Ecosyste.ms: Summary

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pyOpenSci: https://github.com/JonnyTran/OpenOmics

data-integration data-manipulation genomics multi-omics python

Score: 6.423246963533519

Last synced: about 6 hours ago
JSON representation

Repository metadata:

A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.

Host: GitHub
URL: https://github.com/JonnyTran/OpenOmics
Owner: JonnyTran
License: mit
Created: 2018-03-16T17:35:27.000Z (about 6 years ago)
Default Branch: master
Last Pushed: 2024-04-02T22:00:28.000Z (about 2 months ago)
Last Synced: 2024-04-30T09:26:20.269Z (19 days ago)
Topics: data-integration, data-manipulation, genomics, multi-omics, python
Language: Python
Homepage: https://openomics.readthedocs.io/en/latest/
Size: 68.5 MB
Stars: 29
Watchers: 7
Forks: 13
Open Issues: 15
Metadata Files:
- Readme: README.md
- Contributing: docs/contributing.md
- License: LICENSE
- Citation: CITATION.cff

Owner metadata:

Name: Nhat (Jonny) Tran
Login: JonnyTran
Email:
Kind: user
Description: Graph neural networks, bioinformatics, and ML engineering for all things NLP, RNA/protein sequence learning, and knowledge graphs. Work GH: @JTran-IDM
Website: jonny.bio
Location:
Twitter: Jonny_Wireless
Company:
Icon url: https://avatars.githubusercontent.com/u/4750391?u=6b93a8167ee6333a9825cedfd435431044456eea&v=4
Repositories: 41
Last ynced at: 2024-04-30T09:26:15.927Z
Profile URL: https://github.com/JonnyTran

GitHub Events

Total

Create event: 67
Delete event: 67
Fork event: 5
Issue comment event: 9
Issues event: 3
Member event: 2
Pull request event: 100
Pull request review comment event: 1
Pull request review event: 7
Push event: 641
Watch event: 13
Total: 915

Last Year

Create event: 17
Delete event: 8
Fork event: 1
Issue comment event: 4
Issues event: 3
Pull request event: 31
Push event: 41
Watch event: 8
Total: 113

Committers metadata

Last synced: 5 days ago

Total Commits: 2,001
Total Committers: 14
Avg Commits per committer: 142.929
Development Distribution Score (DDS): 0.489

Commits in past year: 359
Committers in past year: 8
Avg Commits per committer in past year: 44.875
Development Distribution Score (DDS) in past year: 0.401

Name	Email	Commits
Jonny Tran	n**n@m**u	1022
JonnyTran	J**n@g**m	704
JonnyTran	j**n@g**m	123
JonnyTran	D****9	77
pyup-bot	g**t@p**o	22
Nhat (Jonny) Tran	4****n	18
deepsource-autofix[bot]	6****]	12
sdhutchins	s**s@u**u	10
snyk-bot	s**t@s**o	5
Shaurita Hutchins	m**s@g**m	2
t-silvers	s**s@m**e	2
Arfon Smith	a****n	2
Steve Moss	g**l@g**m	1
DeepSource Bot	b**t@d**o	1

Issue and Pull Request metadata

Last synced: 2 days ago

Total issues: 16
Total pull requests: 107
Average time to close issues: 6 days
Average time to close pull requests: 8 days
Total issue authors: 8
Total pull request authors: 8
Average comments per issue: 2.81
Average comments per pull request: 0.07
Merged pull request: 26
Bot issues: 0
Bot pull requests: 51

Past year issues: 3
Past year pull requests: 19
Past year average time to close issues: N/A
Past year average time to close pull requests: about 1 month
Past year issue authors: 2
Past year pull request authors: 3
Past year average comments per issue: 0.33
Past year average comments per pull request: 0.05
Past year merged pull request: 8
Past year bot issues: 0
Past year bot pull requests: 0

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/JonnyTran/OpenOmics

Top Issue Authors

JonnyTran (6)
ksielemann (3)
jamesbraza (2)
gawbul (1)
piyushm27 (1)
pyup-bot (1)
Rana-Sabrii (1)
sdhutchins (1)

Top Pull Request Authors

deepsource-autofix[bot] (51)
pyup-bot (27)
JonnyTran (21)
sdhutchins (2)
snyk-bot (2)
gawbul (2)
arfon (1)
t-silvers (1)

Top Issue Labels

pyopensci-review (6)
help wanted (2)
enhancement (1)
doc (1)

Top Pull Request Labels

doc (13)

Dependencies

requirements.txt pypi

astropy *
biopython *
bioservices *
bokeh *
dash *
dash-bootstrap-components *
dash-daq *
dask *
filetype *
goatools *
gtfparse *
gunicorn *
h5py *
itsdangerous *
matplotlib *
networkx *
numpy *
obonet *
pandas *
rarfile *
scipy *
six *
sqlalchemy *
typing *
validators *

.github/workflows/python-package.yml actions

actions/cache v2 composite
actions/checkout v2 composite
actions/setup-python v2 composite
codecov/codecov-action v1 composite

docs/requirements.txt pypi

Sphinx *
bumpversion *
coverage *
flake8 *
furo *
graphviz *
myst-parser *
pip *
pytest >=7.0.0
pytest-cov *
pytest-runner *
ruamel.yaml *
sphinx-autobuild *
sphinx-automodapi *
sphinx-copybutton *
sphinx-inline-tabs *
sphinx_autodoc_typehints *
tornado >=6.3.3
tox *
tqdm *
twine *
watchdog *
wheel *

pyproject.toml pypi

setup.py pypi