https://github.com/musoke/UltraDark.jl

Simulations of cosmological scalar fields

cosmology dark-matter julia reheating scalar-dark-matter

Last synced: 21 Aug 2026

https://github.com/karlotness/adrt

Fast approximate discrete Radon transform for NumPy arrays

Last synced: 20 Aug 2026

https://github.com/WRF-CMake/WRF

🌀 The Weather Research and Forecasting (WRF) model with CMake support

atmospheric-modelling atmospheric-science cmake fortran grib hpc hpc-applications linux macos meteorology netcdf numerical-modelling nwp research scientific-computations scientific-computing weather weather-forecast windows wrf

Last synced: 20 Aug 2026

https://github.com/jonbmartin/pulpy

Pulses in Python

Last synced: 20 Aug 2026

https://github.com/HoBeZwe/SphericalScattering.jl

This package provides semi-analytical solutions to the scattering of time harmonic and static electromagnetic fields from spherical objects.

dipole electromagnetics fitzgerald hertzian julia mie-scattering mie-series plane-wave ring-current scattering sphere spherical spherical-waves time-harmonic

Last synced: 21 Aug 2026

https://github.com/lanl/singularity-eos

Performance portable equations of state and mixed cell closures

Last synced: 20 Aug 2026

https://github.com/sblunt/orbitize

Orbit-fitting for directly imaged objects

Last synced: 20 Aug 2026

https://github.com/dflemin3/approxposterior

A Python package for approximate Bayesian inference and optimization using Gaussian processes

approximate-inference bayesian-inference bayesian-optimization gaussian-processes inference python

Last synced: 20 Aug 2026

https://github.com/lucianolorenti/ceruleo

CeRULEo: Comprehensive utilitiEs for Remaining Useful Life Estimation methOds

predictive-maintenance remaining-useful-life remaining-useful-life-prediction time-series

Last synced: 21 Aug 2026

https://github.com/NLESC-JCER/QMCTorch

Pytorch Implementation of Real Space Quantum Monte Carlo Simulations of Molecular Systems

Last synced: 21 Aug 2026

https://github.com/osorensen/hdme

R-package containing penalized regression methods for High-Dimensional Measurement Error problems (errors-in-variables)

Last synced: 20 Aug 2026

https://github.com/FraunhoferIWES/iwopy

Fraunhofer IWES optimization tools in Python

Last synced: 20 Aug 2026

https://github.com/COVID-IWG/epimargin

networked, stochastic SIRD epidemiological model with Bayesian parameter estimation and policy scenario comparison tools

bayesian-methods covid19 india sird-model stochastic-modeling

Last synced: 21 Aug 2026

https://github.com/o2r-project/containerit/

Package an R workspace and all dependencies as a Docker container

docker dockerfile r reproducible-research reproducible-science

Last synced: 20 Aug 2026

https://github.com/PhysicsOfMobility/ridepy

Simulates a dispatching algorithm serving exogenous transportation requests with a fleet of vehicles. Does not simulate the universe, unlike MATSim. Batteries are included.

research ridepooling simulation

Last synced: 21 Aug 2026

https://github.com/tongzhouxu/mashpit

:pencil: Sketch-based surveillance platform

Last synced: 21 Aug 2026

https://github.com/axopy/axopy

A Python Library for Implementing Human-Computer Interface Experiments

brain-computer-interface electrophysiology experiment-design gui human-computer-interaction prosthetics qt

Last synced: 20 Aug 2026

https://github.com/WMD-group/SMACT/

Python package to aid materials design and informatics

computational-chemistry machine-learning materials-design materials-informatics materials-science materials-screening python

Last synced: 20 Aug 2026

https://github.com/camillescott/shmlast

blast, shmlast

Last synced: 20 Aug 2026

https://github.com/h5preserve/h5preserve

Thin wrapper around h5py and HDF5, inspired by camel

hdf5 python

Last synced: 20 Aug 2026

https://github.com/JulienPeloton/s4cmb

Simulation of instrumental systematic effects in the context of CMB observations

cmb instrument simulation systematics

Last synced: 20 Aug 2026

https://github.com/tumcms/Open-Infra-Platform

This is the official repository of the open-source Open Infra Platform software (as of April 2020).

boost building-information-modelling ifc infrastructure okstra point-cloud

Last synced: 21 Aug 2026

https://github.com/cumbof/hdlib

Hyperdimensional Computing Library for building Vector-Symbolic Architectures in Python 3

hyperdimensional-computing library machine-learning python vector-symbolic-architectures vectors

Last synced: 21 Aug 2026

https://github.com/IMMM-SFA/cerf

The Capacity Expansion Regional Feasibility (CERF) model

Last synced: 21 Aug 2026

https://github.com/xinyiguan/py2lispIDyOM

A Python package for IDyOM

Last synced: 21 Aug 2026

https://github.com/Cambridge-ICCS/FTorch

A library for directly calling PyTorch ML models from Fortran.

deep-learning fortran hacktoberfest interoperability libtorch machine-learning python pytorch torch

Last synced: 21 Aug 2026

https://github.com/m-dadej/MarSwitching.jl

MarSwitching.jl: Julia package for Markov switching dynamic models :chart_with_upwards_trend:

data-science econometrics julia machine-learning markov-chain statistics time-series

Last synced: 21 Aug 2026

https://github.com/AP6YC/AdaptiveResonance.jl

A Julia package for Adaptive Resonance Theory (ART) algorithms.

julia machine-learning

Last synced: 21 Aug 2026

https://github.com/MikeSWang/Triumvirate

A Python/C++ package for three-point clustering measurements in LSS analyses

clustering-statistics cpp cuda cython hip large-scale-structure-cosmology python

Last synced: 20 Aug 2026

https://github.com/covid19datahub/COVID19/

A worldwide epidemiological database for COVID-19 at fine-grained spatial resolution

2019-ncov coronavirus covid-19 covid-data covid19-data r

Last synced: 20 Aug 2026

https://github.com/AkchurinDA/Fortuna.jl

General-purpose package for structural and system reliability analysis purely written in the Julia programming language.

structural-engineering structural-reliability system-reliability uncertainty-quantification

Last synced: 21 Aug 2026

https://github.com/SotaYoshida/NuclearToolkit.jl

NuclearToolkit.jl: Julia package for nuclear structure calculations

Last synced: 20 Aug 2026

https://github.com/andrewjpage/tiptoft

Predict plasmids from uncorrected long read data

bioinformatics bioinformatics-pipeline genomics global-health infectious-diseases kmer long-reads nanopore oxford-nanopore pacbio pathogen plasmid plasmidfinder research uncorrected

Last synced: 20 Aug 2026

https://gitlab.com/davidtourigny/dynamic-fba

dFBA dynamic FBA dynamic flux-balance analysis

Last synced: 20 Aug 2026

https://github.com/VNNikolaidis/nnlib2Rcpp

An R package for Neural Nets created using nnlib2

Last synced: 21 Aug 2026

https://gitlab.com/utopia-project/utopia

Utopia is a comprehensive modelling framework for complex adaptive systems.

C++ complex systems complex-adaptive-systems hdf5 modelling python simulation simulation-framework utopia-project

Last synced: 21 Aug 2026

https://github.com/worlddynamics/WorldDynamics.jl

An open-source framework written in Julia for global integrated assessment models.

hacktoberfest integrated-assessment-model julia sciml simulation world3

Last synced: 21 Aug 2026

https://github.com/jakobbossek/mcMST

Algorithms to solve the multi-criteria minimum spanning tree problem (mcMST) in R

cran evolutionary-algorithms mcmst minimum-spanning-trees multi-objective-optimization r spanningtrees

Last synced: 20 Aug 2026

https://github.com/harrispopgen/mutyper

Ancestral k-mer mutation types for SNP data

Last synced: 20 Aug 2026

https://github.com/kevin218/Eureka

Eureka! is a data reduction and analysis pipeline intended for time-series observations with JWST and HST.

exoplanets jwst python

Last synced: 20 Aug 2026

https://github.com/moead-framework/framework

MOEA/D is a general-purpose algorithm framework. It decomposes a multi-objective optimization problem into a number of single-objective optimization sub-problems and then uses a search heuristic to optimize these sub-problems simultaneously and cooperatively.

framework modular-framework moea moead multi-objective multi-objective-optimization operations-research pypi python

Last synced: 20 Aug 2026

https://github.com/felixludos/omni-fig

Unleashing Project Configuration and Organization in Python

configuration package python

Last synced: 21 Aug 2026

https://github.com/qurit/rt-utils

A minimal Python library to facilitate the creation and manipulation of DICOM RTStructs.

ai binary-masks dicom mask medical-image-processing medical-imaging nuclear-medicine pydicom roi rt-structs rt-utils rtstruct typed

Last synced: 21 Aug 2026

https://github.com/thesketh/pygen-structures

3D molecular structure generation for MD simulation

Last synced: 20 Aug 2026

https://github.com/mattpitkin/lintegrate

A numerical integration routine that works for the natural logarithm of functions

gsl gsl-functions integral python wrapper

Last synced: 21 Aug 2026

https://github.com/grburgess/popsynth

A generic flux/parameter population synthesis code

astronomy astrophysics population population-synthesis simulation statistics

Last synced: 20 Aug 2026

https://github.com/DedalusProject/eigentools

The Eigentools package for Dedalus

Last synced: 20 Aug 2026

https://github.com/openscm/openscm-twolayermodel

Implementations of two-layer models by Held et al. and Geoffroy et al.

Last synced: 20 Aug 2026

https://github.com/chenyangkang/stemflow

A Python Package for Adaptive Spatio-Temporal Exploratory Model (AdaSTEM)

adaptive-spatio-temporal-exploratory-model animal animal-movement big-data biodiversity biogeography bird-migration bird-survey ebird ecology ecology-modelling geospatial machine-learning movement movement-ecology ornithology spatio-temporal-analysis spatiotemporal spatiotemporal-dynamics species-distribution-modeling

Last synced: 21 Aug 2026

https://github.com/sisl/ExpFamilyPCA.jl

A Julia package for exponential family principal component analysis (EPCA).

compression compression-algorithm denoising dimensionality-reduction epca exponential-family interpretability julia machine-learning pca principal-component-analysis reinforcement-learning signal-processing

Last synced: 21 Aug 2026

https://github.com/BattModels/asimtools

Optimized workflow management and script handling for atomistic simulations

Last synced: 20 Aug 2026

https://github.com/IlianPihlajamaa/ModeCouplingTheory.jl

A generic and fast solver of mode-coupling theory-like integrodifferential equations

differential-equations julia

Last synced: 21 Aug 2026

https://github.com/pjamesjoyce/lcopt

Create foreground LCA models via an intuitive user interface and analyse them using Brightway2

brightway2 foreground-models gui lca python

Last synced: 20 Aug 2026

https://github.com/solids4foam/solids4foam

The official repository for solids4foam

finite-volume-method fluid-solid-interaction openfoam petsc solid-mechanics

Last synced: 21 Aug 2026

https://github.com/GRTLCollaboration/GRChombo

An AMR based open-source code for numerical relativity simulations.

Last synced: 21 Aug 2026

https://github.com/whimian/pyGeoPressure

Pore pressure prediction using seismic velocity and well log data

formation-pressure geomechancis geophysics geopressure pore-pressure-prediction

Last synced: 20 Aug 2026

https://github.com/MaceKuailv/seaduck

A python package that interpolates data from ocean dataset from both Eulerian and Lagrangian perspective.

Last synced: 21 Aug 2026

https://github.com/BlackHolePerturbationToolkit/KerrGeoPy

Python library for computing properties of stable and plunging orbits around a spinning black hole

Last synced: 21 Aug 2026

https://github.com/weblyzard/inscriptis/

A python based HTML to text conversion library, command line client and Web service.

client converter html html2text library python web-service

Last synced: 20 Aug 2026

https://github.com/mathLab/PyDMD

mathLab mirror of Python Dynamic Mode Decomposition

Last synced: 20 Aug 2026

https://github.com/maps-as-data/MapReader

A computer vision pipeline for exploring and analyzing images at scale

article computer-vision deep-learning digital-humanities hut23 hut23-96 machine-learning maps pytorch spatial-data

Last synced: 20 Aug 2026

https://github.com/AMReX-Astro/Nyx

An adaptive mesh, N-body hydro cosmological simulation code

amrex cosmology

Last synced: 20 Aug 2026

https://github.com/pwollstadt/IDTxl

The Information Dynamics Toolkit xl (IDTxl) is a comprehensive software package for efficient inference of networks and their node dynamics from multivariate time series data using information theory.

active-information-storage complex-systems information-theory partial-information-decomposition transfer-entropy

Last synced: 20 Aug 2026

https://github.com/mcgalcode/pylattica

A simple framework for prototyping lattice evolution simulations e.g. cellular automata, lattice gas simulations, lattice Monte Carlo etc.

chemistry lattice materials-science simulation

Last synced: 21 Aug 2026

https://github.com/smillerc/CurvilinearGrids.jl

A Julia library for working with curvilinear grids

cfd julia mesh-generation pde

Last synced: 21 Aug 2026

https://github.com/astro-informatics/sleplet

Slepian Scale-Discretised Wavelets in Python

hacktoberfest manifolds python slepian-functions sphere wavelets

Last synced: 20 Aug 2026

https://github.com/webbjj/clustertools

A Python package with tools for analysing star clusters.

Last synced: 20 Aug 2026

https://github.com/sdwfrost/Gillespie.jl

Stochastic Gillespie-type simulations using Julia

Last synced: 20 Aug 2026

https://github.com/sinanozaydin/pide

A python library for petrophysical calculations of lithosphere-scale problems.

Last synced: 21 Aug 2026

https://github.com/neuroneural/brainchop

Brainchop: In-browser 3D MRI rendering and segmentation

3d-segmentation deep-learning frontend-app javascript medical-imaging mri mri-segmentation neuroimaging pyodide tensorflowjs three-js

Last synced: 20 Aug 2026

https://github.com/onnela-lab/beiwe-backend

Beiwe is a smartphone-based digital phenotyping research platform. This is the Beiwe backend code

Last synced: 20 Aug 2026

https://github.com/mirzaevinom/egtplot

egtplot: A python package for 3-Strategy Evolutionary Games

dynamical-systems evolutionary-game-theory game-theory visualization

Last synced: 20 Aug 2026

https://github.com/ZeitgeberH/patchview

python toolkits and GUI for multi-patch whole-cell data analysis and visualization

data-analysis data-visualization neuroscience patch-clamp-recordings

Last synced: 21 Aug 2026

https://github.com/ShanaScogin/modeLLtest

An R Package for tests comparing cross validated log likelihood (CVLL) estimates

Last synced: 20 Aug 2026

https://github.com/singularityhub/sregistry

server for storage and management of singularity images

containers management registry singularity singularity-containers singularityhub

Last synced: 20 Aug 2026

https://github.com/annajenul/UBayFS

UBayFS implements the UBayFS feature selection framework, together with an interactive Shiny dashbord.

bayesian-statistics ensemble-models feature-selection r user-knowledge

Last synced: 20 Aug 2026

https://github.com/flekschas/jupyter-scatter/

Interactive 2D scatter plot widget for Jupyter Lab and Notebook. Scales to millions of points!

jupyter-notebook-extension jupyterlab-extension scatter-plot visualization

Last synced: 21 Aug 2026

https://github.com/GeodynamicWorldBuilder/WorldBuilder/

World Builder: An initial conditions generator for geodynamic modeling

Last synced: 20 Aug 2026

https://github.com/stinefm/relsad

A Python package for reliability assessment of modern distribution systems.

electrical-power-engineering reliability

Last synced: 20 Aug 2026

https://github.com/ColemanRHarris/mxnorm

R package to normalize multiplexed imaging data.

cran package r

Last synced: 21 Aug 2026

https://github.com/heli-xu/findSVI

Calculate CDC/ATSDR Social Vulnerability Index

Last synced: 20 Aug 2026

https://github.com/IceKhan13/purplecaffeine

Project is aimed to create simple general interface to track quantum experiments, store and search them in an easy way.

experiments qiskit quantum-computing tracking

Last synced: 21 Aug 2026

https://github.com/bjmorgan/bsym

A Basic Symmetry Module (Python)

Last synced: 20 Aug 2026

https://github.com/Open-Minds-Lab/MRdataset

MRdataset : unified interface to various neuroimaging dataset formats

mri neuroimaging neuroscience niqc quality-control

Last synced: 21 Aug 2026

https://github.com/BirolLab/btllib

📚Bioinformatics Technology Lab common code library

algorithms bioinformatics bloom-filter cpp data-structures genome library python

Last synced: 21 Aug 2026

https://github.com/ropensci/tacmagic

tacmagic: PET Analysis in R

mri neuroimaging neuroscience neuroscience-methods pet pet-mr positron positron-emission-tomography r statistics

Last synced: 20 Aug 2026

https://github.com/elizabethnewman/hessQuik

Computing gradients and Hessians of feed-forward networks with GPU acceleration

derivatives gpu-acceleration neural-network

Last synced: 21 Aug 2026

https://github.com/SYalouz/QuantNBody

QuantNBody : a python package for quantum chemistry/physics to manipulate many-body operators and wave functions.

Last synced: 20 Aug 2026

https://github.com/JGCRI/tethys

Spatiotemporal downscaling model for global water use

gcam gcims

Last synced: 21 Aug 2026

https://github.com/usnistgov/imppy3d

Image processing in python for 3d image stacks

Last synced: 21 Aug 2026

https://github.com/elliohow/fMRI_ROI_Analysis_Tool

An analysis tool that uses per-voxel statistical maps in conjunction with FSL atlases to create per-region statistical maps. Current usage includes the creation of regional maps of temporal signal to noise ratio.

brain-imaging fmri fmri-preprocessing fmri-roi-analysis neuroimaging python

Last synced: 20 Aug 2026

https://github.com/JohannesBuchner/UltraNest/

Fit and compare complex models reliably and rapidly. Advanced nested sampling.

model-selection monte-carlo nested-sampling parallel-computing python

Last synced: 20 Aug 2026

https://github.com/kLabUM/rrcf

🌲 Implementation of the Robust Random Cut Forest algorithm for anomaly detection on streams

anomaly-detection detect-outliers machine-learning outliers python random-forest robust-random-cut-forest streaming-data tree

Last synced: 20 Aug 2026

https://github.com/llrs/experDesign

Design experiments distributed in several batches

batch cran experiment-design r r-package rstats

Last synced: 20 Aug 2026

https://github.com/groupmm/libsoni

A Python Toolbox for Sonifying Music Annotations and Feature Representations

audio mir sonification

Last synced: 21 Aug 2026

https://github.com/CM2S/piglot

A package for the optimisation of numerical responses

bayesian-optimization optimisation parameter-identification physics-solvers python

Last synced: 20 Aug 2026

https://github.com/JuliaSmoothOptimizers/PDENLPModels.jl

A NLPModel API for optimization problems with PDE-constraints

Last synced: 20 Aug 2026

https://github.com/bebatut/enasearch

A Python library for interacting with ENA's API

api api-client ena

Last synced: 20 Aug 2026

https://github.com/bessagroup/CRATE

CRATE: Accurate and efficient clustering-based nonlinear analysis of heterogeneous materials through computational homogenization

clustering-analysis computational-homogenization computational-mechanics material-modelling

Last synced: 21 Aug 2026

https://github.com/kdm9/Acanthophis

A comprehensive, opinionated plant metagenomics and variant calling pipeline in Snakemake

Last synced: 21 Aug 2026