JOSS: https://github.com/amberbiology/scribl
computational-biology literature-mining network-biology systems-biology
Score: 8.728264161496178
Last synced: about 12 hours ago
JSON representation
Repository metadata:
Semantic Capture of Relationships In Biological Literature (scribl)
- Host: GitHub
- URL: https://github.com/amberbiology/scribl
- Owner: amberbiology
- License: agpl-3.0
- Created: 2023-12-22T00:43:06.000Z (over 2 years ago)
- Default Branch: main
- Last Pushed: 2026-06-08T22:51:50.000Z (12 days ago)
- Last Synced: 2026-06-11T18:03:33.927Z (10 days ago)
- Topics: computational-biology, literature-mining, network-biology, systems-biology
- Language: Python
- Homepage: https://amberbiology.com/
- Size: 5.96 MB
- Stars: 5
- Watchers: 2
- Forks: 1
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- Changelog: CHANGELOG.md
- Contributing: CONTRIBUTING.md
- License: LICENSE
- Citation: CITATION.cff
- Zenodo: .zenodo.json
Owner metadata:
- Name: Amber Biology
- Login: amberbiology
- Email: info@amberbiology.com
- Kind: organization
- Description: Amber Biology's Code Repository
- Website: http://amberbiology.com
- Location: Cambridge MA
- Twitter: amberbiology
- Company:
- Icon url: https://avatars.githubusercontent.com/u/14062141?v=4
- Repositories: 1
- Last Synced at: 2023-12-22T20:55:24.026Z
- Profile URL: https://github.com/amberbiology
GitHub Events
Total
- Create event: 82
- Delete event: 76
- Issue comment event: 9
- Pull request event: 132
- Pull request review event: 52
- Push event: 161
- Release event: 7
- Watch event: 2
- Total: 521
Last Year
- Create event: 54
- Delete event: 44
- Issue comment event: 9
- Pull request event: 79
- Pull request review event: 29
- Push event: 89
- Release event: 4
- Watch event: 1
- Total: 309
Committers metadata
Last synced: 6 days ago
Total Commits: 201
Total Committers: 5
Avg Commits per committer: 40.2
Development Distribution Score (DDS): 0.647
Commits in past year: 109
Committers in past year: 5
Avg Commits per committer in past year: 21.8
Development Distribution Score (DDS) in past year: 0.587
| Name | Commits | |
|---|---|---|
| dependabot[bot] | 4****] | 71 |
| pre-commit-ci[bot] | 6****] | 58 |
| Alex Lancaster | a****r | 53 |
| ci-scribl | u****e | 10 |
| zenodraft/action | 9 |
Issue and Pull Request metadata
Last synced: 5 days ago
Total issues: 1
Total pull requests: 177
Average time to close issues: N/A
Average time to close pull requests: about 23 hours
Total issue authors: 1
Total pull request authors: 4
Average comments per issue: 0.0
Average comments per pull request: 0.09
Merged pull request: 151
Bot issues: 0
Bot pull requests: 150
Past year issues: 0
Past year pull requests: 63
Past year average time to close issues: N/A
Past year average time to close pull requests: about 20 hours
Past year issue authors: 0
Past year pull request authors: 3
Past year average comments per issue: 0
Past year average comments per pull request: 0.11
Past year merged pull request: 52
Past year bot issues: 0
Past year bot pull requests: 62
Top Issue Authors
- benlansdell (1)
Top Pull Request Authors
- dependabot[bot] (91)
- pre-commit-ci[bot] (59)
- alexlancaster (25)
- atrisovic (2)
Top Issue Labels
Top Pull Request Labels
- dependencies (92)
- python (88)
- skip-changelog (54)
- github_actions (9)
- documentation (7)
- enhancement (6)
- bug (6)
Package metadata
- Total packages: 1
-
Total downloads:
- pypi: 246 last-month
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 8
- Total maintainers: 1
pypi.org: scribl
A system for the semantic capture of relationships in biological literature
- Homepage: http://amberbiology.com
- Documentation: https://scribl.readthedocs.io/
- Licenses: GNU AGPLv3+
- Latest release: 0.8.5 (published 26 days ago)
- Last Synced: 2026-06-15T20:01:40.822Z (6 days ago)
- Versions: 8
- Dependent Packages: 0
- Dependent Repositories: 0
- Downloads: 246 Last month
-
Rankings:
- Dependent packages count: 10.667%
- Average: 35.368%
- Dependent repos count: 60.068%
- Maintainers (1)
Dependencies
- matplotlib <= 3.8.2
- networkx <= 3.2.1
- pandas <= 2.1.4
- pyparsing <= 3.1.1
- pyzotero <= 1.5.18