication
  - Identifier: spelling
  - Name: spelling
  - Provider:
    - @id: https://cran.r-project.org
    - @type: Organization
    - Name: Comprehensive R Archive Network (CRAN)
    - Url: https://cran.r-project.org
  - Same as: https://CRAN.R-project.org/package=spelling
- - @type: SoftwareApplication
  - Identifier: testthat
  - Name: testthat
  - Version: >= 3.0
  - Provider:
    - @id: https://cran.r-project.org
    - @type: Organization
    - Name: Comprehensive R Archive Network (CRAN)
    - Url: https://cran.r-project.org
  - Same as: https://CRAN.R-project.org/package=testthat
- - @type: SoftwareApplication
  - Identifier: tiff
  - Name: tiff
  - Provider:
    - @id: https://cran.r-project.org
    - @type: Organization
    - Name: Comprehensive R Archive Network (CRAN)
    - Url: https://cran.r-project.org
  - Same as: https://CRAN.R-project.org/package=tiff
Software requirements:
- 1:
  - @type: SoftwareApplication
  - Identifier: R
  - Name: R
  - Version: >= 3.5
- 2:
  - @type: SoftwareApplication
  - Identifier: checkmate
  - Name: checkmate
  - Version: >= 1.9.3
  - Provider:
    - @id: https://cran.r-project.org
    - @type: Organization
    - Name: Comprehensive R Archive Network (CRAN)
    - Url: https://cran.r-project.org
  - Same as: https://CRAN.R-project.org/package=checkmate
- 3:
  - @type: SoftwareApplication
  - Identifier: cli
  - Name: cli
  - Provider:
    - @id: https://cran.r-project.org
    - @type: Organization
    - Name: Comprehensive R Archive Network (CRAN)
    - Url: https://cran.r-project.org
  - Same as: https://CRAN.R-project.org/package=cli
- 4:
  - @type: SoftwareApplication
  - Identifier: dplyr
  - Name: dplyr
  - Provider:
    - @id: https://cran.r-project.org
    - @type: Organization
    - Name: Comprehensive R Archive Network (CRAN)
    - Url: https://cran.r-project.org
  - Same as: https://CRAN.R-project.org/package=dplyr
- 5:
  - @type: SoftwareApplication
  - Identifier: fs
  - Name: fs
  - Version: >= 1.5
  - Provider:
    - @id: https://cran.r-project.org
    - @type: Organization
    - Name: Comprehensive R Archive Network (CRAN)
    - Url: https://cran.r-project.org
  - Same as: https://CRAN.R-project.org/package=fs
- 6:
  - @type: SoftwareApplication
  - Identifier: graphics
  - Name: graphics
- 7:
  - @type: SoftwareApplication
  - Identifier: grDevices
  - Name: grDevices
- 8:
  - @type: SoftwareApplication
  - Identifier: jsonlite
  - Name: jsonlite
  - Provider:
    - @id: https://cran.r-project.org
    - @type: Organization
    - Name: Comprehensive R Archive Network (CRAN)
    - Url: https://cran.r-project.org
  - Same as: https://CRAN.R-project.org/package=jsonlite
- 9:
  - @type: SoftwareApplication
  - Identifier: lubridate
  - Name: lubridate
  - Provider:
    - @id: https://cran.r-project.org
    - @type: Organization
    - Name: Comprehensive R Archive Network (CRAN)
    - Url: https://cran.r-project.org
  - Same as: https://CRAN.R-project.org/package=lubridate
- 10:
  - @type: SoftwareApplication
  - Identifier: magrittr
  - Name: magrittr
  - Version: >= 1.5
  - Provider:
    - @id: https://cran.r-project.org
    - @type: Organization
    - Name: Comprehensive R Archive Network (CRAN)
    - Url: https://cran.r-project.org
  - Same as: https://CRAN.R-project.org/package=magrittr
- 11:
  - @type: SoftwareApplication
  - Identifier: methods
  - Name: methods
- 12:
  - @type: SoftwareApplication
  - Identifier: purrr
  - Name: purrr
  - Provider:
    - @id: https://cran.r-project.org
    - @type: Organization
    - Name: Comprehensive R Archive Network (CRAN)
    - Url: https://cran.r-project.org
  - Same as: https://CRAN.R-project.org/package=purrr
- 13:
  - @type: SoftwareApplication
  - Identifier: readr
  - Name: readr
  - Provider:
    - @id: https://cran.r-project.org
    - @type: Organization
    - Name: Comprehensive R Archive Network (CRAN)
    - Url: https://cran.r-project.org
  - Same as: https://CRAN.R-project.org/package=readr
- 14:
  - @type: SoftwareApplication
  - Identifier: rlang
  - Name: rlang
  - Version: >= 1.0
  - Provider:
    - @id: https://cran.r-project.org
    - @type: Organization
    - Name: Comprehensive R Archive Network (CRAN)
    - Url: https://cran.r-project.org
  - Same as: https://CRAN.R-project.org/package=rlang
- 15:
  - @type: SoftwareApplication
  - Identifier: strex
  - Name: strex
  - Version: >= 1.5
  - Provider:
    - @id: https://cran.r-project.org
    - @type: Organization
    - Name: Comprehensive R Archive Network (CRAN)
    - Url: https://cran.r-project.org
  - Same as: https://CRAN.R-project.org/package=strex
- 16:
  - @type: SoftwareApplication
  - Identifier: stringr
  - Name: stringr
  - Version: >= 1.4
  - Provider:
    - @id: https://cran.r-project.org
    - @type: Organization
    - Name: Comprehensive R Archive Network (CRAN)
    - Url: https://cran.r-project.org
  - Same as: https://CRAN.R-project.org/package=stringr
- System requirements: fftw3, libtiff, libbz2, libdeflate, libjpeg, liblzma, libwebp, libzstd, X11, zlib
File size: 2861.236KB
Citation:
- - @type: ScholarlyArticle
  - Date published: 2018
  - Author:
    - - @type: Person
      - Given name: Rory
      - Family name: Nolan
    - - @type: Person
      - Given name: Sergi
      - Family name: Padilla-Parra
  - Name: ijtiff: An R package providing {TIFF} I/O for {ImageJ} users
  - Identifier: 10.21105/joss.00633
  - Pagination: 633
  - @id: https://doi.org/10.21105/joss.00633
  - Same as: https://doi.org/10.21105/joss.00633
  - Is part of:
    - @type: PublicationIssue
    - Issue number: 23
    - Date published: 2018
    - Is part of:
      - @type:
        PublicationVolume
        Periodical
      - Volume number: 3
      - Name: Journal of Open Source Software
Release notes: https://github.com/ropensci/ijtiff/blob/master/NEWS.md
Readme: https://github.com/ropensci/ijtiff/blob/master/README.md
Cont integration:
- https://github.com/ropensci/ijtiff/actions
- https://app.codecov.io/gh/ropensci/ijtiff
Development status: https://www.repostatus.org/#inactive
Keywords:
- r
- rstats
- tiff-files
- imagej
- tiff-images
- image-manipulation
- r-package
- peer-reviewed

Owner metadata:

Name: rOpenSci
Login: ropensci
Email: info@ropensci.org
Kind: organization
Description:
Website: https://ropensci.org/
Location: Berkeley, CA
Twitter: rOpenSci
Company:
Icon url: https://avatars.githubusercontent.com/u/1200269?v=4
Repositories: 307
Last Synced at: 2023-03-10T20:30:59.242Z
Profile URL: https://github.com/ropensci

GitHub Events

Total

Create event: 3
Delete event: 1
Issue comment event: 6
Issues event: 2
Pull request event: 1
Push event: 48
Release event: 2
Total: 63

Last Year

Create event: 3
Delete event: 1
Issue comment event: 6
Issues event: 2
Pull request event: 1
Push event: 48
Release event: 2
Total: 63

Committers metadata

Last synced: 8 months ago

Total Commits: 260
Total Committers: 5
Avg Commits per committer: 52.0
Development Distribution Score (DDS): 0.181

Commits in past year: 35
Committers in past year: 2
Avg Commits per committer in past year: 17.5
Development Distribution Score (DDS) in past year: 0.029

Name	Email	Commits
Rory Nolan	r**n@g**m	213
Rory Nolan	r**y@m**m	35
Jeroen Ooms	j**s@g**m	9
Maëlle Salmon	m**n@y**e	2
muschellij2	m**2@g**m	1

Issue and Pull Request metadata

Last synced: 9 months ago

Total issues: 17
Total pull requests: 8
Average time to close issues: 4 months
Average time to close pull requests: 9 days
Total issue authors: 12
Total pull request authors: 3
Average comments per issue: 4.06
Average comments per pull request: 2.5
Merged pull request: 7
Bot issues: 0
Bot pull requests: 0

Past year issues: 0
Past year pull requests: 2
Past year average time to close issues: N/A
Past year average time to close pull requests: about 5 hours
Past year issue authors: 0
Past year pull request authors: 1
Past year average comments per issue: 0
Past year average comments per pull request: 1.0
Past year merged pull request: 1
Past year bot issues: 0
Past year bot pull requests: 0

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/ropensci/ijtiff

Top Issue Authors

maelle (4)
rorynolan (2)
naikymen (2)
Marc-Girondot (1)
DaphneW-AkoyaBio (1)
horndog (1)
hadley (1)
sckott (1)
mirvie (1)
Enchufa2 (1)
gitdemont (1)
diuming (1)

Top Pull Request Authors

jeroen (6)
maelle (1)
muschellij2 (1)

Top Issue Labels

Top Pull Request Labels

Package metadata

Total packages: 1
Total downloads:
- cran: 1,064 last-month
Total docker downloads: 88,660
Total dependent packages: 5
Total dependent repositories: 6
Total versions: 39
Total maintainers: 1

cran.r-project.org: ijtiff

Comprehensive TIFF I/O with Full Support for 'ImageJ' TIFF Files

Homepage: https://docs.ropensci.org/ijtiff/
Documentation: http://cran.r-project.org/web/packages/ijtiff/ijtiff.pdf
Licenses: GPL-3
Latest release: 3.2.0 (published 5 months ago)
Last Synced: 2026-05-11T12:47:49.505Z (about 1 month ago)
Versions: 39
Dependent Packages: 5
Dependent Repositories: 6
Downloads: 1,064 Last month
Docker Downloads: 88,660
Rankings:
- Docker downloads count: 0.044%
- Forks count: 6.826%
- Dependent packages count: 8.153%
- Average: 8.912%
- Dependent repos count: 11.912%
- Stargazers count: 12.542%
- Downloads: 13.993%
Maintainers (1)
- rorynoolan@gmail.com

Dependencies

DESCRIPTION cran

R >= 3.5 depends
checkmate >= 1.9.3 imports
cli * imports
dplyr * imports
fs >= 1.3.1 imports
grDevices * imports
graphics * imports
magrittr >= 1.5 imports
methods * imports
purrr * imports
readr * imports
rlang >= 0.3.3 imports
strex >= 1.4.1 imports
stringr >= 1.4 imports
withr >= 2.1 imports
zeallot * imports
EBImage * suggests
abind * suggests
covr * suggests
knitr * suggests
mockery * suggests
pacman * suggests
rmarkdown * suggests
rprojroot * suggests
spelling * suggests
testthat >= 2.1 suggests
tiff * suggests
vdiffr * suggests

.github/workflows/check-standard.yaml actions

actions/checkout v3 composite
r-lib/actions/check-r-package v2 composite
r-lib/actions/setup-pandoc v2 composite
r-lib/actions/setup-r v2 composite
r-lib/actions/setup-r-dependencies v2 composite

.github/workflows/test-coverage.yaml actions

actions/checkout v3 composite
actions/upload-artifact v3 composite
r-lib/actions/setup-r v2 composite
r-lib/actions/setup-r-dependencies v2 composite

ecosyste.ms

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Summary