https://github.com/tkchafin/FGTpartitioner
Parsimonious delimitation of large SNP datasets using the four gamete test
ancestry genome-alignment phylogenomics recombination
Last synced: 22 Aug 2026
https://github.com/ornlpmcp/ASCENDS
Advanced data SCiEnce toolkit for Non-Data scientists
Last synced: 22 Aug 2026
https://github.com/1313e/CMasher
Scientific colormaps for making accessible, informative and 'cmashing' plots
colormaps data-visualization matplotlib plotting python utility-functions
Last synced: 22 Aug 2026
https://github.com/titipata/pubmed_parser
:clipboard: A Python Parser for PubMed Open-Access XML Subset and MEDLINE XML Dataset
article doi medline-xml nlp parse parser pmid pubmed-central pubmed-parser python xml
Last synced: 22 Aug 2026
https://github.com/ybayle/Scyland3D
Scyland3D: Processing 3D landmarks
3d geometric-morphometric landmark landmark3d landmarks python semilandmark shape-analysis
Last synced: 22 Aug 2026
https://github.com/shalinshah1993/temporalDNAbarcodes
A MATLAB suite implementing computer vision pipeline to extract information from the noisy TIRF microscopy data (image stack)
dna-barcode fluorescence-microscopy-imaging matlab-functions single-molecule-imaging temporal-dna-barcodes tirf
Last synced: 22 Aug 2026
https://github.com/FEST3D/FEST-3D
The source code for Finite volume Explicit STructured 3Dimensional (FEST-3D) solver.
Last synced: 22 Aug 2026
https://github.com/joshday/OnlineStats.jl
⚡ Single-pass algorithms for statistics
big-data julia julia-language julialang online-algorithms onlinestats statistics stochastic-approximation streaming-data
Last synced: 22 Aug 2026
https://github.com/sunpy/sunpy
SunPy - Python for Solar Physics
astronomy astropy hacktoberfest python solar solar-physics sun sunpy
Last synced: 22 Aug 2026
https://github.com/ropensci-archive/Rclean
:warning: ARCHIVED :warning: Isolate essential code to re-produce specific results.
Last synced: 22 Aug 2026
https://github.com/akashnag/MDL-Suite
A package for generating mazes and compiling maze descriptions to images and code
Last synced: 22 Aug 2026
https://github.com/artivis/manif
A small C++11 header-only library for Lie theory.
2d 3d c-plus-plus computer-vision cpp11 geometry header-only lie-groups lie-theory python3 robotics slam state-estimation
Last synced: 22 Aug 2026
https://github.com/tresoldi/dafsa
Library for computing Deterministic Acyclic Finite State Automata (DAFSA)
Last synced: 22 Aug 2026
https://github.com/JuliaText/WordTokenizers.jl/
High performance tokenizers for natural language processing and other related tasks
data-mining information-retrieval lexer nlp tokenization
Last synced: 22 Aug 2026
https://github.com/kirui93/ScenTrees.jl
Julia Package for Generating Scenario Trees and Scenario Lattices for Multistage Stochastic Optimization
julia multistage-stochastic-optimization scenario-lattice scenario-tree scenario-tree-generation stochastic-data stochastic-processes
Last synced: 22 Aug 2026
https://github.com/pachadotdev/economiccomplexity
A wrapper of different indices and networks commonly used in Economic Complexity
economic-complexity eigenvalues eigenvectors graphs international-trade matrix networks r recursive-algorithm
Last synced: 22 Aug 2026
https://github.com/NeuroDiffGym/neurodiffeq
A library for solving differential equations using neural networks based on PyTorch, used by multiple research groups around the world, including at Harvard IACS.
artificial-intelligence boundary-value-problem deep-learning differential-equations initial-value-problem mathematical-modelling neural-networks ode odes pde-solver physics-informed-neural-networks pinn pypi pytorch scientific-computing time-series
Last synced: 22 Aug 2026
https://github.com/AndrewAnnex/SpiceyPy
SpiceyPy: a Pythonic Wrapper for the SPICE Toolkit.
ephemeris nasa navigation python space spice toolkit
Last synced: 22 Aug 2026
https://github.com/callat-qcd/espressodb
Science database interface using Django as the content manager.
Last synced: 22 Aug 2026
https://github.com/PhilBoileau/scPCA
A toolbox for sparse contrastive principal component analysis
bioconductor contrastive-learning dimensionality-reduction
Last synced: 22 Aug 2026
https://github.com/IBM/complex-linear-network-analyzer
Computes analytically the output of complex valued, linear networks.
Last synced: 22 Aug 2026
https://github.com/CountESS-Project/fqfa/
A lightweight Python library for handling FASTQ and FASTA files.
Last synced: 22 Aug 2026
https://github.com/glm-tools/pyglmnet/
Python implementation of elastic-net regularized generalized linear models
data-science elastic-net glm lasso machine-learning python
Last synced: 22 Aug 2026
https://github.com/UNCG-DAISY/psi-collect
Collect Post-Storm Imagery from NOAA
coastal hurricane imagery noaa storms
Last synced: 22 Aug 2026
https://github.com/underworldcode/underworld2
underworld2: A parallel, particle-in-cell, finite element code for Geodynamics.
auscope docker finite-element-methods geodynamics hacktoberfest hacktoberfest2020 hacktoberfest2021 particle-in-cell petsc python underworld
Last synced: 22 Aug 2026
https://github.com/telatin/covtobed/
⛰ covtobed | Convert the coverage track from a BAM file into a BED file
alignments bam-files bed bioconda bioinformatics bioinformatics-tool sequence-coverage
Last synced: 22 Aug 2026
https://github.com/ThomasPak/pakman
A modular, efficient and portable tool for running parallel approximate Bayesian computation algorithms.
Last synced: 22 Aug 2026
https://github.com/bmorris3/fleck
Fast approximate spectrophotometry of active stars (plus planets!)
Last synced: 22 Aug 2026
https://github.com/madvn/infotheory
C++/Python Information theoretic analyses tools
entropy information-theory mutual-information partial-information-decomposition
Last synced: 22 Aug 2026
https://github.com/TRI-AMDD/materialnet
Visualization for TRI materials network data
Last synced: 22 Aug 2026
https://github.com/WMD-group/CarrierCapture.jl
Julia package to compute trap-assisted electron and hole capture in semiconductors
defects electronic-structure materials-design semiconductors solar-cells
Last synced: 22 Aug 2026
https://github.com/Chaste/Chaste
Chaste - Cancer Heart And Soft Tissue Environment - main public repository.
c-plus-plus cancer-research cell-based computational-biology developmental-biology electrophysiology hpc-applications mathematical-biology mathematical-modelling physiology
Last synced: 22 Aug 2026
https://github.com/anowacki/SeisModels.jl
Seismic models of the interior of the Earth and other planets
earth geophysics julia seismology
Last synced: 22 Aug 2026
https://github.com/USCbiostats/partition
A fast and flexible framework for data reduction in R
data-reduction dimensionality-reduction partitional-clustering r
Last synced: 22 Aug 2026
https://github.com/quinngroup/ornet
Organellar segmentation, tracking, and network modeling.
Last synced: 22 Aug 2026
https://github.com/metaisbeta/asniffer
Tool to extract Code Annotations Metrics
Last synced: 22 Aug 2026
https://github.com/pySRURGS/pyGOURGS
Global optimization by uniform random global search
enumeration genetic-programming global-optimization random-search tree-structure
Last synced: 22 Aug 2026
https://github.com/pysal/splot
Lightweight plotting for geospatial analysis in PySAL
Last synced: 22 Aug 2026
https://github.com/UW-Hydro/MetSim
Meteorology Simulator
climate disaggregation hydrology meteorology mtclim
Last synced: 22 Aug 2026
https://github.com/Sage-Bionetworks/mhealthtools
A modular R package for extracting features from mobile sensor data
Last synced: 22 Aug 2026
https://github.com/hema-ted/pyzfs
A python package to compute zero-field-splitting tensors for molecules and spin quantum bits in semiconductors.
defects density-functional-theory materials-science quantum-information spin
Last synced: 22 Aug 2026
https://github.com/pyReef-model/RADWave
A Python interface to perform wave analysis from satellite altimeter data
Last synced: 22 Aug 2026
https://github.com/shah314/graphcoloring
JCOL: A Java package for solving the graph coloring problem (a heuristic)
backtracking dsatur graph-coloring heuristic heuristic-algorithm iterated-greedy java local-search
Last synced: 22 Aug 2026
https://github.com/zwicker-group/py-pde
Python package for solving partial differential equations using finite differences.
dynamical-systems finite-difference-method partial-differential-equations pdes python scientific-computing
Last synced: 22 Aug 2026
https://github.com/petrobras/ross
ROSS is a library written in Python for rotordynamic analysis.
Last synced: 22 Aug 2026
https://github.com/dylan-profiler/visions
Type System for Data Analysis in Python
data-analysis data-science hacktoberfest numpy pandas python spark type-inference type-system
Last synced: 22 Aug 2026
https://github.com/abel-research/ampscan
ampscan is an open-source Python package for analysis and visualisation of digitised surface scan data, specifically for applications within Prosthetics and Orthotics (P&O), with an aim to improve evidence-based clinical practice towards improved patient outcomes.
3d-models 3d-scanning numpy prosthetics python southampton visualisation vtk
Last synced: 22 Aug 2026
https://github.com/thesketh/pygen-structures
3D molecular structure generation for MD simulation
Last synced: 22 Aug 2026
https://github.com/simonom/PyCHAM
PyCHAM: CHemistry with Aerosol Microphysics in Python box model for Windows, Linux and Mac
aerosol-chambers aerosol-microphysics atmospheric-modelling chemical-scheme indoor-air-quality scipy
Last synced: 22 Aug 2026
https://github.com/daffidwilde/matching
A package for solving matching games
gale-shapley game-theory hospital-residents matching-game matching-problems stable-marriage
Last synced: 22 Aug 2026
https://github.com/nkarasiak/MuseoToolBox
MuseoToolBox : a python library for remote sensing scripts
Last synced: 22 Aug 2026
https://github.com/thelfer/MFrontGenericInterfaceSupport
This project aims at providing support for MFront generic behaviours. This project can be embedded in open-source and propriary sofware
Last synced: 22 Aug 2026
https://github.com/Nicolas-Schmidt/BayesMFSurv
Bayesian Misclassified-Failure Survival Model
misclassified-failure-estimates survival
Last synced: 22 Aug 2026
https://github.com/jspaezp/sctree
Tree based marker finding and gating visualization for single cell rna seq data
Last synced: 22 Aug 2026
https://github.com/mmrabe/hypr
hypr is an R package for easy translation between experimental (null) hypotheses and contrast matrices as used for linear regression.
Last synced: 22 Aug 2026
https://github.com/johannes-titz/mimosa
The mixed model special agent
hierarchical-linear-models hlm linear mimosa mixed mixed-models model multi-level-model
Last synced: 22 Aug 2026
https://github.com/pmcharrison/psychTestR
psychTestR - an R package for developing behavioural experiments
Last synced: 22 Aug 2026
https://github.com/matrix-profile-foundation/joss_paper
Content for JOSS submission
Last synced: 22 Aug 2026
https://github.com/ryanpmcg/WEPPCLIFF
An R-based command line tool designed to prepare climate inputs for WEPP, which has been extended to perform other general functions such as quality checking, gap filling, and erosion index calculations (climate inputs for USLE family models).
Last synced: 22 Aug 2026
https://github.com/babinyurii/recan
genetic distance plotting for recombination events analysis
alignment bioinformatics distance-plots dna-recombination genetic-distances python recombination-events virology
Last synced: 22 Aug 2026
https://github.com/noraeisner/LATTE
Lightcurve Analysis Tool for Transiting Exoplanet
Last synced: 22 Aug 2026
https://github.com/fat-forensics/fat-forensics
Modular Python Toolbox for Fairness, Accountability and Transparency Forensics
accountability explainability explainable-ai fairness interpretability interpretable-ai machine-learning transparency
Last synced: 22 Aug 2026
https://github.com/corybrunson/ggalluvial
ggplot2 extension for alluvial plots
alluvial-diagrams alluvial-plots categorical-data-visualization ggplot2 r repeated-measures-data
Last synced: 22 Aug 2026
https://github.com/torressa/cspy
A collection of algorithms for the (Resource) Constrained Shortest Path problem in Python / C++ / C#
bidirectional-labeling-algorithm csp-problem operations-research optimization optimization-algorithms optimization-library resource-constrained-shortest-path
Last synced: 22 Aug 2026
https://github.com/oemof/tespy
Thermal Engineering Systems in Python (TESPy). This package provides a powerful simulation toolkit for thermodynamic modeling of thermal engineering plants such as power plants, heat pumps or refrigeration machines.
cooling energy-system exergy heating powerplant process-engineering python refrigeration simulation thermodynamic-cycles thermodynamics
Last synced: 22 Aug 2026
https://github.com/DeepRank/pdb2sql
Fast and versatile biomolecular structure PDB file parser using SQL queries
Last synced: 22 Aug 2026
https://github.com/joaomcteixeira/taurenmd
A command-line interface for analysis of Molecular Dynamics simulations.
Last synced: 22 Aug 2026
https://github.com/arm61/uravu
A straightforward Bayesian data fitting library
bayesian-inference bayesian-statistics data-analysis fitting markov-chain-monte-carlo nested-sampling
Last synced: 22 Aug 2026
https://github.com/samuelduchesne/archetypal
archetypal: Retrieve, construct, simulate, convert and analyse building simulation templates
archetypes buildings energy-simulation energyplus energyplus-models python simulation-templates umi umi-template visualization
Last synced: 22 Aug 2026
https://github.com/MariaTsantaki/FASMA-synthesis
Python code for stellar spectral analysis
Last synced: 22 Aug 2026
https://github.com/gap-packages/RepnDecomp
Decompose representations of finite groups into irreducibles
group-theory representation-theory
Last synced: 22 Aug 2026
https://github.com/teb-model/teb
🏘️ The Town Energy Balance (TEB) model software and platform
atmospheric-modelling building-energy cmake energy-balance-model energy-consumption energy-model energy-simulation environmental-modelling forecasting-model land-surface-model meteorology teb town-energy-balance urban-energy-budget urban-meteorology urban-planning
Last synced: 22 Aug 2026
https://github.com/NatLabRockies/bifacial_radiance
Toolkit for working with RADIANCE for the ray-trace modeling of Bifacial Photovoltaics
bifacial gui photovoltaics radiance renewable-energy renewables
Last synced: 22 Aug 2026
https://github.com/anmolter/XLUR
A Python toolbox for ArcGIS Pro that enables the development and application of land use regression models.
arcgis lur python-toolbox
Last synced: 22 Aug 2026
https://github.com/KVSlab/turtleFSI
Monolithic Fluid-Structure Interaction (FSI) solver
fenics fluid-structure-interaction python
Last synced: 22 Aug 2026
https://github.com/mzy2240/ESA
Easy SimAuto (ESA): An easy-to-use Power System Analysis Automation Environment atop PowerWorld Simulator Automation Server (SimAuto)
automation contingency-analysis esa graph-analysis hpc numba numpy pandas power-flow powersystem powerworld powerworld-simulator python pythran simauto simulator simulator-automation-server smart-grid transient-stability
Last synced: 22 Aug 2026
https://github.com/drostlab/LTRpred
De novo annotation of young retrotransposons
diversification evolution genome ltr ltr-retrotransposons ltr-transposons pipeline
Last synced: 22 Aug 2026
https://github.com/coljac/sensie
Toolset for probing the sensitivity of a deep neural network model to various properties of the data.
Last synced: 22 Aug 2026
https://github.com/rgmyr/corebreakout
Segmentation and depth-alignment of geological core sample image columns via Mask-RCNN
Last synced: 22 Aug 2026
https://github.com/BartoszBartmanski/StoSpa2
A C++ software package for stochastic simulations of spatially extended systems
Last synced: 22 Aug 2026
https://github.com/Alcampopiano/hypothesize
Robust statistics in Python
confidence-intervals data-analysis hypothesis-testing null-hypothesis python r robust-statistics significance-testing statistics stats
Last synced: 22 Aug 2026
https://github.com/samhforbes/PupillometryR
An R package for preparing and analysing pupillometry data
Last synced: 22 Aug 2026
https://github.com/LiberTEM/LiberTEM
Open pixelated STEM framework
data-processing electron-microscopy image-processing python
Last synced: 22 Aug 2026
https://github.com/sam-greenwood/taco_vis
Python package for visualising torsional oscillations
Last synced: 22 Aug 2026
https://github.com/grf-labs/policytree
Policy learning via doubly robust empirical welfare maximization over trees
causal-inference policy-learning
Last synced: 22 Aug 2026
https://github.com/deezer/spleeter
Deezer source separation library including pretrained models.
audio-processing bass deep-learning deezer drums model pretrained-models python tensorflow vocals
Last synced: 22 Aug 2026
https://github.com/martibosch/detectree
Tree detection from aerial imagery in Python
image-segmentation python remote-sensing tree-canopy tree-detection tree-pixels
Last synced: 22 Aug 2026
