JOSS: https://github.com/PhilBoileau/scPCA
bioconductor contrastive-learning dimensionality-reduction
Score: 4.356708826689592
Last synced: about 5 hours ago
JSON representation
Repository metadata:
A toolbox for sparse contrastive principal component analysis
- Host: GitHub
- URL: https://github.com/PhilBoileau/scPCA
- Owner: PhilBoileau
- License: other
- Created: 2019-03-25T23:52:40.000Z (about 7 years ago)
- Default Branch: master
- Last Pushed: 2025-02-10T18:05:19.000Z (over 1 year ago)
- Last Synced: 2026-06-12T18:06:33.350Z (10 days ago)
- Topics: bioconductor, contrastive-learning, dimensionality-reduction
- Language: R
- Homepage: https://bioconductor.org/packages/release/bioc/html/scPCA.html
- Size: 4.52 MB
- Stars: 12
- Watchers: 4
- Forks: 1
- Open Issues: 1
-
Metadata Files:
- Readme: README.Rmd
- Changelog: NEWS.md
- Contributing: CONTRIBUTING.md
- License: LICENSE
Owner metadata:
- Name: Philippe Boileau
- Login: PhilBoileau
- Email:
- Kind: user
- Description: PhD candidate in biostatistics at UC Berkeley
- Website: pboileau.ca
- Location: Berkeley, CA
- Twitter: p_boileau
- Company:
- Icon url: https://avatars.githubusercontent.com/u/8812813?u=8bcfa21533653dafe022d6eaffcb5825f55cc4c0&v=4
- Repositories: 7
- Last Synced at: 2023-03-05T22:08:55.987Z
- Profile URL: https://github.com/PhilBoileau
GitHub Events
Total
- Create event: 1
- Delete event: 1
- Issue comment event: 1
- Issues event: 1
- Pull request event: 2
- Push event: 3
- Total: 9
Last Year
- Total: 0
Committers metadata
Last synced: 2 days ago
Total Commits: 324
Total Committers: 6
Avg Commits per committer: 54.0
Development Distribution Score (DDS): 0.238
Commits in past year: 0
Committers in past year: 0
Avg Commits per committer in past year: 0.0
Development Distribution Score (DDS) in past year: 0.0
| Name | Commits | |
|---|---|---|
| Philippe Boileau | p****m@g****m | 247 |
| Nima Hejazi | n****h@n****g | 52 |
| Nitesh Turaga | n****a@g****m | 12 |
| J Wokaty | j****y@s****u | 10 |
| Sandrine Dudoit | s****e@s****u | 2 |
| Fabian Scheipl | f****l@g****m | 1 |
Issue and Pull Request metadata
Last synced: 4 months ago
Total issues: 25
Total pull requests: 39
Average time to close issues: about 1 month
Average time to close pull requests: about 13 hours
Total issue authors: 8
Total pull request authors: 3
Average comments per issue: 1.96
Average comments per pull request: 0.28
Merged pull request: 39
Bot issues: 0
Bot pull requests: 0
Past year issues: 0
Past year pull requests: 2
Past year average time to close issues: N/A
Past year average time to close pull requests: 1 minute
Past year issue authors: 0
Past year pull request authors: 1
Past year average comments per issue: 0
Past year average comments per pull request: 0.0
Past year merged pull request: 2
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- PhilBoileau (10)
- LTLA (8)
- nhejazi (2)
- adigorla (1)
- chisin (1)
- PietroD (1)
- fabian-s (1)
- klai001 (1)
Top Pull Request Authors
- PhilBoileau (28)
- nhejazi (11)
- fabian-s (1)
Top Issue Labels
- enhancement (7)
- bug (2)
- not an issue (1)
Top Pull Request Labels
- enhancement (2)
Package metadata
- Total packages: 3
- Total downloads: unknown
- Total dependent packages: 0 (may contain duplicates)
- Total dependent repositories: 0 (may contain duplicates)
- Total versions: 9
- Total maintainers: 1
proxy.golang.org: github.com/PhilBoileau/scPCA
- Homepage:
- Documentation: https://pkg.go.dev/github.com/PhilBoileau/scPCA#section-documentation
- Licenses: other
- Latest release: v1.1.10 (published over 6 years ago)
- Last Synced: 2026-06-20T22:00:28.672Z (2 days ago)
- Versions: 1
- Dependent Packages: 0
- Dependent Repositories: 0
-
Rankings:
- Dependent packages count: 6.521%
- Average: 6.74%
- Dependent repos count: 6.959%
proxy.golang.org: github.com/philboileau/scpca
- Homepage:
- Documentation: https://pkg.go.dev/github.com/philboileau/scpca#section-documentation
- Licenses: other
- Latest release: v1.1.10 (published over 6 years ago)
- Last Synced: 2026-06-20T22:00:30.572Z (2 days ago)
- Versions: 1
- Dependent Packages: 0
- Dependent Repositories: 0
-
Rankings:
- Dependent packages count: 6.521%
- Average: 6.74%
- Dependent repos count: 6.959%
bioconductor.org: scPCA
Sparse Contrastive Principal Component Analysis
- Homepage: https://github.com/PhilBoileau/scPCA
- Documentation: https://bioconductor.org/packages/release/bioc/vignettes/scPCA/inst/doc/scPCA.pdf
- Licenses: MIT + file LICENSE
- Latest release: 1.26.0 (published about 2 months ago)
- Last Synced: 2026-06-20T22:00:27.686Z (2 days ago)
- Versions: 7
- Dependent Packages: 0
- Dependent Repositories: 0
-
Rankings:
- Dependent repos count: 0.0%
- Dependent packages count: 0.0%
- Average: 22.99%
- Downloads: 68.969%
- Maintainers (1)
Dependencies
- R >= 4.0.0 depends
- BiocParallel * imports
- DelayedArray * imports
- Matrix * imports
- MatrixGenerics * imports
- RSpectra * imports
- Rdpack * imports
- ScaledMatrix * imports
- assertthat * imports
- cluster * imports
- coop * imports
- dplyr * imports
- elasticnet * imports
- kernlab * imports
- matrixStats * imports
- methods * imports
- origami * imports
- purrr * imports
- sparsepca * imports
- stats * imports
- stringr * imports
- tibble * imports
- BiocStyle * suggests
- DelayedMatrixStats * suggests
- SingleCellExperiment * suggests
- covr * suggests
- ggplot2 * suggests
- ggpubr * suggests
- knitr * suggests
- microbenchmark * suggests
- rmarkdown * suggests
- sparseMatrixStats * suggests
- splatter * suggests
- testthat >= 2.1.0 suggests