{"id":356609,"url":"https://github.com/amberbiology/scribl","last_synced_at":"2026-06-20T22:30:25.495Z","repository":{"id":213750018,"uuid":"734542488","full_name":"amberbiology/scribl","owner":"amberbiology","description":"Semantic Capture of Relationships In Biological Literature (scribl) ","archived":false,"fork":false,"pushed_at":"2026-06-08T22:51:50.000Z","size":6252,"stargazers_count":5,"open_issues_count":0,"forks_count":1,"subscribers_count":2,"default_branch":"main","last_synced_at":"2026-06-11T18:03:33.927Z","etag":null,"topics":["computational-biology","literature-mining","network-biology","systems-biology"],"latest_commit_sha":null,"homepage":"https://amberbiology.com/","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"agpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/amberbiology.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":".zenodo.json","notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2023-12-22T00:43:06.000Z","updated_at":"2026-06-08T22:51:46.000Z","dependencies_parsed_at":"2024-04-09T03:22:06.572Z","dependency_job_id":"c610d590-9d16-4902-9d7a-4d7475734a32","html_url":"https://github.com/amberbiology/scribl","commit_stats":null,"previous_names":["amberbiology/scribl"],"tags_count":19,"template":false,"template_full_name":null,"purl":"pkg:github/amberbiology/scribl","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/amberbiology%2Fscribl","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/amberbiology%2Fscribl/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/amberbiology%2Fscribl/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/amberbiology%2Fscribl/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/amberbiology","download_url":"https://codeload.github.com/amberbiology/scribl/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/amberbiology%2Fscribl/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":34296385,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-05-26T15:22:16.424Z","status":"online","status_checked_at":"2026-06-13T02:00:06.617Z","response_time":62,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"amberbiology","name":"Amber Biology","uuid":"14062141","kind":"organization","description":"Amber Biology's Code Repository","email":"info@amberbiology.com","website":"http://amberbiology.com","location":"Cambridge MA","twitter":"amberbiology","company":null,"icon_url":"https://avatars.githubusercontent.com/u/14062141?v=4","repositories_count":1,"last_synced_at":"2023-12-22T20:55:24.026Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/amberbiology","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2023-12-22T20:55:24.041Z","updated_at":"2023-12-22T20:55:24.041Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/amberbiology","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/amberbiology/repositories"},"packages":[{"id":10583078,"name":"scribl","ecosystem":"pypi","description":"A system for the semantic capture of relationships in biological literature","homepage":"http://amberbiology.com","licenses":"GNU AGPLv3+","normalized_licenses":["GPL-3.0"],"repository_url":"https://github.com/amberbiology/scribl","keywords_array":["systems biology","network biology","literature database"],"namespace":null,"versions_count":8,"first_release_published_at":"2024-07-08T04:07:45.000Z","latest_release_published_at":"2026-05-26T04:48:46.000Z","latest_release_number":"0.8.5","last_synced_at":"2026-06-15T20:01:40.822Z","created_at":"2024-07-08T04:48:19.697Z","updated_at":"2026-06-15T20:01:40.822Z","registry_url":"https://pypi.org/project/scribl/","install_command":"pip install scribl --index-url https://pypi.org/simple","documentation_url":"https://scribl.readthedocs.io/","metadata":{"funding":null,"documentation":null,"classifiers":["Intended Audience :: Science/Research","Programming Language :: Python :: 3","Topic :: Scientific/Engineering :: Bio-Informatics"],"normalized_name":"scribl","project_status":null},"repo_metadata":{"id":213750018,"uuid":"734542488","full_name":"amberbiology/scribl","owner":"amberbiology","description":"Semantic Capture of Relationships In Biological Literature (scribl) ","archived":false,"fork":false,"pushed_at":"2026-06-03T11:22:04.000Z","size":6246,"stargazers_count":5,"open_issues_count":1,"forks_count":1,"subscribers_count":2,"default_branch":"main","last_synced_at":"2026-06-03T14:03:32.097Z","etag":null,"topics":["computational-biology","literature-mining","network-biology","systems-biology"],"latest_commit_sha":null,"homepage":"https://amberbiology.com/","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"agpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/amberbiology.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":".zenodo.json","notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2023-12-22T00:43:06.000Z","updated_at":"2026-06-02T02:36:50.000Z","dependencies_parsed_at":"2024-04-09T03:22:06.572Z","dependency_job_id":"c610d590-9d16-4902-9d7a-4d7475734a32","html_url":"https://github.com/amberbiology/scribl","commit_stats":null,"previous_names":["amberbiology/scribl"],"tags_count":19,"template":false,"template_full_name":null,"purl":"pkg:github/amberbiology/scribl","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/amberbiology%2Fscribl","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/amberbiology%2Fscribl/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/amberbiology%2Fscribl/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/amberbiology%2Fscribl/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/amberbiology","download_url":"https://codeload.github.com/amberbiology/scribl/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/amberbiology%2Fscribl/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":33946818,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-05-26T15:22:16.424Z","status":"online","status_checked_at":"2026-06-05T02:00:06.157Z","response_time":120,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"amberbiology","name":"Amber Biology","uuid":"14062141","kind":"organization","description":"Amber Biology's Code Repository","email":"info@amberbiology.com","website":"http://amberbiology.com","location":"Cambridge MA","twitter":"amberbiology","company":null,"icon_url":"https://avatars.githubusercontent.com/u/14062141?v=4","repositories_count":1,"last_synced_at":"2023-12-22T20:55:24.026Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/amberbiology","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2023-12-22T20:55:24.041Z","updated_at":"2023-12-22T20:55:24.041Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/amberbiology","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/amberbiology/repositories"},"tags":[{"name":"v0.8.5","sha":"c4881aeadead82c44d76be0351da5d728e0728a2","kind":"commit","published_at":"2026-05-26T04:45:40.000Z","download_url":"https://codeload.github.com/amberbiology/scribl/tar.gz/v0.8.5","html_url":"https://github.com/amberbiology/scribl/releases/tag/v0.8.5","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/amberbiology/scribl@v0.8.5","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/amberbiology%2Fscribl/tags/v0.8.5","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/amberbiology%2Fscribl/tags/v0.8.5/manifests"},{"name":"v0.8.4","sha":"41c67b01a5dd14bf091083a960b3e05c44596259","kind":"commit","published_at":"2025-12-11T22:22:47.000Z","download_url":"https://codeload.github.com/amberbiology/scribl/tar.gz/v0.8.4","html_url":"https://github.com/amberbiology/scribl/releases/tag/v0.8.4","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/amberbiology/scribl@v0.8.4","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/amberbiology%2Fscribl/tags/v0.8.4","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/amberbiology%2Fscribl/tags/v0.8.4/manifests"},{"name":"v0.8.3","sha":"eb794c57eae43e8f783d5c34947ee28aa6b48e91","kind":"commit","published_at":"2025-08-18T04:41:05.000Z","download_url":"https://codeload.github.com/amberbiology/scribl/tar.gz/v0.8.3","html_url":"https://github.com/amberbiology/scribl/releases/tag/v0.8.3","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/amberbiology/scribl@v0.8.3","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/amberbiology%2Fscribl/tags/v0.8.3","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/amberbiology%2Fscribl/tags/v0.8.3/manifests"},{"name":"v0.7.19","sha":"79b7af9b55c8f9a8f2259cabfd2b130ebbe60949","kind":"commit","published_at":"2025-08-18T04:12:24.000Z","download_url":"https://codeload.github.com/amberbiology/scribl/tar.gz/v0.7.19","html_url":"https://github.com/amberbiology/scribl/releases/tag/v0.7.19","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/amberbiology/scribl@v0.7.19","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/amberbiology%2Fscribl/tags/v0.7.19","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/amberbiology%2Fscribl/tags/v0.7.19/manifests"},{"name":"v0.7.18","sha":"c536a08569d91fc61af5da10d3ea87c1c4650c9b","kind":"commit","published_at":"2025-08-18T04:03:37.000Z","download_url":"https://codeload.github.com/amberbiology/scribl/tar.gz/v0.7.18","html_url":"https://github.com/amberbiology/scribl/releases/tag/v0.7.18","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/amberbiology/scribl@v0.7.18","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/amberbiology%2Fscribl/tags/v0.7.18","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/amberbiology%2Fscribl/tags/v0.7.18/manifests"},{"name":"v0.8.2","sha":"aed9e0538567bbd339061a3a3bd90cc87e0aae9f","kind":"commit","published_at":"2025-01-30T04:10:09.000Z","download_url":"https://codeload.github.com/amberbiology/scribl/tar.gz/v0.8.2","html_url":"https://github.com/amberbiology/scribl/releases/tag/v0.8.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/amberbiology/scribl@v0.8.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/amberbiology%2Fscribl/tags/v0.8.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/amberbiology%2Fscribl/tags/v0.8.2/manifests"},{"name":"v0.8.1","sha":"85c6a532ea0b6619d03d2a1be0043cba9207de7b","kind":"commit","published_at":"2024-10-21T17:32:52.000Z","download_url":"https://codeload.github.com/amberbiology/scribl/tar.gz/v0.8.1","html_url":"https://github.com/amberbiology/scribl/releases/tag/v0.8.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/amberbiology/scribl@v0.8.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/amberbiology%2Fscribl/tags/v0.8.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/amberbiology%2Fscribl/tags/v0.8.1/manifests"},{"name":"v0.8.0","sha":"e08421463f64c23e2362047db455c5fd122dde48","kind":"commit","published_at":"2024-07-11T19:48:58.000Z","download_url":"https://codeload.github.com/amberbiology/scribl/tar.gz/v0.8.0","html_url":"https://github.com/amberbiology/scribl/releases/tag/v0.8.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/amberbiology/scribl@v0.8.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/amberbiology%2Fscribl/tags/v0.8.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/amberbiology%2Fscribl/tags/v0.8.0/manifests"},{"name":"v0.7.17","sha":"0cb773c8994aff7c9a3e6494719158c1fcd1ba1d","kind":"commit","published_at":"2024-07-08T19:03:30.000Z","download_url":"https://codeload.github.com/amberbiology/scribl/tar.gz/v0.7.17","html_url":"https://github.com/amberbiology/scribl/releases/tag/v0.7.17","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/amberbiology/scribl@v0.7.17","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/amberbiology%2Fscribl/tags/v0.7.17","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/amberbiology%2Fscribl/tags/v0.7.17/manifests"},{"name":"v0.7.16","sha":"8ebc78689af536d507aacec316ff8c38f2f6571e","kind":"commit","published_at":"2024-07-08T04:03:34.000Z","download_url":"https://codeload.github.com/amberbiology/scribl/tar.gz/v0.7.16","html_url":"https://github.com/amberbiology/scribl/releases/tag/v0.7.16","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/amberbiology/scribl@v0.7.16","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/amberbiology%2Fscribl/tags/v0.7.16","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/amberbiology%2Fscribl/tags/v0.7.16/manifests"},{"name":"v0.7.15","sha":"a07d08e60e302760ee6ce70c0eedb42c85c0e3c8","kind":"commit","published_at":"2024-07-08T03:54:07.000Z","download_url":"https://codeload.github.com/amberbiology/scribl/tar.gz/v0.7.15","html_url":"https://github.com/amberbiology/scribl/releases/tag/v0.7.15","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/amberbiology/scribl@v0.7.15","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/amberbiology%2Fscribl/tags/v0.7.15","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/amberbiology%2Fscribl/tags/v0.7.15/manifests"},{"name":"v0.8.0-a2","sha":"588eb9d91b1476f55bcb119a4276d8261defe26b","kind":"commit","published_at":"2024-07-02T06:00:31.000Z","download_url":"https://codeload.github.com/amberbiology/scribl/tar.gz/v0.8.0-a2","html_url":"https://github.com/amberbiology/scribl/releases/tag/v0.8.0-a2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/amberbiology/scribl@v0.8.0-a2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/amberbiology%2Fscribl/tags/v0.8.0-a2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/amberbiology%2Fscribl/tags/v0.8.0-a2/manifests"},{"name":"v0.7.14","sha":"e31e90e8a2fc4aa3b69ac494d72664fb418f82eb","kind":"commit","published_at":"2024-02-28T04:57:04.000Z","download_url":"https://codeload.github.com/amberbiology/scribl/tar.gz/v0.7.14","html_url":"https://github.com/amberbiology/scribl/releases/tag/v0.7.14","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/amberbiology/scribl@v0.7.14","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/amberbiology%2Fscribl/tags/v0.7.14","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/amberbiology%2Fscribl/tags/v0.7.14/manifests"},{"name":"v0.7.13","sha":"daf8bdb8083c5d8abdb6bcca7da0d4243c429751","kind":"commit","published_at":"2024-02-28T04:43:35.000Z","download_url":"https://codeload.github.com/amberbiology/scribl/tar.gz/v0.7.13","html_url":"https://github.com/amberbiology/scribl/releases/tag/v0.7.13","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/amberbiology/scribl@v0.7.13","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/amberbiology%2Fscribl/tags/v0.7.13","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/amberbiology%2Fscribl/tags/v0.7.13/manifests"},{"name":"v0.7.12","sha":"9f2942452d2121f1ca878380fccaadbfa5bc4679","kind":"commit","published_at":"2024-02-28T03:59:18.000Z","download_url":"https://codeload.github.com/amberbiology/scribl/tar.gz/v0.7.12","html_url":"https://github.com/amberbiology/scribl/releases/tag/v0.7.12","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/amberbiology/scribl@v0.7.12","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/amberbiology%2Fscribl/tags/v0.7.12","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/amberbiology%2Fscribl/tags/v0.7.12/manifests"},{"name":"v0.7.11","sha":"5d458cdb7b2c6d7dc4e1f1769de611082b99c57c","kind":"commit","published_at":"2023-12-27T03:46:08.000Z","download_url":"https://codeload.github.com/amberbiology/scribl/tar.gz/v0.7.11","html_url":"https://github.com/amberbiology/scribl/releases/tag/v0.7.11","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/amberbiology/scribl@v0.7.11","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/amberbiology%2Fscribl/tags/v0.7.11","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/amberbiology%2Fscribl/tags/v0.7.11/manifests"},{"name":"v0.7.10","sha":"470e391065d4384000beefc1310490bac7cdabea","kind":"commit","published_at":"2023-12-27T03:26:02.000Z","download_url":"https://codeload.github.com/amberbiology/scribl/tar.gz/v0.7.10","html_url":"https://github.com/amberbiology/scribl/releases/tag/v0.7.10","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/amberbiology/scribl@v0.7.10","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/amberbiology%2Fscribl/tags/v0.7.10","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/amberbiology%2Fscribl/tags/v0.7.10/manifests"},{"name":"v0.7.9","sha":"03a9b5e78ba0952e4f0c8a5b80b5682f3a8a7bf2","kind":"commit","published_at":"2023-12-27T03:01:13.000Z","download_url":"https://codeload.github.com/amberbiology/scribl/tar.gz/v0.7.9","html_url":"https://github.com/amberbiology/scribl/releases/tag/v0.7.9","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/amberbiology/scribl@v0.7.9","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/amberbiology%2Fscribl/tags/v0.7.9","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/amberbiology%2Fscribl/tags/v0.7.9/manifests"},{"name":"v0.8.0-a1","sha":"c1abd6c99691779afdb2121296d4fd5a88578456","kind":"commit","published_at":"2023-12-22T00:43:09.000Z","download_url":"https://codeload.github.com/amberbiology/scribl/tar.gz/v0.8.0-a1","html_url":"https://github.com/amberbiology/scribl/releases/tag/v0.8.0-a1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/amberbiology/scribl@v0.8.0-a1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/amberbiology%2Fscribl/tags/v0.8.0-a1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/amberbiology%2Fscribl/tags/v0.8.0-a1/manifests"}]},"repo_metadata_updated_at":"2026-06-07T16:01:25.742Z","dependent_packages_count":0,"downloads":246,"downloads_period":"last-month","dependent_repos_count":0,"rankings":{"downloads":null,"dependent_repos_count":60.06847853001699,"dependent_packages_count":10.666598358906052,"stargazers_count":null,"forks_count":null,"docker_downloads_count":null,"average":35.36753844446152},"purl":"pkg:pypi/scribl","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/pypi/scribl","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/pypi/scribl","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/pypi/scribl/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2026-05-26T05:41:51.459Z","issues_count":1,"pull_requests_count":173,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":85831.85064935064,"issues_closed_count":0,"pull_requests_closed_count":154,"pull_request_authors_count":4,"issue_authors_count":1,"avg_comments_per_issue":0.0,"avg_comments_per_pull_request":0.09248554913294797,"merged_pull_requests_count":147,"bot_issues_count":0,"bot_pull_requests_count":146,"past_year_issues_count":0,"past_year_pull_requests_count":66,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":124516.83636363636,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":55,"past_year_pull_request_authors_count":3,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":0.15151515151515152,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":65,"past_year_merged_pull_requests_count":52,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/amberbiology%2Fscribl/issues","maintainers":[{"login":"alexlancaster","count":25,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/alexlancaster"}],"active_maintainers":[{"login":"alexlancaster","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/alexlancaster"}]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/scribl/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/scribl/version_numbers","latest_version_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/scribl/latest_version","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/scribl/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/scribl/related_packages","codemeta_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/scribl/codemeta","maintainers":[{"uuid":"alexlanc","login":"alexlanc","name":null,"email":null,"url":null,"packages_count":2,"html_url":"https://pypi.org/user/alexlanc/","role":null,"created_at":"2024-07-08T05:26:28.771Z","updated_at":"2024-07-08T05:26:28.771Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers/alexlanc/packages"}],"registry":{"name":"pypi.org","url":"https://pypi.org","ecosystem":"pypi","default":true,"packages_count":889399,"maintainers_count":380928,"namespaces_count":0,"keywords_count":289179,"github":"pypi","metadata":{"funded_packages_count":54301},"icon_url":"https://github.com/pypi.png","created_at":"2022-04-04T15:19:23.364Z","updated_at":"2026-06-10T05:13:28.296Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/namespaces"}}],"commits":{"id":9624809,"full_name":"amberbiology/scribl","default_branch":"main","total_commits":201,"total_committers":5,"total_bot_commits":129,"total_bot_committers":2,"mean_commits":40.2,"dds":0.6467661691542288,"past_year_total_commits":109,"past_year_total_committers":5,"past_year_total_bot_commits":82,"past_year_total_bot_committers":2,"past_year_mean_commits":21.8,"past_year_dds":0.5871559633027523,"last_synced_at":"2026-06-15T20:02:47.135Z","last_synced_commit":"5da594a9b46a85ecb949e3088267e3a8c2318003","created_at":"2025-04-11T10:47:56.058Z","updated_at":"2026-06-15T20:02:14.872Z","committers":[{"name":"dependabot[bot]","email":"49699333+dependabot[bot]","login":"dependabot[bot]","count":71},{"name":"pre-commit-ci[bot]","email":"66853113+pre-commit-ci[bot]","login":"pre-commit-ci[bot]","count":58},{"name":"Alex Lancaster","email":"alexlancaster","login":"alexlancaster","count":53},{"name":"ci-scribl","email":"username","login":"username","count":10},{"name":"zenodraft/action","email":"","login":null,"count":9}],"past_year_committers":[{"name":"pre-commit-ci[bot]","email":"66853113+pre-commit-ci[bot]","login":"pre-commit-ci[bot]","count":45},{"name":"dependabot[bot]","email":"49699333+dependabot[bot]","login":"dependabot[bot]","count":37},{"name":"Alex Lancaster","email":"alexlancaster","login":"alexlancaster","count":15},{"name":"ci-scribl","email":"username","login":"username","count":6},{"name":"zenodraft/action","email":"","login":null,"count":6}],"commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/amberbiology%2Fscribl/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2026-06-19T00:00:07.604Z","repositories_count":6264097,"commits_count":875126120,"contributors_count":35079500,"owners_count":1168883,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues":{"table":{"full_name":"amberbiology/scribl","html_url":"https://github.com/amberbiology/scribl","last_synced_at":"2026-06-16T03:01:12.997Z","status":null,"issues_count":1,"pull_requests_count":177,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":84103.32278481012,"issues_closed_count":0,"pull_requests_closed_count":158,"pull_request_authors_count":4,"issue_authors_count":1,"avg_comments_per_issue":0.0,"avg_comments_per_pull_request":0.0903954802259887,"merged_pull_requests_count":151,"bot_issues_count":0,"bot_pull_requests_count":150,"past_year_issues_count":0,"past_year_pull_requests_count":63,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":71084.11111111111,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":54,"past_year_pull_request_authors_count":3,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":0.1111111111111111,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":62,"past_year_merged_pull_requests_count":52,"created_at":"2025-04-11T10:47:58.389Z","updated_at":"2026-06-16T03:01:12.998Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/amberbiology%2Fscribl","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/amberbiology%2Fscribl/issues","issue_labels_count":{"table":{}},"pull_request_labels_count":{"table":{"dependencies":92,"python":88,"skip-changelog":54,"github_actions":9,"documentation":7,"enhancement":6,"bug":6}},"issue_author_associations_count":{"table":{"NONE":1}},"pull_request_author_associations_count":{"table":{"CONTRIBUTOR":150,"MEMBER":25,"NONE":2}},"issue_authors":{"table":{"benlansdell":1}},"pull_request_authors":{"table":{"dependabot[bot]":91,"pre-commit-ci[bot]":59,"alexlancaster":25,"atrisovic":2}},"host":{"table":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2026-06-19T00:00:10.812Z","repositories_count":14815386,"issues_count":32996677,"pull_requests_count":108955482,"authors_count":11312033,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"}},"past_year_issue_labels_count":{"table":{}},"past_year_pull_request_labels_count":{"table":{"skip-changelog":30,"dependencies":27,"python":24,"github_actions":3,"documentation":1,"enhancement":1}},"past_year_issue_author_associations_count":{"table":{}},"past_year_pull_request_author_associations_count":{"table":{"CONTRIBUTOR":62,"MEMBER":1}},"past_year_issue_authors":{"table":{}},"past_year_pull_request_authors":{"table":{"pre-commit-ci[bot]":35,"dependabot[bot]":27,"alexlancaster":1}},"maintainers":[{"table":{"login":"alexlancaster","count":25,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/alexlancaster"}}],"active_maintainers":[{"table":{"login":"alexlancaster","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/alexlancaster"}}]}},"events":{"total":{"ReleaseEvent":7,"DeleteEvent":76,"PullRequestEvent":132,"WatchEvent":2,"IssueCommentEvent":9,"PushEvent":161,"PullRequestReviewEvent":52,"CreateEvent":82},"last_year":{"ReleaseEvent":4,"DeleteEvent":44,"PullRequestEvent":79,"WatchEvent":1,"IssueCommentEvent":9,"PushEvent":89,"PullRequestReviewEvent":29,"CreateEvent":54}},"keywords":["computational-biology","literature-mining","network-biology","systems-biology"],"dependencies":[{"ecosystem":"pypi","filepath":"pyproject.toml","sha":null,"kind":"manifest","created_at":"2023-12-27T01:40:56.278Z","updated_at":"2023-12-27T01:40:56.278Z","repository_link":"https://github.com/amberbiology/scribl/blob/main/pyproject.toml","dependencies":[{"id":15293575404,"package_name":"pyparsing","ecosystem":"pypi","requirements":"\u003c= 3.1.1","direct":true,"kind":"runtime","optional":false},{"id":15293575405,"package_name":"pandas","ecosystem":"pypi","requirements":"\u003c= 2.1.4","direct":true,"kind":"runtime","optional":false},{"id":15293575406,"package_name":"pyzotero","ecosystem":"pypi","requirements":"\u003c= 1.5.18","direct":true,"kind":"runtime","optional":false},{"id":15293575407,"package_name":"networkx","ecosystem":"pypi","requirements":"\u003c= 3.2.1","direct":true,"kind":"runtime","optional":false},{"id":15293575408,"package_name":"matplotlib","ecosystem":"pypi","requirements":"\u003c= 3.8.2","direct":true,"kind":"runtime","optional":false}]}],"score":8.728264161496178,"created_at":"2025-04-11T10:17:32.820Z","updated_at":"2026-06-20T22:30:25.495Z","avatar_url":"https://github.com/amberbiology.png","language":"Python","codemeta":null,"publiccode":null,"project_url":"https://summary.ecosyste.ms/api/v1/projects/356609","html_url":"https://summary.ecosyste.ms/projects/356609"}