JOSS: https://github.com/nextstrain/nextclade
clade clades coronavirus covid covid-19 covid19 dna influenza ncov neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain virus
Score: 14.010004397688785
Last synced: about 9 hours ago
JSON representation
Repository metadata:
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
- Host: GitHub
- URL: https://github.com/nextstrain/nextclade
- Owner: nextstrain
- License: mit
- Created: 2020-06-12T13:01:14.000Z (about 6 years ago)
- Default Branch: master
- Last Pushed: 2026-03-17T15:14:02.000Z (3 months ago)
- Last Synced: 2026-03-27T14:53:49.271Z (3 months ago)
- Topics: clade, clades, coronavirus, covid, covid-19, covid19, dna, influenza, ncov, neherlab, next-generation-sequencing, nextstrain, research, rna, sars-cov-2, science, sequences, sequencing, strain, virus
- Language: TypeScript
- Homepage: https://clades.nextstrain.org
- Size: 64.4 MB
- Stars: 252
- Watchers: 15
- Forks: 66
- Open Issues: 146
-
Metadata Files:
- Readme: README.md
- Changelog: CHANGELOG.md
- Contributing: CONTRIBUTING.md
- License: LICENSE
Owner metadata:
- Name: Nextstrain
- Login: nextstrain
- Email:
- Kind: organization
- Description: Real-time tracking of pathogen evolution
- Website: https://nextstrain.org
- Location:
- Twitter: nextstrain
- Company:
- Icon url: https://avatars.githubusercontent.com/u/22159334?v=4
- Repositories: 84
- Last Synced at: 2024-04-11T18:11:56.173Z
- Profile URL: https://github.com/nextstrain
GitHub Events
Total
- Create event: 88
- Delete event: 29
- Fork event: 3
- Issue comment event: 146
- Issues event: 52
- Pull request event: 67
- Pull request review comment event: 8
- Pull request review event: 17
- Push event: 91
- Release event: 16
- Watch event: 23
- Total: 540
Last Year
- Create event: 59
- Delete event: 23
- Fork event: 1
- Issue comment event: 82
- Issues event: 32
- Pull request event: 45
- Pull request review comment event: 7
- Pull request review event: 15
- Push event: 76
- Release event: 10
- Watch event: 9
- Total: 359
Committers metadata
Last synced: 3 months ago
Total Commits: 5,624
Total Committers: 28
Avg Commits per committer: 200.857
Development Distribution Score (DDS): 0.158
Commits in past year: 428
Committers in past year: 4
Avg Commits per committer in past year: 107.0
Development Distribution Score (DDS) in past year: 0.068
| Name | Commits | |
|---|---|---|
| ivan-aksamentov | i****v@g****m | 4738 |
| Richard Neher | r****r@u****h | 431 |
| Cornelius Roemer | c****r@g****m | 314 |
| dependabot[bot] | 4****] | 31 |
| mt-gitlocalize | m****t@g****m | 28 |
| anna-parker | a****r@g****m | 25 |
| Victor Lin | 1****n | 16 |
| Thomas Sibley | t****y@f****g | 10 |
| nextstrain-bot | n****t | 4 |
| John SJ Anderson | j****4@f****g | 3 |
| dnanto | d****2@g****u | 3 |
| snyk-bot | s****t@s****o | 3 |
| Natalie Stroud | s****1@n****u | 2 |
| Emma Hodcroft | e****t@g****m | 2 |
| Actat | a****h@g****m | 1 |
| Alex Rubinsteyn | a****n@g****m | 1 |
| Björn Grüning | b****n@g****u | 1 |
| Bryan Tegomoh | 6****h | 1 |
| Chaoran Chen | m****l@c****e | 1 |
| Christopher Bottoms | m****s | 1 |
| Finlay Maguire | f****e@g****m | 1 |
| Gordon Julian Koehn | k****g@e****h | 1 |
| John Huddleston | h****j@g****m | 1 |
| Jover Lee | j****1@g****m | 1 |
| Theo Sanderson | t****o@t****o | 1 |
| j23414 | j****g@i****u | 1 |
| Jason | J****n@m****c | 1 |
| eharkins | e****s@g****m | 1 |
Issue and Pull Request metadata
Last synced: 3 months ago
Total issues: 184
Total pull requests: 518
Average time to close issues: 12 months
Average time to close pull requests: 26 days
Total issue authors: 63
Total pull request authors: 13
Average comments per issue: 2.14
Average comments per pull request: 1.49
Merged pull request: 371
Bot issues: 0
Bot pull requests: 55
Past year issues: 35
Past year pull requests: 73
Past year average time to close issues: 2 days
Past year average time to close pull requests: 3 days
Past year issue authors: 23
Past year pull request authors: 5
Past year average comments per issue: 0.97
Past year average comments per pull request: 1.21
Past year merged pull request: 50
Past year bot issues: 0
Past year bot pull requests: 7
Top Issue Authors
- corneliusroemer (53)
- ivan-aksamentov (22)
- ryhisner (7)
- ammaraziz (6)
- theosanderson (6)
- liamxg (6)
- AngieHinrichs (5)
- joverlee521 (5)
- FedeGueli (4)
- anna-parker (3)
- jameshadfield (3)
- fanninpm (3)
- rneher (3)
- victorlin (3)
- genehack (3)
Top Pull Request Authors
- ivan-aksamentov (346)
- corneliusroemer (57)
- dependabot[bot] (55)
- rneher (30)
- tsibley (11)
- victorlin (7)
- genehack (3)
- anna-parker (3)
- gordonkoehn (2)
- joverlee521 (1)
- BryanTegomoh (1)
- nodrogluap (1)
- huddlej (1)
Top Issue Labels
- t:bug (67)
- t:feat (67)
- help wanted (64)
- good first issue (61)
- needs triage (56)
- t:ask (33)
- package: nextclade_web (27)
- t:talk (8)
- package: nextclade_cli (6)
- prio: low (5)
- package: nextclade (5)
- docs (4)
- s:nextclade_web (2)
- package: nextalign (2)
- package: nextalign_cli (2)
- prio:medium (2)
- v2 (2)
- nextclade_data (2)
- v3 (1)
- os: macOS (1)
- wontfix (1)
- source: office hours (1)
Top Pull Request Labels
- dependencies (54)
- javascript (38)
- github_actions (6)
- t:bug (1)
- docs (1)
Package metadata
- Total packages: 2
-
Total downloads:
- npm: 100 last-month
- Total dependent packages: 2 (may contain duplicates)
- Total dependent repositories: 1 (may contain duplicates)
- Total versions: 58
- Total maintainers: 6
npmjs.org: @neherlab/nextclade
Nextclade version 0.x is deprecated. It means that we no longer recommend to use it. Please upgrade to the most recent version, containing latest bug fixes and new features. Make sure you remove the old version to avoid conflicts. The latest information a
- Homepage: https://clades.nextstrain.org
- Status: deprecated
- Licenses: MIT
- Latest release: 0.16.1 (published about 4 years ago)
- Last Synced: 2026-03-29T05:01:59.614Z (3 months ago)
- Versions: 50
- Dependent Packages: 1
- Dependent Repositories: 1
- Downloads: 87 Last month
-
Rankings:
- Forks count: 3.842%
- Stargazers count: 4.251%
- Dependent repos count: 10.768%
- Average: 12.527%
- Dependent packages count: 21.31%
- Downloads: 22.464%
- Maintainers (2)
npmjs.org: @nextstrain/nextclade
Nextclade version 0.x is deprecated. It means that we no longer recommend to use it. Please upgrade to the most recent version, containing latest bug fixes and new features. Make sure you remove the old version to avoid conflicts. The latest information a
- Homepage: https://clades.nextstrain.org
- Status: deprecated
- Licenses: MIT
- Latest release: 0.16.0 (published about 4 years ago)
- Last Synced: 2026-03-29T05:02:01.000Z (3 months ago)
- Versions: 8
- Dependent Packages: 1
- Dependent Repositories: 0
- Downloads: 13 Last month
-
Rankings:
- Forks count: 4.557%
- Stargazers count: 5.173%
- Dependent packages count: 16.224%
- Average: 16.58%
- Dependent repos count: 25.328%
- Downloads: 31.618%
- Maintainers (6)
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