pyOpenSci: https://github.com/JonnyTran/OpenOmics
data-integration data-manipulation genomics multi-omics python
Score: 6.5624440936937205
Last synced: about 2 hours ago
JSON representation
Repository metadata:
A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.
- Host: GitHub
- URL: https://github.com/JonnyTran/OpenOmics
- Owner: JonnyTran
- License: mit
- Created: 2018-03-16T17:35:27.000Z (almost 8 years ago)
- Default Branch: master
- Last Pushed: 2024-07-10T04:44:40.000Z (over 1 year ago)
- Last Synced: 2026-01-20T15:50:26.699Z (15 days ago)
- Topics: data-integration, data-manipulation, genomics, multi-omics, python
- Language: Python
- Homepage: https://openomics.readthedocs.io/en/latest/
- Size: 68.5 MB
- Stars: 36
- Watchers: 4
- Forks: 11
- Open Issues: 23
-
Metadata Files:
- Readme: README.md
- Contributing: docs/contributing.md
- License: LICENSE
- Citation: CITATION.cff
Owner metadata:
- Name: Nhat (Jonny) Tran
- Login: JonnyTran
- Email:
- Kind: user
- Description: Graph neural networks, bioinformatics, and ML engineering for all things NLP, RNA/protein sequence learning, and knowledge graphs. Work GH: @JTran-IDM
- Website: jonny.bio
- Location:
- Twitter: Jonny_Wireless
- Company:
- Icon url: https://avatars.githubusercontent.com/u/4750391?u=6b93a8167ee6333a9825cedfd435431044456eea&v=4
- Repositories: 41
- Last Synced at: 2024-04-30T09:26:15.927Z
- Profile URL: https://github.com/JonnyTran
GitHub Events
Total
- Watch event: 2
- Total: 2
Last Year
- Watch event: 1
- Total: 1
Committers metadata
Last synced: 12 days ago
Total Commits: 2,002
Total Committers: 12
Avg Commits per committer: 166.833
Development Distribution Score (DDS): 0.481
Commits in past year: 0
Committers in past year: 0
Avg Commits per committer in past year: 0.0
Development Distribution Score (DDS) in past year: 0.0
| Name | Commits | |
|---|---|---|
| Jonny Tran | n****n@m****u | 1040 |
| JonnyTran | J****n@g****m | 704 |
| JonnyTran | j****n@g****m | 123 |
| JonnyTran | D****9 | 77 |
| pyup-bot | g****t@p****o | 22 |
| sdhutchins | s****s@u****u | 12 |
| deepsource-autofix[bot] | 6****] | 12 |
| snyk-bot | s****t@s****o | 6 |
| Arfon Smith | a****n | 2 |
| t-silvers | s****s@m****e | 2 |
| Steve Moss | g****l@g****m | 1 |
| DeepSource Bot | b****t@d****o | 1 |
Issue and Pull Request metadata
Last synced: 5 months ago
Total issues: 16
Total pull requests: 115
Average time to close issues: 6 days
Average time to close pull requests: 8 days
Total issue authors: 8
Total pull request authors: 8
Average comments per issue: 2.81
Average comments per pull request: 0.06
Merged pull request: 26
Bot issues: 0
Bot pull requests: 51
Past year issues: 0
Past year pull requests: 0
Past year average time to close issues: N/A
Past year average time to close pull requests: N/A
Past year issue authors: 0
Past year pull request authors: 0
Past year average comments per issue: 0
Past year average comments per pull request: 0
Past year merged pull request: 0
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- JonnyTran (6)
- ksielemann (3)
- sdhutchins (1)
- jamesbraza (1)
- Rana-Sabrii (1)
- piyushm27 (1)
- gawbul (1)
- pyup-bot (1)
Top Pull Request Authors
- deepsource-autofix[bot] (51)
- JonnyTran (38)
- pyup-bot (27)
- snyk-bot (2)
- sdhutchins (2)
- gawbul (2)
- t-silvers (1)
- arfon (1)
Top Issue Labels
- pyopensci-review (6)
- help wanted (2)
- enhancement (1)
- doc (1)
Top Pull Request Labels
- doc (13)
Dependencies
- astropy *
- biopython *
- bioservices *
- bokeh *
- dash *
- dash-bootstrap-components *
- dash-daq *
- dask *
- filetype *
- goatools *
- gtfparse *
- gunicorn *
- h5py *
- itsdangerous *
- matplotlib *
- networkx *
- numpy *
- obonet *
- pandas *
- rarfile *
- scipy *
- six *
- sqlalchemy *
- typing *
- validators *
- actions/cache v2 composite
- actions/checkout v2 composite
- actions/setup-python v2 composite
- codecov/codecov-action v1 composite
- Sphinx *
- bumpversion *
- coverage *
- flake8 *
- furo *
- graphviz *
- myst-parser *
- pip *
- pytest >=7.0.0
- pytest-cov *
- pytest-runner *
- ruamel.yaml *
- sphinx-autobuild *
- sphinx-automodapi *
- sphinx-copybutton *
- sphinx-inline-tabs *
- sphinx_autodoc_typehints *
- tornado >=6.3.3
- tox *
- tqdm *
- twine *
- watchdog *
- wheel *