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Summary

An open API service for producing an overview of a list of open source projects.

JOSS: https://github.com/sourmash-bio/sourmash

bioinformatics fracminhash hacktoberfest kmer minhash python rust scaled-minhash sketching sourmash taxonomic-classification taxonomic-profiling

Score: 24.814576669259903

Last synced: about 5 hours ago
JSON representation

Repository metadata:

Quickly search, compare, and analyze genomic and metagenomic data sets.

CodeMeta metadata:

Owner metadata:

GitHub Events

Total
Last Year

Committers metadata

Last synced: 12 days ago

Total Commits: 2,208
Total Committers: 48
Avg Commits per committer: 46.0
Development Distribution Score (DDS): 0.506

Commits in past year: 150
Committers in past year: 6
Avg Commits per committer in past year: 25.0
Development Distribution Score (DDS) in past year: 0.547

Name Email Commits
C. Titus Brown t****s@i****g 1091
dependabot[bot] 4****] 506
Luiz Irber l****r 288
Tessa Pierce Ward b****s 83
pre-commit-ci[bot] 6****] 82
Laurent Gautier l****r@g****m 28
Keya Barve 5****e 22
Tim Head b****m@g****m 12
Mohamed Abuelanin m****n@g****m 10
Olga Botvinnik o****k@g****m 8
Taylor Reiter t****r@g****m 7
Erik Young 6****5 7
Pranathi Vemuri p****i@g****m 5
dependabot-preview[bot] 2****] 4
brooksph p****s@g****m 4
S. Joshua Swamidass s****s@g****m 3
ccbaumler 6****r 3
Michael R. Crusoe 1****c 3
Hannah Eve Houts 4****s 3
David Koslicki d****i@g****m 2
Connor Tiffany c****y@u****u 2
Harriet Alexander h****r@g****m 2
Camille Scott c****w@g****m 2
Connor Tiffany c****u 2
Luca Cappelletti c****4@g****m 2
Peter Cock p****k@g****m 2
haoyu-haoyu 8****u 2
Daniel Standage d****e@g****m 2
Jason Stajich j****h@u****u 2
pyup.io bot g****t@p****o 1
and 18 more...

Issue and Pull Request metadata

Last synced: 17 days ago

Total issues: 614
Total pull requests: 1,322
Average time to close issues: 10 months
Average time to close pull requests: 15 days
Total issue authors: 86
Total pull request authors: 22
Average comments per issue: 1.97
Average comments per pull request: 1.87
Merged pull request: 1,033
Bot issues: 3
Bot pull requests: 767

Past year issues: 53
Past year pull requests: 176
Past year average time to close issues: 30 days
Past year average time to close pull requests: 4 days
Past year issue authors: 12
Past year pull request authors: 7
Past year average comments per issue: 0.47
Past year average comments per pull request: 1.54
Past year merged pull request: 97
Past year bot issues: 1
Past year bot pull requests: 114

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/sourmash-bio/sourmash

Top Issue Authors

  • ctb (396)
  • bluegenes (42)
  • mr-eyes (16)
  • luizirber (14)
  • ccbaumler (13)
  • taylorreiter (8)
  • jessicalumian (7)
  • AnneliektH (6)
  • Amanda-Biocortex (5)
  • yuzie0314 (5)
  • jorondo1 (4)
  • jodyphelan (4)
  • shenwei356 (3)
  • phiweger (3)
  • agombolay (3)

Top Pull Request Authors

  • dependabot[bot] (659)
  • ctb (324)
  • luizirber (115)
  • pre-commit-ci[bot] (108)
  • bluegenes (77)
  • mr-c (6)
  • LucaCappelletti94 (6)
  • olgabot (5)
  • mr-eyes (3)
  • ccbaumler (3)
  • Glfrey (2)
  • cmatKhan (2)
  • magikcarp (2)
  • fossabot (2)
  • hyphaltip (1)

Top Issue Labels

  • 5.0 (41)
  • doc (39)
  • rust (22)
  • plugin_todo (22)
  • code (13)
  • faq (11)
  • fyi (10)
  • enhancement (9)
  • taxonomy (7)
  • plugin (6)
  • sbt (5)
  • md5sum (4)
  • question (4)
  • tutorial (4)
  • speeding-up-gather (4)
  • good first issue (4)
  • revisit_me (3)
  • example (3)
  • dependencies (3)
  • python (2)
  • use-case (2)
  • idea (2)
  • databases (2)
  • videos (1)
  • bug (1)
  • benchmarking (1)
  • talks (1)
  • paper (1)
  • good next issue (1)
  • developer_infrastructure (1)

Top Pull Request Labels

  • dependencies (658)
  • rust (477)
  • github_actions (156)
  • python (43)
  • msrv (1)
  • plugin (1)
  • doc (1)

Package metadata

pypi.org: sourmash

tools for comparing biological sequences with k-mer sketches

  • Homepage: https://sourmash.bio/
  • Documentation: https://sourmash.readthedocs.io
  • Licenses: other
  • Latest release: 4.9.4 (published 11 months ago)
  • Last Synced: 2026-06-15T22:03:31.636Z (12 days ago)
  • Versions: 82
  • Dependent Packages: 15
  • Dependent Repositories: 21
  • Downloads: 8,234 Last month
  • Docker Downloads: 0
  • Rankings:
    • Dependent packages count: 0.902%
    • Docker downloads count: 1.237%
    • Dependent repos count: 3.163%
    • Stargazers count: 3.246%
    • Average: 3.46%
    • Forks count: 5.049%
    • Downloads: 7.162%
  • Maintainers (3)
proxy.golang.org: github.com/sourmash-bio/sourmash

npmjs.org: sourmash

tools for comparing biological sequences with k-mer sketches

  • Homepage: https://github.com/sourmash-bio/sourmash#readme
  • Licenses: BSD-3-Clause
  • Latest release: 0.23.0 (published 21 days ago)
  • Last Synced: 2026-06-15T22:03:28.712Z (12 days ago)
  • Versions: 31
  • Dependent Packages: 1
  • Dependent Repositories: 2
  • Downloads: 274 Last month
  • Rankings:
    • Stargazers count: 3.224%
    • Forks count: 3.361%
    • Downloads: 5.506%
    • Dependent repos count: 7.638%
    • Average: 8.139%
    • Dependent packages count: 20.968%
  • Maintainers (1)
crates.io: sourmash

tools for comparing biological sequences with k-mer sketches

  • Homepage:
  • Documentation: https://docs.rs/sourmash/
  • Licenses: BSD-3-Clause
  • Latest release: 0.23.0 (published 21 days ago)
  • Last Synced: 2026-06-15T22:03:32.318Z (12 days ago)
  • Versions: 29
  • Dependent Packages: 1
  • Dependent Repositories: 2
  • Downloads: 61,707 Total
  • Rankings:
    • Forks count: 7.543%
    • Stargazers count: 8.528%
    • Average: 13.074%
    • Dependent repos count: 13.204%
    • Downloads: 17.91%
    • Dependent packages count: 18.187%
  • Maintainers (2)
conda-forge.org: sourmash-minimal

This is a minimal version that avoids heavy dependencies and is as cross-platform as possible. For the complete version check the sourmash package in bioconda.

  • Homepage: https://github.com/sourmash-bio/sourmash
  • Licenses: BSD-3-Clause
  • Latest release: 4.5.0 (published almost 4 years ago)
  • Last Synced: 2026-03-22T02:10:54.806Z (3 months ago)
  • Versions: 20
  • Dependent Packages: 0
  • Dependent Repositories: 1
  • Downloads: 828,881 Total
  • Rankings:
    • Stargazers count: 20.829%
    • Forks count: 22.541%
    • Dependent repos count: 24.377%
    • Average: 29.834%
    • Dependent packages count: 51.589%

Dependencies

.github/workflows/asv.yml actions
  • actions-rs/toolchain v1 composite
  • actions/checkout v3 composite
  • actions/setup-python v4 composite
.github/workflows/build_wheel.yml actions
  • actions/checkout v3 composite
  • actions/download-artifact v3 composite
  • actions/setup-python v4 composite
  • actions/upload-artifact v3 composite
  • fnkr/github-action-ghr v1 composite
  • pypa/cibuildwheel v2.12.0 composite
.github/workflows/build_wheel_all_archs.yml actions
  • actions/checkout v3 composite
  • actions/download-artifact v3 composite
  • actions/setup-python v4 composite
  • actions/upload-artifact v3 composite
  • docker/setup-qemu-action v2 composite
  • fnkr/github-action-ghr v1 composite
  • pierotofy/set-swap-space v1.0 composite
  • pypa/cibuildwheel v2.12.0 composite
.github/workflows/dev_envs.yml actions
  • actions/cache v3 composite
  • actions/checkout v3 composite
  • cachix/install-nix-action v18 composite
  • conda-incubator/setup-miniconda 3b0f2504dd76ef23b6d31f291f4913fb60ab5ff3 composite
.github/workflows/hypothesis.yml actions
  • actions/checkout v3 composite
  • actions/setup-python v4 composite
.github/workflows/metadata.yml actions
  • actions/checkout v3 composite
.github/workflows/python.yml actions
  • actions/cache v3 composite
  • actions/checkout v3 composite
  • actions/setup-python v4 composite
  • ibnesayeed/setup-ipfs master composite
  • r-lib/actions/setup-pandoc v2 composite
  • supercharge/redis-github-action 4b67a313c69bc7a90f162e8d810392fffe10d3b5 composite
.github/workflows/rust.yml actions
  • actions-rs/cargo v1 composite
  • actions-rs/install v0.1 composite
  • actions-rs/toolchain v1 composite
  • actions/checkout v3 composite
  • actions/setup-node v3 composite
  • actions/setup-python v4 composite
  • actions/upload-artifact v3 composite
  • codecov/codecov-action v3 composite
.github/workflows/rust_publish.yml actions
  • actions-rs/cargo v1 composite
  • actions-rs/toolchain v1 composite
  • actions/checkout v3 composite
  • actions/setup-node v3 composite
Cargo.lock cargo
  • 163 dependencies
src/core/Cargo.toml cargo
  • assert_matches 1.3.0 development
  • criterion 0.3.2 development
  • getrandom 0.2 development
  • needletail 0.4.1 development
  • proptest 1.0.0 development
  • rand 0.8.2 development
  • tempfile 3.1.0 development
  • az 1.0.0
  • bytecount 0.6.0
  • byteorder 1.4.3
  • cfg-if 1.0
  • counter 0.5.7
  • finch 0.5.0
  • fixedbitset 0.4.0
  • getset 0.1.1
  • log 0.4.8
  • md5 0.7.0
  • memmap2 0.5.8
  • murmurhash3 0.0.5
  • niffler 2.3.1
  • nohash-hasher 0.2.0
  • num-iter 0.1.43
  • once_cell 1.17.0
  • ouroboros 0.15.0
  • piz 0.4.0
  • primal-check 0.3.1
  • rayon 1.6.1
  • serde 1.0.152
  • serde_json 1.0.91
  • thiserror 1.0
  • twox-hash 1.6.0
  • typed-builder 0.11.0
  • vec-collections 0.3.4
binder/environment.yml pypi
  • matplotlib_venn *
  • mmh3 *