Collections: pyOpenSci
https://github.com/JonnyTran/OpenOmics
A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.
data-integration data-manipulation genomics multi-omics python
Last synced: 01 Nov 2026
Keywords
python
8
graph-analysis
2
schema
1
testing
1
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1
validation
1
biology-images
1
computer-vision
1
ecology
1
evolution
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image-analysis
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image-processing
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phenomics
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phenotyping
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ai
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data-science
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machine-learning
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ml
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sampling
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complex-networks
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higher-order
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higher-order-networks
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hypergraphs
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network-science
1
simplicial-complexes
1
assertions
1
data-assertions
1
data-check
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data-cleaning
1
data-processing
1
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dongdong tian
1,582
jonny tran
1,040
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964
jonnytran
904
martha kandziora
879
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805
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665
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652
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89
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Direct Dependencies
pypi:numpy
12
pypi:pandas
11
actions:actions/setup-python
10
actions:actions/checkout
10
actions:pypa/gh-action-pypi-publish
8
pypi:scipy
7
pypi:matplotlib
7
pypi:pytest
7
actions:codecov/codecov-action
7
pypi:pytest-cov
6
actions:actions/upload-artifact
5
pypi:coverage
5
conda:pytest-cov
4
pypi:sphinx-rtd-theme
4
pypi:sphinx
4
actions:actions/cache
4
conda:pandas
4
pypi:ipykernel
3
pypi:nbsphinx
3
conda:pytest
3
pypi:pyyaml
3
pypi:pip
3
conda:numpy
3
conda:black
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conda:geopandas
3
pypi:twine
3
pypi:tox
3
pypi:jupyter
3
conda:packaging
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pypi:networkx
3
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