Ecosyste.ms: Summary

https://github.com/roualdes/bridgestan

BridgeStan provides efficient in-memory access through Python, Julia, and R to the methods of a Stan model.

c cpp julia python r stan

Last synced: 22 Aug 2026

https://github.com/rempsyc/rempsyc/

Package of convenience functions to make your workflow faster and easier. Easily customizable plots (via ggplot2), nice APA tables exportable to Word (via flextable), easily run statistical tests or check assumptions, and automatize various other tasks.

convenience-functions ggplot2 psychology r rstats statistics visualization

Last synced: 22 Aug 2026

https://github.com/ralna/GALAHAD

A library of modern Fortran modules for nonlinear optimization

c cubic-regularization-methods fortran julia mathematical-programming matlab nonlinear-least-squares nonlinear-optimization numerical-optimization python quadratic-programming trust-region-methods

Last synced: 22 Aug 2026

https://github.com/auggiemarignier/pxmcmc

Solving inverse problems with Proximal Markov Chain Monte Carlo

bayesian-inference inverse-problems mcmc proximal-algorithms python

Last synced: 22 Aug 2026

https://github.com/ulissigroup/amptorch

AMPtorch: Atomistic Machine Learning Package (AMP) - PyTorch

Last synced: 22 Aug 2026

https://github.com/AI-multimodal/Lightshow

A one-stop-shop for handling data in computational spectroscopy

Last synced: 22 Aug 2026

https://github.com/bessagroup/CRATE

CRATE: Accurate and efficient clustering-based nonlinear analysis of heterogeneous materials through computational homogenization

clustering-analysis computational-homogenization computational-mechanics material-modelling

Last synced: 22 Aug 2026

https://github.com/RLado/ViMag

ViMag: A Visual Vibration Toolbox

condition-monitoring deep-learning modal-analysis motion-magnification structural-health-monitoring

Last synced: 22 Aug 2026

https://github.com/NEFSC/READ-PSB-LWT-narwss_rwsas_apps

Last synced: 22 Aug 2026

https://github.com/korem-lab/pymgpipe

Python implementation of mgpipe

cobra flux-balance-analysis metabolic-models metabolic-reconstruction mgpipe microbiome microbiome-modeling-toolbox modeling systems-biology

Last synced: 22 Aug 2026

https://github.com/souzamonteiro/cnatool

Complex Network Analysis Tool

Last synced: 22 Aug 2026

https://github.com/PetervanLunteren/AddaxAI

AI-assisted camera trap analysis: detection, species recognition, verification, dashboards and exports. Free, open source, for Windows, macOS and Linux.

cameratraps conservation-ai machine-learning-algorithms megadetector object-detection-model python3

Last synced: 22 Aug 2026

https://github.com/SeaIce-Math/SubZero

Discrete element sea ice model

Last synced: 22 Aug 2026

https://github.com/tldr-group/taufactor

TauFactor is a parallelised solver for calculating tortuosity factors from voxel data.

Last synced: 22 Aug 2026

https://github.com/pmlmodelling/nctoolkit

A Python package for netCDF analysis and post-processing

cdo netcdf python

Last synced: 22 Aug 2026

https://github.com/aymgal/COOLEST

Standard for strong gravitational lensing analyses

astrophysics gravitational-lensing lens-modeling standardization

Last synced: 22 Aug 2026

https://github.com/lucianolorenti/ceruleo

CeRULEo: Comprehensive utilitiEs for Remaining Useful Life Estimation methOds

predictive-maintenance remaining-useful-life remaining-useful-life-prediction time-series

Last synced: 22 Aug 2026

https://github.com/TRI-AMDD/GMP-featurizer/

Feature calculator for GMP features

Last synced: 22 Aug 2026

https://github.com/RTDLM/TDLM

📦 Systematic comparison of trip distribution laws and models

r r-package

Last synced: 22 Aug 2026

https://github.com/PyPO-dev/PyPO

📡 Open-source physical optics simulation package.

Last synced: 22 Aug 2026

https://github.com/BobAubouin/Python_Anesthesia_Simulator

Simulate the effect of drugs during total intrevenous anesthesia

anesthesia drug-dosage simulation

Last synced: 22 Aug 2026

https://github.com/frank1010111/bluebonnet/

Scaling solutions for production analysis from unconventional oil and gas wells

oil-and-gas petroleum-engineering python reservoir

Last synced: 22 Aug 2026

https://github.com/julianreul/mode_behave

A Python package for estimating mixed logit models with nonparametric distributions

Last synced: 22 Aug 2026

https://github.com/johentsch/ms3

A parser for annotated MuseScore 3 files.

corpus corpus-data corpus-generator corpus-processing corpus-tools musescore musescore2 musescore3 musescore4 music-score music-scores parser sheet-music sheet-music-parser tsv tsv-files tsv-format xml-parser xml-parser-library xml-parsing

Last synced: 22 Aug 2026

https://github.com/q1cui/discourseGT

discourseGT — Analyze Group Patterns using Graph Theory in Educational Settings

Last synced: 22 Aug 2026

https://github.com/sciris/sciris

Fast, flexible tools to simplify scientific Python

computational-science containers data-science matplotlib numpy parallelization plotting python scientific-computing utilities

Last synced: 22 Aug 2026

https://gitlab.com/chaver/choco-mining

Data mining with Choco solver

Association Rules Mining Choco solver Constraint Programming Pareto Skypattern data mining pattern mining

Last synced: 22 Aug 2026

https://github.com/JPenuchot/ctbench

Compiler-assisted variable size benchmarking for the study of C++ metaprogram compile times.

benchmark clang compilation data-analysis data-visualization gcc metaprogramming

Last synced: 22 Aug 2026

https://github.com/occupationMeasurement/occupationMeasurement

A package to help with the (interactive) coding and measurement of occupations

Last synced: 22 Aug 2026

https://github.com/snek5000/snek5000

:snake: Python framework for Nek5000 :rocket:

cfd closember fluiddyn fluidsim jinja2 nek5000 python simulation snakemake snek5000 workflow

Last synced: 22 Aug 2026

https://github.com/rikenbit/dcTensor

R package for Discrete Matrix/Tensor Decomposition

Last synced: 22 Aug 2026

https://github.com/ethicsai/ethical-smart-grid

Reinforcement learning environment for learning ethical behaviours in a SmartGrid use-case.

ai-ethics artificial-intelligence gym-environment machine-ethics python reinforcement-learning smart-grid

Last synced: 22 Aug 2026

https://github.com/geoelements/gns

Graph Network Simulator

deep-learning graph-network-simulator machine-learning pytorch

Last synced: 22 Aug 2026

https://github.com/MrShoenel/metrics-as-scores

Contains the data and scripts needed for the application Metrics as Scores

Last synced: 22 Aug 2026

https://github.com/leapigufpb/FuzzyClass/

fuzzy machine-learning package r

Last synced: 22 Aug 2026

https://github.com/upb-lea/ElectricGrid.jl

A time domain electrical energy grid modeling and simulation tool with a focus on the control of power electronics converters

Last synced: 22 Aug 2026

https://github.com/PieterjanRobbe/GaussianRandomFields.jl

A package for Gaussian random field generation in Julia

Last synced: 22 Aug 2026

https://github.com/martinfleis/clustergram

Clustergram - Visualization and diagnostics for cluster analysis in Python

Last synced: 22 Aug 2026

https://github.com/kanaverse/kana

Single cell analysis in the browser

bioinformatics cite-seq exploratory-data-analysis interactive-analysis interactive-visualizations rna-seq single-cell webassembly

Last synced: 22 Aug 2026

https://github.com/Degiacomi-Lab/molearn

protein conformational spaces meet machine learning

machine-learning molecular-dynamics molecular-modeling protein-structure

Last synced: 22 Aug 2026

https://github.com/miniufo/xinvert

Invert geophysical fluid dynamic problems (elliptic partial differential equations) using SOR iteration method.

atmospheric-science eliassen-model geophysical-fluid-dynamics gill-matsuno-model inversion-problem meteorology munk-stommel oceanography omega-equation poisson-equation pv-inversion streamfunction successive-over-relaxation velocity-potential wind-driven-circulation

Last synced: 22 Aug 2026

https://github.com/jbussemaker/SBArchOpt

Surrogate-Based Architecture Optimization toolbox

architecture multi-objective optimization sbo system

Last synced: 22 Aug 2026

https://github.com/palaeoware/revosim

REvoSim - The [R]apid [Evo]lutionary [Sim]ulator - An individual-based evolutionary model

Last synced: 22 Aug 2026

https://github.com/henrikdvn/CRSocket

Controller-Responder Socket

Last synced: 22 Aug 2026

https://github.com/NETL-RIC/URC-Assessment-Method

Tool for evaluating the potential occurrence of URC resources using a series of validated heuristics.

Last synced: 22 Aug 2026

https://github.com/fmicompbio/einprot

Proteomics analysis workflows

Last synced: 22 Aug 2026

https://github.com/DOE-NCI-MOSSAIC/FrESCO

Last synced: 22 Aug 2026

https://github.com/cumbof/hdlib

Hyperdimensional Computing Library for building Vector-Symbolic Architectures in Python 3

hyperdimensional-computing library machine-learning python vector-symbolic-architectures vectors

Last synced: 22 Aug 2026

https://github.com/bwheelz36/ParticlePhaseSpace

Import, analysis, and export of particle phase space data

accelerator-physics particles phase-space topas topas-mc twiss

Last synced: 22 Aug 2026

https://github.com/powerfulbean/mTRFpy

a python3 version of matlab mTRF-Toolbox by Lalor Lab https://mtrfpy.readthedocs.io/

eeg lalorlab python temporal-response-function

Last synced: 22 Aug 2026

https://github.com/Quantinuum/qujax

Simulating quantum circuits with JAX

jax python quantum

Last synced: 22 Aug 2026

https://github.com/auctus-team/pycapacity

An efficient task-space capacity calculation package for robotics and biomechanics

biomechanics linear-algebra pip-package polytope real-time robotics

Last synced: 22 Aug 2026

https://github.com/opengeos/segment-geospatial

A Python package for segmenting geospatial data with the Segment Anything Model (SAM)

artificial-intelligence deep-learning geopython geospatial machine-learning segment-anything segmentation

Last synced: 22 Aug 2026

https://github.com/APGG-Lab/APGG

A Modular Toolkit for Public Goods Game Computation

genetic-algorithm genetic-programming public-goods-game

Last synced: 22 Aug 2026

https://github.com/pnsaevik/effluent

Last synced: 22 Aug 2026

https://github.com/CMakePP/CMakePPLang/

Object-oriented extension to the CMake language.

cmake object-oriented-programming

Last synced: 22 Aug 2026

https://github.com/atzberg/mlmod

Machine learning package for data-driven modeling and simulation of particle systems, materials, and complex fluids (interfaces with LAMMPS MD package)

data-science machine-learning scientific-computation simulations

Last synced: 22 Aug 2026

https://gitlab.com/pythia-uq/pythia

PyThia Uncertainty Quantification Toolbox

Last synced: 22 Aug 2026

https://github.com/Sydney-Informatics-Hub/geodata-harvester

Jumpstart your geospatial analysis with a ready-made set of spatial-temporal aligned raster maps and data frames

Last synced: 22 Aug 2026

https://github.com/pysersic/pysersic

Bayesian fitting of Sersic profiles to galaxy images accelerated with jax

Last synced: 22 Aug 2026

https://github.com/SESMG/SESMG

Model generator for the optimization of energy systems, based on the modeling framework oemof. No programming skills are required to use it, as the parameters are entered using spreadsheets (e.g. Excel, LibreOffice).

Last synced: 22 Aug 2026

https://github.com/jacobblum/simDRIFT

simDRIFT - A software package for massively parallel forward simulation of Pulsed Gradient Spin Echo diffusion weighted MRI experiments on biophysically accurate tissue systems.

Last synced: 22 Aug 2026

https://github.com/bioAI-Oslo/Spikeometric

Spiking Neural Network Simulator based on Generalized Linear Models

Last synced: 22 Aug 2026

https://github.com/NatLabRockies/G2Aero

Separable shape tensors for aerodynamic design

Last synced: 22 Aug 2026

https://github.com/bayesflow-org/bayesflow

A Python library for efficient Bayesian modeling with deep learning

amortized-inference bayesian-statistics computational-modeling deep-learning generative-ai generative-models neural-networks simulation-based-inference

Last synced: 22 Aug 2026

https://github.com/arviz-devs/preliz

Exploring and eliciting probability distributions

bayesian-data-analysis bayesian-statistics prior-distribution prior-elicitation probability-distribution statistics

Last synced: 22 Aug 2026

https://github.com/yupidevs/pactus

Framework to evaluate Trajectory Classification Algorithms

classification classification-models evaluation-framework python trajectory trajectory-analysis transformers

Last synced: 22 Aug 2026

https://github.com/sunpy/ndcube

A base package for multi-dimensional contiguous and non-contiguous coordinate-aware arrays.

astropy nddata numfocus sunpy wcs

Last synced: 22 Aug 2026

https://github.com/thorek1/MacroModelling.jl

Macros and functions to work with DSGE models.

difference-equations dsge dynamic-programming dynamical-systems implicit-differentiation macroeconomics optimal-control perturbation

Last synced: 22 Aug 2026

https://github.com/JeremyGelb/geocmeans

An R package to perform Spatial Fuzzy C-means

clustering cmeans fuzzy-classification-algorithms r spatial-analysis spatial-fuzzy-cmeans unsupervised-learning

Last synced: 22 Aug 2026

https://github.com/bernadette-eu/Bernadette

Bayesian analysis of infectious disease transmission dynamics, with a particular focus on Coronavirus Disease 2019 (COVID-19)

Last synced: 22 Aug 2026

https://github.com/ifilot/bramble

Common Neighbor Analysis Tool

cna common-neighbor-analysis

Last synced: 22 Aug 2026

https://github.com/ExObsSim/ExoRad2-public

ExoRad, the generic point source radiometric model.

Last synced: 22 Aug 2026

https://github.com/mrsonandrade/pyswarming

A research toolkit for Swarm Robotics.

bioinspired engineering math mathematics multi-robot-systems pypi python python-toolkit research robot robotics self-organizing swarm swarm-intelligence swarm-robotics

Last synced: 22 Aug 2026

https://github.com/JuliaSmoothOptimizers/Krylov.jl

A Julia Basket of Hand-Picked Krylov Methods

julia julia-language krylov linear-algebra linear-systems optimization

Last synced: 22 Aug 2026

https://github.com/beniaminogreen/zoomerjoin

Superlatively-fast fuzzy-joins in R

blazinglyfast fuzzyjoin join r r-package rstats rust zoomer

Last synced: 22 Aug 2026

https://github.com/arnauqb/blackbirds

Black-Box Inference foR Differentiable Simulators

bayesian-inference differentiable-programming pytorch

Last synced: 22 Aug 2026

https://github.com/ropensci/concstats

Market Structure, Concentration, and Inequality Measures

business-analytics competition concentration diversity inequality package-development r r-package

Last synced: 22 Aug 2026

https://github.com/opensacorg/trash-ai

Web based trash image classification

Last synced: 22 Aug 2026

https://github.com/diningphil/PyDGN/

A research library for automating experiments on Deep Graph Networks

deep-graph-networks deep-learning-for-graphs evaluation-framework

Last synced: 22 Aug 2026

https://github.com/matthewcarbone/GGCE

Numerically exact Green's functions for lattice polaron models, easily and efficiently

greens-functions polarons quantum-mechanics spectroscopy

Last synced: 22 Aug 2026

https://github.com/uab-cgds-worthey/rosalution

Rosalution assists researchers study genetic variation 🧬 in patients 🧑🏾‍🤝‍🧑🏼 by helping select candidate animal models 🐀🐁🐠🪱 to replicate the variation to further research to derive, diagnose, and provide therapies for ultra-rare diseases. Developed by the UAB Center for Computational Genomics and Data Science (CGDS).

software

Last synced: 22 Aug 2026

https://github.com/LidkeLab/smite

Single Molecule Imaging Toolbox Extraordinaire

Last synced: 22 Aug 2026

https://github.com/TensorBFS/TensorInference.jl

Probabilistic inference using contraction of tensor networks

Last synced: 22 Aug 2026

https://github.com/eyra/port

[DEPRECATED] Scientific donation tool for digital trace data

Last synced: 22 Aug 2026

https://github.com/IceKhan13/purplecaffeine

Project is aimed to create simple general interface to track quantum experiments, store and search them in an easy way.

experiments qiskit quantum-computing tracking

Last synced: 22 Aug 2026

https://github.com/nomad-coe/greenX

Library for Green’s function based electronic structure theory calculations

exascale fortran greens-functions

Last synced: 22 Aug 2026

https://github.com/tobin-wainer/elk

This Repo is the python package ELK, making integrated light curves from TESS data

Last synced: 22 Aug 2026

https://github.com/UofUEpiBio/epiworldR

A general framework for quick epidemiological ABM models

abm agent-based-modeling covid-19 epidemics epidemiology r-package r-programming rpack rpkg seir seir-model simulation sir sir-model

Last synced: 22 Aug 2026

https://github.com/clreda/NORDic

Network-Oriented Repurposing of Drugs Python Package

bandit-algorithm boolean-network drug-repurposing drug-simulation gene-regulatory-network gene-regulatory-network-inference

Last synced: 22 Aug 2026

https://github.com/OceanBioME/OceanBioME.jl

🌊 🦠 🌿 A fast and flexible modelling environment written in Julia for modelling the coupled interactions between ocean biogeochemistry, carbonate chemistry, and physics

biogeochemical-models biogeochemistry climate julia ocean ocean-modelling ocean-sciences oceanography

Last synced: 22 Aug 2026

https://gitlab.com/bioeconomy/forobs/biotrade/

This package loads trade data on bio based commodities and products from the UN Comtrade and from FAOSTAT.

Last synced: 22 Aug 2026

https://github.com/braiNEdarwin/brains-py

A python package to support the study of Dopant Network Processing Units as hardware accelerators for non-linear operations. Its aim is to support key functions for hardware setups and algorithms related to searching functionality on DNPUs and DNPU architectures both in simulations and in hardware.

deep-learning dnpu dopant-network hardware

Last synced: 22 Aug 2026