MCMCvis

Score: 15.620640246130503

Last synced: about 8 hours ago
JSON representation

Repository metadata:

R package to visualize, manipulate, and summarize MCMC output

Host: GitHub
URL: https://github.com/caseyyoungflesh/MCMCvis
Owner: caseyyoungflesh
License: gpl-3.0
Created: 2016-03-23T07:01:17.000Z (over 10 years ago)
Default Branch: master
Last Pushed: 2025-11-26T00:02:16.000Z (7 months ago)
Last Synced: 2026-06-09T17:04:57.232Z (14 days ago)
Language: HTML
Homepage:
Size: 38.1 MB
Stars: 39
Watchers: 3
Forks: 4
Open Issues: 3
Metadata Files:
- Readme: README.md
- Changelog: NEWS.md
- License: LICENSE.md
- Codemeta: codemeta.json

CodeMeta metadata:

@context: https://doi.org/10.5063/schema/codemeta-2.0
@type: SoftwareSourceCode
Identifier: MCMCvis
Description: Performs key functions for MCMC analysis using minimal code - visualizes, manipulates, and summarizes MCMC output. Functions support simple and straightforward subsetting of model parameters within the calls, and produce presentable and 'publication-ready' output. MCMC output may be derived from Bayesian model output fit with Stan, NIMBLE, JAGS, and other software.
Name: MCMCvis: Tools to Visualize, Manipulate, and Summarize MCMC Output
Code repository: https://github.com/caseyyoungflesh/MCMCvis
Issue tracker: https://github.com/caseyyoungflesh/MCMCvis/issues
License: https://spdx.org/licenses/GPL-3.0
Version: 0.16.5
Programming language:
- @type: ComputerLanguage
- Name: R
- Url: https://r-project.org
Runtime platform: R version 4.5.2 (2025-10-31)
Provider:
- @id: https://cran.r-project.org
- @type: Organization
- Name: Comprehensive R Archive Network (CRAN)
- Url: https://cran.r-project.org
Author:
- - @type: Person
  - Given name: Casey
  - Family name: Youngflesh
  - Email: caseyyoungflesh@gmail.com
  - @id: https://orcid.org/0000-0001-6343-3311
- - @type: Person
  - Given name: Christian
  - Family name: Che-Castaldo
  - Email: christian.che-castaldo@stonybrook.edu
  - @id: https://orcid.org/0000-0002-7670-2178
Contributor:
- - @type: Person
  - Given name: Tyler
  - Family name: Hardy
Maintainer:
- - @type: Person
  - Given name: Casey
  - Family name: Youngflesh
  - Email: caseyyoungflesh@gmail.com
  - @id: https://orcid.org/0000-0001-6343-3311
Software suggestions:
- - @type: SoftwareApplication
  - Identifier: knitr
  - Name: knitr
  - Provider:
    - @id: https://cran.r-project.org
    - @type: Organization
    - Name: Comprehensive R Archive Network (CRAN)
    - Url: https://cran.r-project.org
  - Same as: https://CRAN.R-project.org/package=knitr
- - @type: SoftwareApplication
  - Identifier: rmarkdown
  - Name: rmarkdown
  - Provider:
    - @id: https://cran.r-project.org
    - @type: Organization
    - Name: Comprehensive R Archive Network (CRAN)
    - Url: https://cran.r-project.org
  - Same as: https://CRAN.R-project.org/package=rmarkdown
- - @type: SoftwareApplication
  - Identifier: testthat
  - Name: testthat
  - Provider:
    - @id: https://cran.r-project.org
    - @type: Organization
    - Name: Comprehensive R Archive Network (CRAN)
    - Url: https://cran.r-project.org
  - Same as: https://CRAN.R-project.org/package=testthat
- - @type: SoftwareApplication
  - Identifier: cmdstanr
  - Name: cmdstanr
  - Version: >= 0.5.0
- - @type: SoftwareApplication
  - Identifier: posterior
  - Name: posterior
  - Provider:
    - @id: https://cran.r-project.org
    - @type: Organization
    - Name: Comprehensive R Archive Network (CRAN)
    - Url: https://cran.r-project.org
  - Same as: https://CRAN.R-project.org/package=posterior
Software requirements:
- 1:
  - @type: SoftwareApplication
  - Identifier: coda
  - Name: coda
  - Provider:
    - @id: https://cran.r-project.org
    - @type: Organization
    - Name: Comprehensive R Archive Network (CRAN)
    - Url: https://cran.r-project.org
  - Same as: https://CRAN.R-project.org/package=coda
- 2:
  - @type: SoftwareApplication
  - Identifier: rstan
  - Name: rstan
  - Provider:
    - @id: https://cran.r-project.org
    - @type: Organization
    - Name: Comprehensive R Archive Network (CRAN)
    - Url: https://cran.r-project.org
  - Same as: https://CRAN.R-project.org/package=rstan
- 3:
  - @type: SoftwareApplication
  - Identifier: methods
  - Name: methods
- 4:
  - @type: SoftwareApplication
  - Identifier: overlapping
  - Name: overlapping
  - Provider:
    - @id: https://cran.r-project.org
    - @type: Organization
    - Name: Comprehensive R Archive Network (CRAN)
    - Url: https://cran.r-project.org
  - Same as: https://CRAN.R-project.org/package=overlapping
- 5:
  - @type: SoftwareApplication
  - Identifier: colorspace
  - Name: colorspace
  - Provider:
    - @id: https://cran.r-project.org
    - @type: Organization
    - Name: Comprehensive R Archive Network (CRAN)
    - Url: https://cran.r-project.org
  - Same as: https://CRAN.R-project.org/package=colorspace
- 6:
  - @type: SoftwareApplication
  - Identifier: R
  - Name: R
  - Version: >= 3.5.0
- System requirements:
File size: 3422.589KB
Citation:
- - @type: ScholarlyArticle
  - Date published: 2018
  - Author:
    - - @type: Person
      - Given name: Casey
      - Family name: Youngflesh
  - Name: MCMCvis: Tools to visualize, manipulate, and summarize MCMC output
  - Identifier: 10.21105/joss.00640
  - Pagination: 640
  - @id: https://doi.org/10.21105/joss.00640
  - Same as: https://doi.org/10.21105/joss.00640
  - Is part of:
    - @type: PublicationIssue
    - Issue number: 24
    - Date published: 2018
    - Is part of:
      - @type:
        PublicationVolume
        Periodical
      - Volume number: 3
      - Name: Journal of Open Source Software
Release notes: https://github.com/caseyyoungflesh/MCMCvis/blob/main/NEWS.md
Readme: https://github.com/caseyyoungflesh/MCMCvis/blob/master/README.md
Related link: https://CRAN.R-project.org/package=MCMCvis

Owner metadata:

Name: Casey Youngflesh
Login: caseyyoungflesh
Email:
Kind: user
Description: Quantitative Ecology | Global Change | Population Biology | Biodiversity
Website: www.caseyyoungflesh.com
Location:
Twitter: caseyyoungflesh
Company: Michigan State University
Icon url: https://avatars.githubusercontent.com/u/11355842?u=544b6ce33cb3c418a97d665f0e9c0046ab1ca1c4&v=4
Repositories: 2
Last Synced at: 2023-02-28T00:12:40.020Z
Profile URL: https://github.com/caseyyoungflesh

GitHub Events

Total

Issue comment event: 2
Issues event: 4
Push event: 5
Release event: 1
Watch event: 2
Total: 14

Last Year

Push event: 4
Release event: 1
Watch event: 1
Total: 6

Committers metadata

Last synced: 3 days ago

Total Commits: 722
Total Committers: 6
Avg Commits per committer: 120.333
Development Distribution Score (DDS): 0.355

Commits in past year: 10
Committers in past year: 1
Avg Commits per committer in past year: 10.0
Development Distribution Score (DDS) in past year: 0.0

Name	Email	Commits
Casey Youngflesh	c**h@g**m	466
Casey Youngflesh	c**h@s**u	224
CCheCastaldo	c**b@i**m	19
Christian Che-Castaldo	c**o@i**m	10
Tyler Hardy	t**y@e**u	2
Caseyyoungflesh	C**h@s**u	1

Issue and Pull Request metadata

Last synced: 12 days ago

Total issues: 72
Total pull requests: 5
Average time to close issues: 8 months
Average time to close pull requests: about 22 hours
Total issue authors: 12
Total pull request authors: 2
Average comments per issue: 1.42
Average comments per pull request: 1.0
Merged pull request: 5
Bot issues: 0
Bot pull requests: 0

Past year issues: 2
Past year pull requests: 0
Past year average time to close issues: 3 months
Past year average time to close pull requests: N/A
Past year issue authors: 2
Past year pull request authors: 0
Past year average comments per issue: 1.0
Past year average comments per pull request: 0
Past year merged pull request: 0
Past year bot issues: 0
Past year bot pull requests: 0

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/caseyyoungflesh/MCMCvis

Top Issue Authors

caseyyoungflesh (58)
HAB1990 (3)
jcavieresg (2)
rebeccaltaylor (1)
emmatalis (1)
johnnymdoubleu (1)
jkarreth (1)
kalebentley (1)
dslramsey (1)
ceciliaOLearySBU (1)
tlyons253 (1)
CCheCastaldo (1)

Top Pull Request Authors

caseyyoungflesh (4)
tylerthardy (1)

Top Issue Labels

enhancement (29)
bug (15)
Priority (11)

Top Pull Request Labels

Package metadata

Total packages: 1
Total downloads:
- cran: 1,615 last-month
Total docker downloads: 22,502
Total dependent packages: 2
Total dependent repositories: 6
Total versions: 27
Total maintainers: 1

cran.r-project.org: MCMCvis

Tools to Visualize, Manipulate, and Summarize MCMC Output

Homepage: https://github.com/caseyyoungflesh/MCMCvis
Documentation: http://cran.r-project.org/web/packages/MCMCvis/MCMCvis.pdf
Licenses: GPL-3
Latest release: 0.16.5 (published 7 months ago)
Last Synced: 2026-06-19T22:00:46.673Z (3 days ago)
Versions: 27
Dependent Packages: 2
Dependent Repositories: 6
Downloads: 1,615 Last month
Docker Downloads: 22,502
Rankings:
- Docker downloads count: 0.579%
- Stargazers count: 8.985%
- Average: 9.98%
- Downloads: 10.463%
- Dependent repos count: 11.963%
- Dependent packages count: 13.676%
- Forks count: 14.211%
Maintainers (1)
- caseyyoungflesh@gmail.com

Dependencies

DESCRIPTION cran

R >= 3.5.0 depends
coda * imports
colorspace * imports
methods * imports
overlapping * imports
rstan * imports
knitr * suggests
rmarkdown * suggests
testthat * suggests

ecosyste.ms

Data

Tools

Indexes

Applications

Experiments

Summary