JOSS: https://github.com/camillescott/shmlast
Score: 8.508959386489135
Last synced: about 22 hours ago
JSON representation
Repository metadata:
blast, shmlast
- Host: GitHub
- URL: https://github.com/camillescott/shmlast
- Owner: camillescott
- License: other
- Created: 2016-04-07T01:22:16.000Z (about 10 years ago)
- Default Branch: master
- Last Pushed: 2020-10-05T21:51:38.000Z (over 5 years ago)
- Last Synced: 2026-01-14T11:28:58.196Z (5 months ago)
- Language: Python
- Homepage:
- Size: 6.07 MB
- Stars: 21
- Watchers: 2
- Forks: 8
- Open Issues: 8
-
Metadata Files:
- Readme: README.md
- Contributing: CONTRIBUTING.md
- License: LICENSE
- Codemeta: codemeta.json
CodeMeta metadata:
- @context: https://raw.githubusercontent.com/mbjones/codemeta/master/codemeta.json
- @type: Code
- Author:
- @id: http://orcid.org/0000-0001-8822-8779
- @type: Person
- Email: camille.scott.w@gmail.com
- Name: Camille Scott
- Affiliation: University of California, Davis
- Identifier:
- Code repository: https://github.com/camillescott/shmlast
- Date published: 2016-11-21
- Date modified: 2016-11-21
- Date created: 2016-11-21
- Description: An improved implementation of Conditional Reciprocal Best Hits with LAST and Python.
- Keywords: bioinformatics, orthology, alignment, LAST, BLAST, python
- License: BSD-3-Clause
- Title: shmlast
- Version: v1.4
Owner metadata:
- Name: Camille Scott
- Login: camillescott
- Email:
- Kind: user
- Description: Sys Admin @ucdavis High Performance Compute Core Facility; formerly @dib-lab
- Website: http://www.camillescott.org
- Location: Davis, CA
- Twitter:
- Company:
- Icon url: https://avatars.githubusercontent.com/u/2896301?u=bd57c546510c131f4f7f41e3999fb8e6e33a2298&v=4
- Repositories: 41
- Last Synced at: 2023-04-06T05:40:20.387Z
- Profile URL: https://github.com/camillescott
GitHub Events
Total
- Fork event: 1
- Watch event: 1
- Total: 2
Last Year
- Fork event: 1
- Watch event: 1
- Total: 2
Committers metadata
Last synced: 6 months ago
Total Commits: 160
Total Committers: 3
Avg Commits per committer: 53.333
Development Distribution Score (DDS): 0.012
Commits in past year: 0
Committers in past year: 0
Avg Commits per committer in past year: 0.0
Development Distribution Score (DDS) in past year: 0.0
| Name | Commits | |
|---|---|---|
| Camille Scott | c****w@g****m | 158 |
| Luiz Irber | l****r@g****m | 1 |
| C. Titus Brown | t****s@i****g | 1 |
Issue and Pull Request metadata
Last synced: 10 months ago
Total issues: 7
Total pull requests: 5
Average time to close issues: 4 months
Average time to close pull requests: about 1 month
Total issue authors: 6
Total pull request authors: 4
Average comments per issue: 0.29
Average comments per pull request: 1.6
Merged pull request: 2
Bot issues: 0
Bot pull requests: 0
Past year issues: 0
Past year pull requests: 0
Past year average time to close issues: N/A
Past year average time to close pull requests: N/A
Past year issue authors: 0
Past year pull request authors: 0
Past year average comments per issue: 0
Past year average comments per pull request: 0
Past year merged pull request: 0
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- ctb (2)
- camillescott (1)
- jefdaj (1)
- macmanes (1)
- hydrahamster (1)
- halexand (1)
Top Pull Request Authors
- ctb (2)
- bluegenes (1)
- johnsolk (1)
- luizirber (1)
Top Issue Labels
Top Pull Request Labels
Package metadata
- Total packages: 1
-
Total downloads:
- pypi: 55 last-month
- Total dependent packages: 0
- Total dependent repositories: 1
- Total versions: 8
- Total maintainers: 1
pypi.org: shmlast
An improved implementation of Conditional Reciprocal Best Hits with LAST and Python.
- Homepage: https://github.com/camillescott/shmlast
- Documentation: https://shmlast.readthedocs.io/
- Licenses: BSD
- Latest release: 1.2.1 (published over 8 years ago)
- Last Synced: 2025-12-14T03:18:42.303Z (6 months ago)
- Versions: 8
- Dependent Packages: 0
- Dependent Repositories: 1
- Downloads: 55 Last month
-
Rankings:
- Dependent packages count: 10.002%
- Forks count: 12.545%
- Stargazers count: 13.104%
- Average: 20.206%
- Dependent repos count: 21.718%
- Downloads: 43.658%
- Maintainers (1)
Dependencies
- doit >=0.29.0
- ficus >=0.5
- filelock >=2.0.6
- matplotlib >=1.5.1
- numpy >=1.9.0
- ope >=0.6
- pandas >=0.17.0
- pytest <4
- pytest-benchmark *
- scipy >=0.16.0
- screed >=0.9
- seaborn >=0.6.0
- doit >=0.29.0 development
- ficus >=0.5 development
- filelock >=2.0.6 development
- matplotlib >=1.5.1 development
- numpy >=1.9.0 development
- ope >=0.6 development
- pandas >=0.17.0 development
- psutil * development
- pytest <4 development
- pytest-benchmark * development
- scipy >=0.16.0 development
- screed >=0.9 development
- seaborn >=0.6.0 development
- doit *
- ficus *
- filelock *
- matplotlib *
- numpy *
- ope *
- pandas *
- scipy *
- screed *
- seaborn *