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JOSS: https://github.com/drostlab/LTRpred

diversification evolution genome ltr ltr-retrotransposons ltr-transposons pipeline

Score: 5.049856007249537

Last synced: about 4 hours ago
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Repository metadata:

De novo annotation of young retrotransposons


Owner metadata:


GitHub Events

Total
Last Year

Committers metadata

Last synced: about 2 months ago

Total Commits: 1,094
Total Committers: 3
Avg Commits per committer: 364.667
Development Distribution Score (DDS): 0.003

Commits in past year: 2
Committers in past year: 1
Avg Commits per committer in past year: 2.0
Development Distribution Score (DDS) in past year: 0.0

Name Email Commits
HajkD h****t@g****m 1091
Hajk-Georg Drost h****t@a****l 2
Arfon Smith a****n 1

Issue and Pull Request metadata

Last synced: 10 months ago


Dependencies

DESCRIPTION cran
  • R >= 3.1.1 depends
  • BSDA * imports
  • Biostrings * imports
  • GenomeInfoDb * imports
  • GenomicRanges * imports
  • IRanges * imports
  • R.utils * imports
  • RColorBrewer * imports
  • ape * imports
  • biomartr >= 0.5.1 imports
  • downloader * imports
  • dplyr >= 0.3.0.2 imports
  • ggplot2 * imports
  • ggrepel * imports
  • gridExtra * imports
  • magrittr * imports
  • methods * imports
  • parallel >= 3.0.2 imports
  • readr * imports
  • reshape2 * imports
  • scales * imports
  • stringr >= 0.6.2 imports
  • tibble * imports
  • amap * suggests
  • devtools >= 1.6.1 suggests
  • ggbio * suggests
  • ggsci * suggests
  • knitr >= 1.6 suggests
  • rmarkdown >= 0.3.3 suggests
  • roxygen2 * suggests
  • testthat >= 0.9.1 suggests