https://github.com/snakemake/snakemake

reproducibility snakemake workflow-management

Score: 29.239681427320306

Last synced: about 22 hours ago
JSON representation

Repository metadata:

This is the development home of the workflow management system Snakemake. For general information, see

Host: GitHub
URL: https://github.com/snakemake/snakemake
Owner: snakemake
License: mit
Created: 2019-10-04T14:58:11.000Z (almost 7 years ago)
Default Branch: main
Last Pushed: 2026-08-18T11:56:42.000Z (4 days ago)
Last Synced: 2026-08-19T09:34:35.853Z (3 days ago)
Topics: reproducibility, snakemake, workflow-management
Language: Python
Homepage: https://snakemake.github.io
Size: 94 MB
Stars: 2,849
Watchers: 16
Forks: 655
Open Issues: 1,092
Metadata Files:
- Readme: README.md
- Changelog: CHANGELOG.md
- Funding: .github/FUNDING.yml
- License: LICENSE.md
- Code of conduct: CODE_OF_CONDUCT.md
- Codeowners: .github/CODEOWNERS
Funding:
- Github: snakemake

Owner metadata:

Name: Snakemake
Login: snakemake
Email:
Kind: organization
Description:
Website: https://snakemake.github.io
Location:
Twitter: johanneskoester
Company:
Icon url: https://avatars.githubusercontent.com/u/33450111?v=4
Repositories: 12
Last Synced at: 2023-03-04T23:09:25.175Z
Profile URL: https://github.com/snakemake

GitHub Events

Total

Commit comment event: 3
Create event: 214
Delete event: 224
Fork event: 75
Issue comment event: 2497
Issues event: 492
Pull request event: 643
Pull request review comment event: 649
Pull request review event: 1142
Push event: 1078
Release event: 21
Watch event: 342
Total: 7380

Last Year

Commit comment event: 1
Create event: 58
Delete event: 68
Fork event: 9
Issue comment event: 349
Issues event: 177
Pull request event: 126
Pull request review comment event: 177
Pull request review event: 231
Push event: 374
Release event: 3
Watch event: 71
Total: 1644

Committers metadata

Last synced: 3 days ago

Total Commits: 5,452
Total Committers: 405
Avg Commits per committer: 13.462
Development Distribution Score (DDS): 0.423

Commits in past year: 308
Committers in past year: 63
Avg Commits per committer in past year: 4.889
Development Distribution Score (DDS) in past year: 0.724

Name	Email	Commits
Johannes Köster	j**r@t**e	3148
johannes.koester@gmail.com	j**r@gm@9**5	398
github-actions[bot]	4****]	206
snakemake-bot	s**n@g**m	88
Christopher Tomkins-Tinch	t**c@b**g	76
Per Unneberg	p**g@s**e	60
Rasmus Ågren	r**n@s**e	52
Filipe G. Vieira	1****a	47
Tim Booth	t**h@e**k	44
dependabot[bot]	4****]	41
Oliver Stolpe	o**e@b**e	41
Vanessasaurus	v**t@s**u	37
David Laehnemann	d**n@h**e	31
johannes.koester@googlemail.com	j**r@gm@9**5	30
Henning Timm	h**m@t**e	27
Hocnonsense	4****e	27
Christopher Burr	c**r@c**h	25
David Koppstein	d**n@a**m	24
Cade Mirchandani	c**n@u**u	23
Manuel Holtgrewe	m**e@b**e	23
Michael Hall	m**l@m**h	19
Marcel Martin	m**n@s**e	18
Felix Mölder	f**r@u**e	17
Ben Beasley	c**e@m**t	17
Ryan C. Thompson	r**t@t**g	16
Morten Enemark Lund	m**d@g**m	15
Peter Van Dyken	8****n	14
bow	b**w@b**d	13
Simon Ye	s**7@g**m	13
Manuel Holtgrewe	z**i@g**m	12
and 375 more...

Issue and Pull Request metadata

Last synced: 2 days ago

Total issues: 900
Total pull requests: 1,433
Average time to close issues: 10 months
Average time to close pull requests: about 1 month
Total issue authors: 524
Total pull request authors: 211
Average comments per issue: 2.65
Average comments per pull request: 2.3
Merged pull request: 986
Bot issues: 3
Bot pull requests: 228

Past year issues: 93
Past year pull requests: 163
Past year average time to close issues: about 2 months
Past year average time to close pull requests: 25 days
Past year issue authors: 78
Past year pull request authors: 47
Past year average comments per issue: 1.98
Past year average comments per pull request: 1.94
Past year merged pull request: 97
Past year bot issues: 0
Past year bot pull requests: 15

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/snakemake/snakemake

Top Issue Authors

johanneskoester (20)
pdimens (16)
fgvieira (16)
corneliusroemer (16)
lczech (12)
irm-codebase (10)
cademirch (9)
cmeesters (8)
peterjc (8)
vsoch (8)
Hocnonsense (8)
Redmar-van-den-Berg (8)
hermidalc (7)
dlaehnemann (7)
MuhammadRohanA (6)

Top Pull Request Authors

johanneskoester (392)
github-actions[bot] (183)
snakemake-bot (74)
fgvieira (69)
Hocnonsense (47)
dependabot[bot] (43)
cademirch (38)
musicinmybrain (28)
cmeesters (27)
jjjermiah (22)
dlaehnemann (17)
jakevc (16)
laf070810 (15)
fxwiegand (14)
vsoch (10)

Top Issue Labels

bug (525)
enhancement (266)
stale (94)
documentation (6)
hackathon-2025 (6)
help wanted (3)
question (3)
autorelease: pending (1)
awaiting-test-with-latest-release (1)
invalid (1)
wontfix (1)
good first issue (1)
needs example (1)

Top Pull Request Labels

autorelease: tagged (137)
autorelease: pending (120)
dependencies (43)
github_actions (27)
bug (17)
enhancement (12)
documentation (11)
stale (10)
hackathon-2025 (9)
WIP (6)
update-container-image (2)
help wanted (1)

Package metadata

Total packages: 2
Total downloads:
- pypi: 249,980 last-month
Total docker downloads: 2,879,480
Total dependent packages: 81 (may contain duplicates)
Total dependent repositories: 547 (may contain duplicates)
Total versions: 903
Total maintainers: 1

pypi.org: snakemake

Workflow management system to create reproducible and scalable data analyses

Homepage: https://snakemake.github.io
Documentation: https://snakemake.readthedocs.io
Licenses: MIT
Latest release: 9.25.2 (published 4 days ago)
Last Synced: 2026-08-20T10:03:37.674Z (2 days ago)
Versions: 467
Dependent Packages: 81
Dependent Repositories: 547
Downloads: 249,980 Last month
Docker Downloads: 2,879,480
Rankings:
- Dependent packages count: 0.277%
- Dependent repos count: 0.615%
- Docker downloads count: 0.76%
- Downloads: 0.977%
- Average: 1.112%
- Stargazers count: 1.584%
- Forks count: 2.461%
Maintainers (1)
- johanneskoester

proxy.golang.org: github.com/snakemake/snakemake

Homepage:
Documentation: https://pkg.go.dev/github.com/snakemake/snakemake#section-documentation
Licenses: mit
Latest release: v9.25.1+incompatible (published 16 days ago)
Last Synced: 2026-08-19T10:57:44.530Z (3 days ago)
Versions: 436
Dependent Packages: 0
Dependent Repositories: 0
Rankings:
- Dependent packages count: 4.881%
- Average: 5.045%
- Dependent repos count: 5.209%

Dependencies

.github/workflows/announce-release.yml actions

actions/checkout v6 composite
snakemake/mastodon-release-post-action v1 composite

.github/workflows/docs.yml actions

actions/checkout v6 composite
actions/upload-artifact v5 composite
prefix-dev/setup-pixi v0.9.3 composite

apidocs/requirements.txt pypi

appdirs *
configargparse *
docutils *
myst-parser *
snakemake-interface-common *
snakemake-interface-executor-plugins *
snakemake-interface-logger-plugins *
snakemake-interface-storage-plugins *
sphinx ==8.1
sphinx-argparse *
sphinx-autodoc-typehints *
sphinxawesome-theme *
sphinxcontrib-napoleon *

.github/workflows/codespell.yml actions

actions/checkout v6 composite
codespell-project/actions-codespell v2 composite

.github/workflows/stale.yml actions

actions/stale v10 composite

.github/workflows/conventional-prs.yml actions

amannn/action-semantic-pull-request v5.0.2 composite

.github/workflows/docker-publish.yml actions

actions/checkout v4 composite
docker/setup-buildx-action v2 composite
elgohr/Publish-Docker-Github-Action v5 composite

.github/workflows/main.yml actions

actions/checkout v4 composite
actions/checkout v3 composite
mamba-org/setup-micromamba v1 composite
marocchino/sticky-pull-request-comment v2.8.0 composite
vegardit/fast-apt-mirror.sh 1.0.0 composite

.github/workflows/release-please.yml actions

GoogleCloudPlatform/release-please-action v3 composite
actions/checkout v3 composite
actions/setup-python v4 composite
elgohr/Publish-Docker-Github-Action v5 composite
pypa/gh-action-pypi-publish release/v1 composite

Dockerfile docker

mambaorg/micromamba latest build

examples/flux/Dockerfile docker

fluxrm/flux-sched focal build

tests/test_containerized/Dockerfile docker

condaforge/mambaforge latest build

tests/test_remote_irods/Dockerfile docker

"mjstealey/irods-provider-postgres 4.2.2" build

docs/requirements.txt pypi

appdirs *
configargparse *
docutils *
myst-parser *
snakemake-interface-common *
snakemake-interface-executor-plugins *
snakemake-interface-storage-plugins *
sphinx >=3
sphinx-argparse *
sphinxcontrib-napoleon *

pyproject.toml pypi

setup.py pypi

tests/test_prebuilt_conda_script/dummy_package/pyproject.toml pypi

tests/test_get_log_both/environment.yaml conda

tests/test_get_log_complex/environment.yaml conda

tests/test_get_log_none/environment.yaml conda

tests/test_get_log_stderr/environment.yaml conda

tests/test_get_log_stdout/environment.yaml conda

tests/test_issue1046/my_wrapper/environment.yaml conda

tests/test_r_wrapper/environment.yaml conda

tests/test_subworkflow_config/environment.yml conda

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