https://github.com/snakemake/snakemake

reproducibility snakemake workflow-management

Score: 29.198047079697425

Last synced: about 6 hours ago
JSON representation

Repository metadata:

This is the development home of the workflow management system Snakemake. For general information, see

Host: GitHub
URL: https://github.com/snakemake/snakemake
Owner: snakemake
License: mit
Created: 2019-10-04T14:58:11.000Z (over 6 years ago)
Default Branch: main
Last Pushed: 2026-05-29T07:55:26.000Z (22 days ago)
Last Synced: 2026-05-29T09:26:30.870Z (22 days ago)
Topics: reproducibility, snakemake, workflow-management
Language: Python
Homepage: https://snakemake.github.io
Size: 91.1 MB
Stars: 2,792
Watchers: 17
Forks: 648
Open Issues: 1,116
Metadata Files:
- Readme: README.md
- Changelog: CHANGELOG.md
- License: LICENSE.md
- Code of conduct: CODE_OF_CONDUCT.md
- Codeowners: .github/CODEOWNERS

Owner metadata:

Name: Snakemake
Login: snakemake
Email:
Kind: organization
Description:
Website: https://snakemake.github.io
Location:
Twitter: johanneskoester
Company:
Icon url: https://avatars.githubusercontent.com/u/33450111?v=4
Repositories: 12
Last Synced at: 2023-03-04T23:09:25.175Z
Profile URL: https://github.com/snakemake

GitHub Events

Total

Commit comment event: 2
Create event: 164
Delete event: 175
Fork event: 70
Issue comment event: 2273
Issues event: 342
Pull request event: 564
Pull request review comment event: 535
Pull request review event: 1000
Push event: 773
Release event: 18
Watch event: 285
Total: 6201

Last Year

Commit comment event: 2
Create event: 164
Delete event: 175
Fork event: 70
Issue comment event: 2273
Issues event: 342
Pull request event: 564
Pull request review comment event: 535
Pull request review event: 1000
Push event: 773
Release event: 18
Watch event: 285
Total: 6201

Committers metadata

Last synced: 26 days ago

Total Commits: 5,387
Total Committers: 395
Avg Commits per committer: 13.638
Development Distribution Score (DDS): 0.418

Commits in past year: 294
Committers in past year: 62
Avg Commits per committer in past year: 4.742
Development Distribution Score (DDS) in past year: 0.704

Name	Email	Commits
Johannes Köster	j**r@t**e	3133
johannes.koester@gmail.com	j**r@gm@9**5	398
github-actions[bot]	4****]	206
snakemake-bot	s**n@g**m	80
Christopher Tomkins-Tinch	t**c@b**g	76
Per Unneberg	p**g@s**e	60
Rasmus Ågren	r**n@s**e	52
Tim Booth	t**h@e**k	44
Filipe G. Vieira	1****a	42
Oliver Stolpe	o**e@b**e	41
Vanessasaurus	v**t@s**u	37
dependabot[bot]	4****]	35
johannes.koester@googlemail.com	j**r@gm@9**5	30
David Laehnemann	d**n@h**e	29
Henning Timm	h**m@t**e	27
Hocnonsense	4****e	26
Christopher Burr	c**r@c**h	25
David Koppstein	d**n@a**m	24
Manuel Holtgrewe	m**e@b**e	23
Cade Mirchandani	c**n@u**u	22
Michael Hall	m**l@m**h	19
Marcel Martin	m**n@s**e	18
Felix Mölder	f**r@u**e	17
Ryan C. Thompson	r**t@t**g	16
Ben Beasley	c**e@m**t	15
Morten Enemark Lund	m**d@g**m	15
Peter Van Dyken	8****n	14
bow	b**w@b**d	13
Simon Ye	s**7@g**m	13
Manuel Holtgrewe	z**i@g**m	12
and 365 more...

Issue and Pull Request metadata

Last synced: 8 months ago

Total issues: 822
Total pull requests: 1,339
Average time to close issues: 8 months
Average time to close pull requests: about 1 month
Total issue authors: 484
Total pull request authors: 190
Average comments per issue: 2.59
Average comments per pull request: 2.27
Merged pull request: 926
Bot issues: 3
Bot pull requests: 218

Past year issues: 224
Past year pull requests: 555
Past year average time to close issues: about 1 month
Past year average time to close pull requests: 7 days
Past year issue authors: 150
Past year pull request authors: 84
Past year average comments per issue: 1.5
Past year average comments per pull request: 1.83
Past year merged pull request: 370
Past year bot issues: 0
Past year bot pull requests: 43

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/snakemake/snakemake

Top Issue Authors

johanneskoester (18)
corneliusroemer (16)
fgvieira (16)
pdimens (14)
lczech (12)
irm-codebase (9)
cademirch (9)
vsoch (8)
Redmar-van-den-Berg (8)
peterjc (8)
cmeesters (7)
hermidalc (7)
MuhammadRohanA (6)
dlaehnemann (6)
gipert (5)

Top Pull Request Authors

johanneskoester (381)
github-actions[bot] (183)
snakemake-bot (65)
fgvieira (60)
Hocnonsense (42)
cademirch (37)
dependabot[bot] (33)
musicinmybrain (26)
cmeesters (25)
jjjermiah (22)
jakevc (16)
laf070810 (15)
fxwiegand (14)
dlaehnemann (14)
vsoch (10)

Top Issue Labels

bug (474)
enhancement (249)
stale (59)
hackathon-2025 (6)
documentation (4)
help wanted (3)
question (3)
needs example (1)
good first issue (1)
autorelease: pending (1)
awaiting-test-with-latest-release (1)
wontfix (1)
invalid (1)

Top Pull Request Labels

autorelease: tagged (128)
autorelease: pending (120)
dependencies (33)
github_actions (17)
bug (12)
documentation (11)
stale (9)
hackathon-2025 (9)
enhancement (7)
WIP (4)
update-container-image (2)
help wanted (1)

Package metadata

Total packages: 2
Total downloads:
- pypi: 224,342 last-month
Total docker downloads: 2,879,480
Total dependent packages: 81 (may contain duplicates)
Total dependent repositories: 547 (may contain duplicates)
Total versions: 593
Total maintainers: 1

pypi.org: snakemake

Workflow management system to create reproducible and scalable data analyses

Homepage: https://snakemake.github.io
Documentation: https://snakemake.readthedocs.io
Licenses: mit
Latest release: 9.14.5 (published 6 months ago)
Last Synced: 2026-04-01T10:07:39.632Z (3 months ago)
Versions: 443
Dependent Packages: 81
Dependent Repositories: 547
Downloads: 224,342 Last month
Docker Downloads: 2,879,480
Rankings:
- Dependent packages count: 0.277%
- Dependent repos count: 0.615%
- Docker downloads count: 0.76%
- Downloads: 0.977%
- Average: 1.112%
- Stargazers count: 1.584%
- Forks count: 2.461%
Maintainers (1)
- johanneskoester

proxy.golang.org: github.com/snakemake/snakemake

Homepage:
Documentation: https://pkg.go.dev/github.com/snakemake/snakemake#section-documentation
Licenses:
Latest release: v9.20.0+incompatible (published about 1 month ago)
Last Synced: 2026-05-07T20:45:39.294Z (about 1 month ago)
Versions: 150
Dependent Packages: 0
Dependent Repositories: 0
Rankings:
- Dependent packages count: 4.881%
- Average: 5.045%
- Dependent repos count: 5.209%

Dependencies

.github/workflows/announce-release.yml actions

actions/checkout v6 composite
snakemake/mastodon-release-post-action v1 composite

.github/workflows/docs.yml actions

actions/checkout v6 composite
actions/upload-artifact v5 composite
prefix-dev/setup-pixi v0.9.3 composite

rust/Cargo.toml cargo

apidocs/requirements.txt pypi

appdirs *
configargparse *
docutils *
myst-parser *
snakemake-interface-common *
snakemake-interface-executor-plugins *
snakemake-interface-logger-plugins *
snakemake-interface-storage-plugins *
sphinx ==8.1
sphinx-argparse *
sphinx-autodoc-typehints *
sphinxawesome-theme *
sphinxcontrib-napoleon *

rust/Cargo.lock cargo

autocfg 1.5.0
heck 0.5.0
indoc 2.0.7
libc 0.2.180
memoffset 0.9.1
once_cell 1.21.3
portable-atomic 1.13.1
proc-macro2 1.0.106
pyo3 0.27.2
pyo3-build-config 0.27.2
pyo3-ffi 0.27.2
pyo3-macros 0.27.2
pyo3-macros-backend 0.27.2
quote 1.0.44
rustversion 1.0.22
syn 2.0.114
target-lexicon 0.13.4
unicode-ident 1.0.22
unindent 0.2.4

.github/workflows/codespell.yml actions

actions/checkout v6 composite
codespell-project/actions-codespell v2 composite

.github/workflows/stale.yml actions

actions/stale v10 composite

.github/workflows/conventional-prs.yml actions

amannn/action-semantic-pull-request v5.0.2 composite

.github/workflows/docker-publish.yml actions

actions/checkout v4 composite
docker/setup-buildx-action v2 composite
elgohr/Publish-Docker-Github-Action v5 composite

.github/workflows/main.yml actions

actions/checkout v4 composite
actions/checkout v3 composite
mamba-org/setup-micromamba v1 composite
marocchino/sticky-pull-request-comment v2.8.0 composite
vegardit/fast-apt-mirror.sh 1.0.0 composite

.github/workflows/release-please.yml actions

GoogleCloudPlatform/release-please-action v3 composite
actions/checkout v3 composite
actions/setup-python v4 composite
elgohr/Publish-Docker-Github-Action v5 composite
pypa/gh-action-pypi-publish release/v1 composite

Dockerfile docker

mambaorg/micromamba latest build

examples/flux/Dockerfile docker

fluxrm/flux-sched focal build

tests/test_containerized/Dockerfile docker

condaforge/mambaforge latest build

tests/test_remote_irods/Dockerfile docker

"mjstealey/irods-provider-postgres 4.2.2" build

docs/requirements.txt pypi

appdirs *
configargparse *
docutils *
myst-parser *
snakemake-interface-common *
snakemake-interface-executor-plugins *
snakemake-interface-storage-plugins *
sphinx >=3
sphinx-argparse *
sphinxcontrib-napoleon *

pyproject.toml pypi

setup.py pypi

tests/test_prebuilt_conda_script/dummy_package/pyproject.toml pypi

tests/test_get_log_both/environment.yaml conda

tests/test_get_log_complex/environment.yaml conda

tests/test_get_log_none/environment.yaml conda

tests/test_get_log_stderr/environment.yaml conda

tests/test_get_log_stdout/environment.yaml conda

tests/test_issue1046/my_wrapper/environment.yaml conda

tests/test_r_wrapper/environment.yaml conda

tests/test_subworkflow_config/environment.yml conda

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