Ecosyste.ms: Summary

https://github.com/GRTLCollaboration/GRFolres

Extension to GRChombo for Modified Gravity simulations

Last synced: 22 Aug 2026

https://github.com/Simulation-Decomposition/simdec-python

Sensitivity analysis using simulation decomposition

computational-modeling sensitivity-analysis uncertainty visualization

Last synced: 22 Aug 2026

https://github.com/groupmm/libsoni

A Python Toolbox for Sonifying Music Annotations and Feature Representations

audio mir sonification

Last synced: 22 Aug 2026

https://github.com/mei-friend/mei-friend

The mei-friend Web Application: Editing MEI in the Browser

digital-humanities edition editor mei mei-friend music-encoding music-notation verovio

Last synced: 22 Aug 2026

https://github.com/edsonportosilva/OptiCommPy/

Simulate optical communications systems with Python.

adaptive-equalization bit-error-rate cupy digital-modulation digital-signal-processing eye-diagrams fiber-optic-communications jupyter-notebook ldpc modulation-techniques numba ofdm optical-communications photonics python split-step-fourier-method

Last synced: 22 Aug 2026

https://github.com/vidarsko/ComFiT

A python library for simulating field theories with topological defects

Last synced: 22 Aug 2026

https://github.com/spjuhel/BoARIO

Python implementation of ARIO model

Last synced: 22 Aug 2026

https://github.com/bigraph-toolkit-suite/bigraphs.grgen-bigraphs

BiGGer is a transformation tool and library that translates bigraphical models and rules to GrGen.NET-compatible files. It enables bigraph rewriting using GrGen.NET.

bigraphs graph-rewriting graph-transformation grgen rules-engine simulation

Last synced: 22 Aug 2026

https://github.com/cblearn/cblearn

Comparison-based Machine Learning in Python

embedding machine-learning machinelearning multidimensional multidimensional-scaling non-metric ordinal scaling scikit-learn

Last synced: 22 Aug 2026

https://github.com/LeoEgidi/pivmet

pivmet: an R package proposing pivotal methods for consensus clustering and mixture modeling

Last synced: 22 Aug 2026

https://github.com/RAMP-project/RAMP

Repository of the open-source RAMP model for generating multi-energy loads profiles

Last synced: 22 Aug 2026

https://github.com/sntioudis/papreca

PAPRECA hybrid off-lattice kinetic Monte Carlo/molecular dynamics (kMC/MD) simulator

Last synced: 22 Aug 2026

https://github.com/m-dadej/MarSwitching.jl

MarSwitching.jl: Julia package for Markov switching dynamic models :chart_with_upwards_trend:

data-science econometrics julia machine-learning markov-chain statistics time-series

Last synced: 22 Aug 2026

https://github.com/MayaWaves/mayawaves

Last synced: 22 Aug 2026

https://github.com/nifty-ppl/nifty

Probabilistic programming framework for signal inference algorithms that operate regardless of the underlying grids and their resolutions

Last synced: 22 Aug 2026

https://github.com/soundata/soundata

Python library for downloading, loading & working with sound datasets

audio bioacoustics dataset environmental-sound python urban-sound

Last synced: 22 Aug 2026

https://github.com/mathopt/DynamicOED.jl

Optimal experimental design of ODE and DAE systems in julia

mixed-integer-programming optimal-control optimal-experimental-design sciml

Last synced: 22 Aug 2026

https://github.com/baxmittens/OpenGeoSysUncertaintyQuantification.jl

An uncertainty quantification toolbox for OpenGeoSys 6

Last synced: 22 Aug 2026

https://github.com/actris-cloudnet/mwrpy

Python package for Microwave Radiometer processing in ACTRIS

Last synced: 22 Aug 2026

https://github.com/CompNet/Renard

Relationship Extraction from NARrative Documents

alias-resolution character-networks coreference-resolution ner network-extraction novels speaker-attribution

Last synced: 22 Aug 2026

https://github.com/NIFTy-PPL/JAXbind

Bind any function written in another language to JAX with support for JVP/VJP/batching/jit compilation

Last synced: 22 Aug 2026

https://github.com/PdIPS/CBX

Last synced: 22 Aug 2026

https://github.com/david-mathews-1994/deltarice

A high-performance compression library optimized for up-to 16-bit digitized analog signals

Last synced: 22 Aug 2026

https://github.com/canimus/cuallee

Possibly the fastest DataFrame-agnostic quality check library in town.

bigdata data-quality data-quality-checks dataquality pandas performance-metrics pydeequ pyspark python3 snowpark unit-testing

Last synced: 22 Aug 2026

https://github.com/hypre-space/hypredrive

Flexible engine for solving linear systems with hypre

hpc linear-solvers linear-systems math-libraries

Last synced: 22 Aug 2026

https://github.com/ericfell/rfbzero

Redox flow battery electrochemical cycling models in Python

batteries battery-models microkinetics python rfbzero simulation

Last synced: 22 Aug 2026

https://github.com/seisman/HinetPy

A Python package for accessing and processing NIED Hi-net seismic data.

hinet python sac seismology win32

Last synced: 22 Aug 2026

https://github.com/jeancmaia/mcglm

Python Framework for Multivariate Covariance Generalized Linear Models

data-science python statistical-inference statistical-models

Last synced: 22 Aug 2026

https://github.com/sourmash-bio/sourmash

Quickly search, compare, and analyze genomic and metagenomic data sets.

bioinformatics fracminhash hacktoberfest kmer minhash python rust scaled-minhash sketching sourmash taxonomic-classification taxonomic-profiling

Last synced: 22 Aug 2026

https://gitlab.com/libreumg/dataquier

Data quality assessments <https://doi.org/10.21105/joss.03093> guided by a data quality framework <https://doi.org/10.1186/s12874-021-01252-7> target the data quality dimensions integrity, completeness, consistency, and accuracy.

data quality

Last synced: 22 Aug 2026

https://github.com/UM-KevinHe/surtvep

Last synced: 22 Aug 2026

https://github.com/xCDAT/xcdat

An extension of xarray for climate data analysis on structured grids.

cdat cf-conventions climate-analysis climate-data climate-data-analysis climate-research climate-science climate-sciences cmip cmip6 e3sm earth-system earth-system-data earth-system-science pcmdi python xarray xcdat

Last synced: 22 Aug 2026

https://github.com/jeertmans/DiffeRT2d

2D Toolbox for Differentiable Ray Tracing

2d differentiable raytracing telecommunications

Last synced: 22 Aug 2026

https://github.com/extendr/extendr

R extension library for rust designed to be familiar to R users.

api-wrapper extension ffi-bindings r rust

Last synced: 22 Aug 2026

https://github.com/SatelliteShorelines/CoastSeg

An interactive toolbox for downloading satellite imagery, applying image segmentation models, mapping shoreline positions and more. The mapping extension for CoastSat and Zoo.

colab earth-engine jupyter landsat python

Last synced: 22 Aug 2026

https://github.com/JIBSIL/DistriFS

Distributed, efficient and secure filesystem coded in Go

Last synced: 22 Aug 2026

https://github.com/IBM/topography-searcher

This Python package is designed for mapping the solution space of machine learning models. An understanding of the organisation of the solution space can answer important questions about the reproducibility, explainability and performance of ML methods.

Last synced: 22 Aug 2026

https://github.com/nipy/heudiconv/

Flexible DICOM conversion into structured directory layouts

Last synced: 22 Aug 2026

https://github.com/nedtaylor/athena

A Fortran-based neural network library for physics-based applications. Alongside standard neural network layer types, it also supports graph-based layers and physics informed neural networks.

automatic-differentiation cnn convolution convolutional-neural-networks deep-learning feed-forward-neural-networks fortran fortran-package-manager graph-neural-network inverse-design machine-learning message-passing-neural-network neural-network physics-informed-neural-networks

Last synced: 22 Aug 2026

https://github.com/heli-xu/findSVI

Calculate CDC/ATSDR Social Vulnerability Index

Last synced: 22 Aug 2026

https://github.com/juanmc2005/diart

A python package to build AI-powered real-time audio applications

deep-learning real-time speaker-diarization speaker-embedding streaming-audio transcription voice-activity-detection

Last synced: 22 Aug 2026

https://gitlab.com/dlr-ve/esy/remix/framework

The REMix framework for energy system optimization models

Last synced: 22 Aug 2026

https://github.com/nci/scores/

scores: Metrics for the verification, evaluation and optimisation of forecasts, predictions or models.

climate contingency-table dask forecast-evaluation forecast-verification forecasting model-validation oceanography pandas python verification weather xarray

Last synced: 22 Aug 2026

https://github.com/PennyLaneAI/catalyst

A JIT compiler for hybrid quantum programs in PennyLane

autodiff automatic-differentiation jax jit llvm mlir pennylane python qir quantum quantum-compiler quantum-computing

Last synced: 22 Aug 2026

https://github.com/SERVIR/servir-aces

Agricultural Classification and Estimation Service

agriculture mapping remote-sensing

Last synced: 22 Aug 2026

https://github.com/nimble-dev/nimbleHMC

HMC and other derivative-based MCMC sampling algorithms for the nimble package

Last synced: 22 Aug 2026

https://github.com/VasuLab/rgfrosh

A frozen shock solver for ideal and real gas equations of state.

equation-of-state ideal-gas numpy python real-gas shock-tube

Last synced: 22 Aug 2026

https://github.com/capstone-insper/drone-swarm-search

The Drone Swarm Search project provides an environment for SAR missions built on PettingZoo, where agents, represented by drones, are tasked with locating targets identified as shipwrecked individuals.

ai multi-agent-reinforcement-learning multiagent-reinforcement-learning pettingzoo pygame python rl

Last synced: 22 Aug 2026

https://github.com/uwsbel/low-fidelity-dynamic-models

A library of fast and accurate low fidelity dynamic models for applications in robotics

Last synced: 22 Aug 2026

https://github.com/thiago-glissoi/FFF-Line-Segmentation

The fff_segmenter algorithm is used to segment an acoustic signal obtained from a first layer 3D print into multiple acoustic blocks related to specific geometrical elements of the printed part, such as contour lines, raster lines, and transition between raster lines.

Last synced: 22 Aug 2026

https://github.com/JuliaDynamics/TransitionsInTimeseries.jl

Transition Indicators / Early Warning Signals / Regime Shifts / Change Point Detection

change-point-detection critical-slowing-down critical-transitions early-warning-signals hacktoberfest nonlinear-dynamics nonlinear-timeseries-analysis resilience-loss tipping-points

Last synced: 22 Aug 2026

https://github.com/PBjam-projects/reggae

pbjam for dipole modes

Last synced: 22 Aug 2026

https://github.com/FAST-LB/pyGCodeDecode

Generate time dependent boundary conditions from a .gcode file.

additive-manufacturing am engineering fdm fff fused-deposition-modelling fused-filament-fabrication gcode material-extrusion mex simulation

Last synced: 22 Aug 2026

https://github.com/ForsbergPsychometrics/D3mirt

Descriptive 3D Item Response Theory Methods

Last synced: 22 Aug 2026

https://github.com/limengbinggz/ddtlcm

Last synced: 22 Aug 2026

https://github.com/New-Horizons-SPM/scanbot

STM Automation Bot

automation nanonis nanonistcp nc-afm python scanbot spm stm

Last synced: 22 Aug 2026

https://github.com/nathanReitinger/CART

CART (Culling Abstracts for Relevancy in Teams) provides a way for a team of individuals to complete the first step in most systematic review projects: culling, in teams, a large set of research papers (i.e., titles and abstracts) based on per-project relevancy criteria.

Last synced: 22 Aug 2026

https://github.com/Moore-Institute-4-Plastic-Pollution-Res/One4All

R package for data validation and visualization with a focus on microplastic data.

Last synced: 21 Aug 2026

https://github.com/yotarazona/scikit-eo

A Python package for Remote Sensing Data Analysis

Last synced: 22 Aug 2026

https://github.com/dms-viz/dms-viz.github.io

Interactive tool for visualizing site-level data on a protein structure

Last synced: 22 Aug 2026

https://github.com/amberbiology/scribl

Semantic Capture of Relationships In Biological Literature (scribl)

computational-biology literature-mining network-biology systems-biology

Last synced: 22 Aug 2026

https://github.com/hydroframe/subsettools

Subsetting tools and utilities for ParFlow hydrological modeling

Last synced: 22 Aug 2026

https://github.com/m-d-grunnill/MetaCast

A package for broadcasting epidimiological and ecological models over metapopulations.

Last synced: 22 Aug 2026

https://github.com/b-pardi/pyQCM

Python based computational for for analyzing quartz crystal microbalance with dissipation (QCM-D) experimental data

Last synced: 22 Aug 2026

https://github.com/jcorbino/mole

Mimetic Operators Library Enhanced

finite-differences mimetic numerical-methods pde vector-calculus

Last synced: 22 Aug 2026

https://github.com/oncoray/mirp

Medical Image Radiomics Processor

image-processing radiomics

Last synced: 22 Aug 2026

https://gitlab.com/open-darts/open-darts

The DARTS framework is designed for forward and inverse modeling in geo-energy applications.

energy transition geothermal energy production modeling of CO2 sequestration

Last synced: 22 Aug 2026

https://github.com/EhsanGharibNezhad/TelescopeML

Deep Convolutional Neural Networks and Machine Learning Models for Analyzing Stellar and Exoplanetary Telescope Spectra

astronomy atmospheric-modelling convolutional-neural-networks machine-learning star telescope

Last synced: 22 Aug 2026

https://github.com/AStcherbinine/omegapy

Python tools for OMEGA/MEx observation data (importation/correction/display).

astronomy physics planetary-science python3

Last synced: 22 Aug 2026

https://github.com/votca/votca

The source of the votca-csg and xtp packages

charge-transport coarse-grained-molecular-dynamics coarse-graining excited-states gromacs gw-bse molecular-dynamics multiscale-simulation votca

Last synced: 22 Aug 2026

https://github.com/Quantum-Optics-LKB/NLSE

Non linear Schrödinger equation solver

simulation

Last synced: 22 Aug 2026

https://github.com/CM2S/piglot

A package for the optimisation of numerical responses

bayesian-optimization optimisation parameter-identification physics-solvers python

Last synced: 22 Aug 2026

https://github.com/Cloud-Drift/clouddrift

CloudDrift accelerates the use of Lagrangian data for atmospheric, oceanic, and climate sciences.

climate-data climate-science data-structures oceanography python

Last synced: 22 Aug 2026

https://github.com/Sm00thix/IKPLS

Fast CPU and GPU Python implementations of Improved Kernel Partial Least Squares (PLS) by Dayal and MacGregor (1997) and Fast Partition-Based Cross-Validation With Centering and Scaling for XTX and XTY by Engstrøm and Jensen (2025). This package also includes options to use sample weights for PLS modeling.

algorithm data-science gpu-support linear-regression partial-least-squares partial-least-squares-regression pls plsda plsr tpu-acceleration weighted-least-squares weighted-linear-regression weighted-regression

Last synced: 22 Aug 2026

https://github.com/mnets/pymnet

The original library for analyzing multilayer networks.

multilayer-networks network-analysis python

Last synced: 22 Aug 2026

https://github.com/markblokpoel/mathlib

Last synced: 22 Aug 2026

https://github.com/TommyJones/tidylda

Implements an algorithim for Latent Dirichlet Allocation using style conventions from the [tidyverse](https://style.tidyverse.org/) and [tidymodels](https://tidymodels.github.io/model-implementation-principles/index.html).

Last synced: 22 Aug 2026

https://github.com/tsipkens/atems

A MATLAB codebase to analyze TEM images of soot, which includes new methods associated with this project and a compilation of other pre-existing methods into a single package.

aerosols aggregates image-processing particle-diameter particle-size-distribution soot tem tem-images transmission-electron-microscopy

Last synced: 22 Aug 2026

https://github.com/CLIMADA-project/climada_python

CLIMADA is a free and open-source software framework for climate risk assessment and adaptation option appraisal.

Last synced: 22 Aug 2026

https://github.com/hydroframe/hf_hydrodata

Last synced: 22 Aug 2026

https://github.com/USEPA/SSN2

SSN2: Spatial Modeling on Stream Networks in R

Last synced: 22 Aug 2026

https://github.com/hippylib/soupy

Stochastic Optimization under Uncertainty in Python.

Last synced: 22 Aug 2026

https://github.com/mjcarley/nbi/

Nystrom Boundary Integral codes for Laplace and Helmholtz problems

Last synced: 22 Aug 2026

https://github.com/slimgroup/InvertibleNetworks.jl

A Julia framework for invertible neural networks

bayesian-inference deep-invertible-networks deep-learning invertible-1x1-convolutions invertible-neural-networks julia julia-language machine-learning normalizing-flow normalizing-flows

Last synced: 22 Aug 2026

https://github.com/xianggebenben/GraphSL

Graph Source Localization Library

inverse-problems source-localization

Last synced: 22 Aug 2026

https://github.com/IonRepo/IonDiff

Unsupervised identification and analysis of ion-hopping events in solid state electrolytes.

Last synced: 22 Aug 2026

https://github.com/airexlab/fastvpinns

FastVPINNs - A tensor-driven acceleration of VPINNs for complex geometries

deep-learning inverse-problems neural-network partial-differential-equations physics-informed-neural-networks pinn scientific-machine-learning tensorflow2

Last synced: 22 Aug 2026

https://github.com/AtrCheema/SeqMetrics

Various errors for tabular/structured/time-series data

errors loss performance-metrics score

Last synced: 22 Aug 2026

https://github.com/mrazomej/AutoEncoderToolkit.jl

Julia package with several functions to train and analyze Autoencoder-based neural networks

Last synced: 22 Aug 2026

https://github.com/paucablop/chemotools

The scikit-learn-native foundation package for chemometrics 🧪 🤖

artificial-intelligence autoencoders chemometrics deep-learning hacktoberfest ir-spectroscopy machine-learning multivariate-analysis nir-spectroscopy python raman-spectroscopy scikit-learn sklearn spectra spectroscopy