https://github.com/GalacticDynamics/unxt
Unitful Quantities in JAX
array auto-differentiation dimensions high-performance jax quantities scientific-computing units
Last synced: 02 Oct 2026
https://github.com/mesa/mesa
Mesa is an open-source Python library for agent-based modeling, ideal for simulating complex systems and exploring emergent behaviors.
agent-based-modeling agent-based-simulation complex-systems complexity-analysis gis mesa modeling-agents simulation simulation-environment simulation-framework spatial-models
Last synced: 02 Oct 2026
https://github.com/BerkeleyLab/caffeine
A parallel runtime library for Fortran compilers
coarray coarray-fortran fortran-2018 fortran-2023 parallel-computing parallel-programming parallelism partitioned-global-address-space pgas runtime-library
Last synced: 02 Oct 2026
https://github.com/sxs-collaboration/gwsurrogate
An easy to use interface to gravitational wave surrogate models
gravitational-waveforms python surrogate-models
Last synced: 02 Oct 2026
https://github.com/Jashcraf/katsu
Polarimetric Data Reduction and machine control for measuring the polarization of observatories
Last synced: 02 Oct 2026
https://github.com/evanhockings/QuantumACES.jl
Design scalable noise characterisation experiments for quantum computers
julia quantum quantum-computing quantum-error-correction
Last synced: 02 Oct 2026
https://github.com/pyiron/executorlib
Up-scale python functions for high-performance computing (HPC)
concurrent-futures distributed-computing flux gpu hpc hpc-cluster mpi mpi4py multiprocessing parallel-computing pyiron python scientific-computing slurm task-scheduler
Last synced: 02 Oct 2026
https://github.com/usnistgov/imppy3d
Image processing in python for 3d image stacks
Last synced: 02 Oct 2026
https://github.com/madupite/madupite
a High-Performance Distributed Solver for Large-Scale Markov Decision Processes (MDP) relying on Inexact Policy Iteration; for Python and C++
cpp dynamic-programming ethz high-performance-computing markov-decision-processes mdp mdpsolver mpi nanobind optimal-control optimization petsc policy-iteration python python3 solver stochastic-optimal-control stochastic-optimization
Last synced: 02 Oct 2026
https://github.com/solids4foam/solids4foam
The official repository for solids4foam
finite-volume-method fluid-solid-interaction openfoam petsc solid-mechanics
Last synced: 02 Oct 2026
https://github.com/AncientNLP/potnia
Potnia is an open-source Python library designed to convert Romanized transliterations of ancient texts into Unicode representations of their respective native scripts.
Last synced: 02 Oct 2026
https://github.com/probml/dynamax
A Python package for probabilistic state space modeling with JAX
hidden-markov-models jax kalman-filter python state-space-models
Last synced: 02 Oct 2026
https://github.com/ISISNeutronMuon/quickBayes
A Python package for Bayesian analysis of data.
bayes python
Last synced: 02 Oct 2026
https://github.com/berenslab/fundus_image_toolbox
A Python package for fundus image processing.
Last synced: 02 Oct 2026
https://github.com/tvh0021/aweSOM
Accelerated Self-organizing Map (SOM) and Statistically Combined Ensemble (SCE)
Last synced: 02 Oct 2026
https://github.com/everval/LongMemory.jl
Julia package to generate, estimate, and forecast long memory processes
arfima cross-sectional-aggregation forecasting fractional-differencing har-model long-memory long-range-dependence stochastic-duration-shock strong-persistence time-series time-series-analysis
Last synced: 02 Oct 2026
https://github.com/silkemaes/MACE
MACE, a Machine-learning Approach to Chemistry Emulation
astrochemistry astrophysics autoencoder machine-learning simulation
Last synced: 02 Oct 2026
https://github.com/srigas/jaxkan
Kolmogorov–Arnold Networks built on JAX
flax jax kans kolmogorov-arnold-networks pikan
Last synced: 02 Oct 2026
https://github.com/munich-quantum-toolkit/core
MQT Core - Reusable C++20 and Python libraries for quantum computing: the MQT Compiler Collection, built on MLIR and LLVM, together with decision diagrams, QIR execution, QDMI device access, SDK and HPC integrations, and structured benchmarks. It forms the backbone of the Munich Quantum Toolkit.
cpp20 mlir mqsc mqt quantum-compilation quantum-intermediate-representation tum
Last synced: 02 Oct 2026
https://github.com/CastillonMiguel/phasefieldx
An Open-Source Framework for Advanced Phase-Field Simulations
fatigue fem finite-elements fracture fracture-mechanics phase-field phase-field-fracture solidification
Last synced: 02 Oct 2026
https://github.com/kinleyid/tempodisco/
An R package for temporal discounting
Last synced: 02 Oct 2026
https://github.com/sbi-dev/sbi
sbi is a Python package for simulation-based inference, designed to meet the needs of both researchers and practitioners. Whether you need fine-grained control or an easy-to-use interface, sbi has you covered.
bayesian-inference likelihood-free-inference machine-learning parameter-estimation pytorch simulation-based-inference
Last synced: 02 Oct 2026
https://github.com/wustat/rjaf
Regularized Joint Assignment Forest with Treatment Arm Clustering
causal-inference machine-learning
Last synced: 02 Oct 2026
https://github.com/daniloceano/CycloPhaser
This package calculates extratropical cyclone life cycle phases from vorticity data using Python.
Last synced: 02 Oct 2026
https://github.com/idaholab/MontePy
MontePy is the most user friendly Python library (API) to read, edit, and write MCNP input files.
api mcnp mcnp6 monte-carlo neutronics radiation-transport
Last synced: 02 Oct 2026
https://github.com/souradipp76/MM-PoE
Multiple Choice Reasoning via. Process of Elimination using Multi-Modal Models
inference llm multi-modal question-answering
Last synced: 02 Oct 2026
https://github.com/research-software-directory/RSD-as-a-service
This repo contains the new RSD-as-a-service implementation
Last synced: 02 Oct 2026
https://github.com/Bioconductor/bioconductor.org
Source code for the Bioconductor website
bioconductor website
Last synced: 02 Oct 2026
https://github.com/evanderkoogh/otel-cf-workers
An OpenTelemetry compatible library for instrumenting and exporting traces for Cloudflare Workers
cloudflare observability otel workers
Last synced: 02 Oct 2026
https://github.com/stan-dev/stan
Stan development repository. The master branch contains the current release. The develop branch contains the latest stable development. See the Developer Process Wiki for details.
bayesian bayesian-data-analysis bayesian-inference bayesian-methods bayesian-statistics stan
Last synced: 02 Oct 2026
https://github.com/gnu-octave/octave
GNU Octave Mirror (https://www.octave.org/hg/octave). Report bugs and submit pull requests (patches) at https://bugs.octave.org
Last synced: 02 Oct 2026
https://github.com/JuliaLang/julia
The Julia Programming Language
hacktoberfest hpc julia julia-language julialang machine-learning numerical programming-language science scientific
Last synced: 02 Oct 2026
https://github.com/rstudio/rstudio
RStudio is an integrated development environment (IDE) for R
Last synced: 02 Oct 2026
https://github.com/wch/r-source
Read-only mirror of R source code from https://svn.r-project.org/R/, updated hourly. See the build instructions on the wiki page.
Last synced: 02 Oct 2026
https://github.com/sid-the-sloth1/libraries
Set of custom made libs. Developed by keeping Tampermonkey in mind, but can be modified to use in normal web context also.
Last synced: 02 Oct 2026
https://github.com/Qiskit/qiskit
Qiskit is an open-source SDK for working with quantum computers at the level of extended quantum circuits, operators, and primitives.
c python qiskit quantum quantum-circuit quantum-computing quantum-programming-language rust sdk
Last synced: 02 Oct 2026
https://github.com/ESCOMP/CESM
The Community Earth System Model
climate climate-model ncar
Last synced: 02 Oct 2026
https://github.com/trinityrnaseq/trinityrnaseq
Trinity RNA-Seq de novo transcriptome assembly
Last synced: 02 Oct 2026
https://github.com/snakemake/snakemake
This is the development home of the workflow management system Snakemake. For general information, see
reproducibility snakemake workflow-management
Last synced: 02 Oct 2026
https://github.com/nextflow-io/nextflow
A DSL for data-driven computational pipelines
aws bioinformatics cloud dataflow docker groovy hello hpc nextflow pipeline pipeline-framework reproducible-research reproducible-science sge singularity singularity-containers slurm workflow-engine
Last synced: 02 Oct 2026
https://github.com/biolab/orange3
🍊 :bar_chart: :bulb: Orange: Interactive data analysis
classification clustering data-mining data-science data-visualization decision-trees machine-learning numpy orange orange3 pandas plotting python random-forest regression scikit-learn scipy visual-programming visualization
Last synced: 02 Oct 2026
https://github.com/knime/knime-core
KNIME Analytics Platform
database integration machine-learning open-source tool-blending workflow
Last synced: 02 Oct 2026
https://github.com/GenericMappingTools/gmt
The Generic Mapping Tools
c earth-science generic-mapping-tools geophysics geospatial mapping
Last synced: 02 Oct 2026
https://github.com/neuronsimulator/nrn
NEURON Simulator
high-performance-computing neuron neuroscience simulation
Last synced: 02 Oct 2026
https://github.com/afni/afni
Official AFNI source and documentation
anatomical-mri dwi fmri fmri-analysis fmri-data-analysis mri quality-control statistical-inference statistics visualization
Last synced: 02 Oct 2026
https://github.com/Slicer/Slicer
Multi-platform, free open source software for visualization and image computing.
3d-printing 3d-slicer c-plus-plus computed-tomography image-guided-therapy image-processing itk kitware medical-image-computing medical-imaging national-institutes-of-health neuroimaging nih python qt registration segmentation tcia-dac tractography vtk
Last synced: 02 Oct 2026
https://github.com/InsightSoftwareConsortium/ITK
Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.
cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing
Last synced: 02 Oct 2026
https://gitlab.kitware.com/paraview/paraview
Parallel Data Analysis and Visualization Application based on VTK.
paraview
Last synced: 03 Oct 2026
https://github.com/visit-dav/visit
VisIt - Visualization and Data Analysis for Mesh-based Scientific Data
data-analysis data-viz hpc python radiuss scientific-computing scientific-visualization visualization
Last synced: 02 Oct 2026
https://github.com/open-mpi/ompi
Open MPI main development repository
c fortran hacktoberfest hpc mpi openmpi
Last synced: 02 Oct 2026
https://github.com/lammps/lammps
Public development project of the LAMMPS MD software package
kokkos lammps molecular-dynamics simulation
Last synced: 02 Oct 2026
https://gitlab.com/gromacs/gromacs
The GROMACS molecular simulation toolkit.
molecular dynamics simulation
Last synced: 03 Oct 2026
https://github.com/imagej/ImageJ
Public domain software for processing and analyzing scientific images
computer-vision image-processing
Last synced: 02 Oct 2026
https://github.com/rachis-org/rachis
Rachis Framework (Formerly Known as QIIME 2 Framework (Q2F))
hacktoberfest
Last synced: 02 Oct 2026
https://github.com/BenLangmead/bowtie
An ultrafast memory-efficient short read aligner
bioinformatics c-plus-plus genomics read-aligners
Last synced: 02 Oct 2026
https://github.com/samtools/samtools
Tools (written in C using htslib) for manipulating next-generation sequencing data
Last synced: 02 Oct 2026
https://github.com/broadinstitute/gatk
Official code repository for GATK versions 4 and up
bioinformatics dna gatk genome genomics ngs science sequencing spark
Last synced: 02 Oct 2026
https://github.com/cytoscape/cytoscape
Cytoscape: an open source platform for network analysis and visualization
Last synced: 02 Oct 2026
https://github.com/cantaloupe-project/cantaloupe
High-performance dynamic image server in Java
iiif image-server jpeg2000 thumbnails zoomable-images
Last synced: 02 Oct 2026
https://github.com/libexif/libexif/
A library for parsing, editing, and saving EXIF data
exif jpeg metadata photos
Last synced: 02 Oct 2026
https://github.com/guidewire-oss/fern-reporter
A ginkgo test reporter extension for storing test run information and also for reporting html pages
bdd fern ginkgo ginkgo-reporter golang hacktoberfest html-reporter reporter test-visualization testing testing-reporter testing-tool testing-tools
Last synced: 02 Oct 2026
https://github.com/leanprover/lean4
Lean 4 programming language and theorem prover
lean lean4
Last synced: 02 Oct 2026
https://github.com/denoland/deno/
A modern runtime for JavaScript and TypeScript.
deno javascript rust typescript
Last synced: 02 Oct 2026
https://github.com/apache/arrow-go
Official Go implementation of Apache Arrow
apache-arrow go
Last synced: 02 Oct 2026
https://github.com/mysql/mysql-server
MySQL Server, the world's most popular open source database, and MySQL Cluster, a real-time, open source transactional database.
Last synced: 02 Oct 2026
https://github.com/MariaDB/server
MariaDB server is a community developed fork of MySQL server. Started by core members of the original MySQL team, MariaDB actively works with outside developers to deliver the most featureful, stable, and sanely licensed open SQL server in the industry.
amazon-web-services database fulltext-search galera geographical-information-system innodb json mariadb mysql nearest-neighbor-search rdbms relational-databases sql storage-engine vector-database
Last synced: 02 Oct 2026
https://github.com/mariadb/server
MariaDB server is a community developed fork of MySQL server. Started by core members of the original MySQL team, MariaDB actively works with outside developers to deliver the most featureful, stable, and sanely licensed open SQL server in the industry.
amazon-web-services database fulltext-search galera geographical-information-system innodb json mariadb mysql nearest-neighbor-search rdbms relational-databases sql storage-engine vector-database
Last synced: 02 Oct 2026
https://github.com/mariadb/server
MariaDB server is a community developed fork of MySQL server. Started by core members of the original MySQL team, MariaDB actively works with outside developers to deliver the most featureful, stable, and sanely licensed open SQL server in the industry.
amazon-web-services database fulltext-search galera geographical-information-system innodb json mariadb mysql nearest-neighbor-search rdbms relational-databases sql storage-engine vector-database
Last synced: 02 Oct 2026
https://github.com/Apache/arrow
Apache Arrow is the universal columnar format and multi-language toolbox for fast data interchange and in-memory analytics
arrow parquet
Last synced: 02 Oct 2026
https://GitHub.com/Apache/arrow
Apache Arrow is the universal columnar format and multi-language toolbox for fast data interchange and in-memory analytics
arrow parquet
Last synced: 02 Oct 2026
https://gitlab.gnome.org/vandenoever/xust
[Xust](https://vandenoever.pages.gitlab.gnome.org/xust/) is a set of XML crates under development since 2020. It aims for compliance with the W3 test suites for XML/DTD, XML Schema 1.1, and XQuery 3.1.
Last synced: 02 Oct 2026
https://github.com/ente/ente
đź’š End-to-end encrypted cloud for everything.
2fa android authy e2ee encryption end-to-end-encryption flutter golang google-photos google-photos-alternative ios opensource photos privacy privacy-tools typescript zero-knowledge
Last synced: 02 Oct 2026
https://github.com/rust-lang/rust
Empowering everyone to build reliable and efficient software.
compiler language rust
Last synced: 02 Oct 2026
https://github.com/hexatomic/hexatomic
Hexatomic is an extensible software for deep multi-layer annotation of linguistic corpora
annotation-tool corpus-linguistics
Last synced: 02 Oct 2026
https://github.com/kahaaga/UncertainData.jl
Working efficiently with datasets where observations have associated uncertainties.
Last synced: 02 Oct 2026
https://github.com/vincentarelbundock/countrycode
R package: Convert country names and country codes. Assigns region descriptors.
Last synced: 02 Oct 2026
https://github.com/mwaskom/seaborn
Statistical data visualization in Python
data-science data-visualization matplotlib pandas python
Last synced: 02 Oct 2026
https://github.com/PyWavelets/pywt
PyWavelets - Wavelet Transforms in Python
continuous-wavelet image-processing signal-processing wavelet-transform wavelets
Last synced: 02 Oct 2026
https://github.com/ropensci/piggyback
:package: for using large(r) data files on GitHub
data-store git-lfs peer-reviewed r r-package rstats
Last synced: 02 Oct 2026
https://github.com/mpetroff/pannellum
Pannellum is a lightweight, free, and open source panorama viewer for the web.
javascript library panorama webgl
Last synced: 02 Oct 2026
https://github.com/nextstrain/nextclade
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
clade clades coronavirus covid covid-19 covid19 dna influenza ncov neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain virus
Last synced: 02 Oct 2026
https://github.com/range-et/PGL
The Plebeian Graph Library: A WebGL based network visusalisation and diagnostics package
data-visualization graph graph-theory visualization webgl
Last synced: 02 Oct 2026
https://github.com/IbrahimTanyalcin/lexicon-mono-seq
DOM Text Based Multiple Sequence Alignment Library
alignment animation-library ascii ascii-art async-programming bioinformatics biology data-visualization good-first-issue help-wanted javascript javascript-library msa msa-viewer sequence-alignment vanilla-javascript
Last synced: 02 Oct 2026
https://github.com/flekschas/regl-scatterplot
Scalable WebGL-based scatter plot library build with Regl
2d regl scatter-plot scatterplot visualization webgl
Last synced: 02 Oct 2026
https://github.com/tak-bro/aicommit2
A Reactive CLI that generates commit messages for Git and Jujutsu with Ollama, ChatGPT, Gemini, Claude, Mistral and other AI
ai-commits aicommit aicommits anthropic chatgpt claude cli codestral cohere deepseek git-commit groq jj lazygit llama mistral ollama perplexity pre-commit pre-commit-hook
Last synced: 02 Oct 2026
https://github.com/tak-bro/varai
AI-powered tool that recommends variable names with Ollama, ChatGPT, Gemini, Claude, Mistral and others
ai anthro chatgpt claude claude-3 claude-ai cli clovax command-line gemini gemini-pro huggingface llama3 llm mistral-ai ollama openai recommendation variable variables
Last synced: 02 Oct 2026
https://github.com/dropbox/hqq
Official implementation of Half-Quadratic Quantization (HQQ)
llm machine-learning quantization
Last synced: 02 Oct 2026
https://github.com/brucemacd/chatd
Chat with your documents using local AI
chat desktop electron llama2 llm mistral mistral-7b ollama rag
Last synced: 02 Oct 2026
https://github.com/internlm/xtuner
A Next-Generation Training Engine Built for Ultra-Large MoE Models
agent deepseek-v3 gpt-oss intern-s1 internvl kimi-k2 llm multimodal qwen3-moe qwen3-vl reinforcement-learning
Last synced: 02 Oct 2026
