Collections: JOSS
https://github.com/RadioAstronomySoftwareGroup/pyuvdata
A pythonic interface for radio astronomy interferometry data (uvfits, measurement sets, uvh5, others)
astronomy interferometry python radio-astronomy
Last synced: 29 Sep 2026
https://github.com/pnnl/HyperNetX
Python package for hypergraph analysis and visualization.
hypergraph hypergraphs knowledge-graph property-hypergraphs python s-linegraph simplicial-complexes simplicial-homology
Last synced: 28 Sep 2026
https://github.com/1313e/CMasher
Scientific colormaps for making accessible, informative and 'cmashing' plots
colormaps data-visualization matplotlib plotting python utility-functions
Last synced: 28 Sep 2026
https://github.com/tidymodels/stacks
An R package for tidy stacked ensemble modeling
Last synced: 28 Sep 2026
https://github.com/oemof/tespy
Thermal Engineering Systems in Python (TESPy). This package provides a powerful simulation toolkit for thermodynamic modeling of thermal engineering plants such as power plants, heat pumps or refrigeration machines.
cooling energy-system exergy heat-pump heating powerplant process-engineering python refrigeration simulation thermodynamic-cycles thermodynamics
Last synced: 28 Sep 2026
https://github.com/Pometry/Raphtory
Scalable graph analytics database powered by a multithreaded, vectorized temporal engine, written in Rust
analytics database embedded-database graph graph-database olap python rust temporal time-series
Last synced: 28 Sep 2026
https://github.com/cgre-aachen/gemgis
Spatial data processing for geomodeling
geographic geographic-data geomodeling geospatial jupyter jupyter-notebook modeling notebooks processing python raster-data spatial-data vector-data visualization
Last synced: 28 Sep 2026
https://github.com/onecodex/finch-rs
A genomic minhashing implementation in Rust
Last synced: 28 Sep 2026
https://github.com/OpenEnergyPlatform/open-MaStR
A Python Package to Download and Process the German Power Plant and Energy System Registry Marktstammdatenregister (MaStR)
bnetza dataset datasets energy energy-data marktstammdatenregister oep open-energy-family python solar
Last synced: 28 Sep 2026
https://github.com/SMTG-Bham/doped
doped is a Python software for the generation, pre-/post-processing and analysis of defect supercell calculations, implementing the defect simulation workflow in an efficient, reproducible, user-friendly yet powerful and fully-customisable manner.
ab-initio computational-chemistry computational-materials-science defect-calculation defect-formation-energy defect-levels defect-thermodynamics defects dft doping fermi-level point-defects pymatgen semiconductors shakenbreak transition-levels vasp
Last synced: 28 Sep 2026
https://github.com/ropensci/tidyhydat
An R package to import Water Survey of Canada hydrometric data and make it tidy
citz government-data hydrology hydrometrics r r-package rstats tidy-data water-resources
Last synced: 28 Sep 2026
https://github.com/mathLab/EZyRB
Easy Reduced Basis method
autoencoder data-driven hacktoberfest model-order-reduction model-reduction non-intrusive-model-order-reduction pod-gpr pod-interpolation pod-nn proper-orthogonal-decomposition reduced-basis
Last synced: 28 Sep 2026
https://github.com/gridap/Gridap.jl
Grid-based approximation of partial differential equations in Julia
finite-elements gridap julia numerical-methods partial-differential-equations pdes
Last synced: 28 Sep 2026
https://github.com/pymedphys/pymedphys
A community effort to develop an open standard library for Medical Physics in Python. Building quality transparent software together via peer review and open source distribution. Open code is better science.
dicom medical-physics radiation-oncology radiation-physics radiation-therapy radiotherapy
Last synced: 29 Sep 2026
https://github.com/gadomski/antimeridian
Correct GeoJSON geometries that cross the 180th meridian
antimeridian geojson geospatial python
Last synced: 28 Sep 2026
https://github.com/vanheeringen-lab/genomepy
genes and genomes at your fingertips
bioconda ensembl genome ncbi python ucsc
Last synced: 28 Sep 2026
https://github.com/PMEAL/porespy
A set of tools for characterizing and analyzing 3D images of porous materials
3d-images image-analysis porespy porous-materials porous-media python scientific-visualization tomography voxel-generator
Last synced: 29 Sep 2026
https://github.com/UW-Hydro/MetSim
Meteorology Simulator
climate disaggregation hydrology meteorology mtclim
Last synced: 28 Sep 2026
https://github.com/AlexanderFabisch/gmr
Gaussian Mixture Regression
gaussian-mixture-models machine-learning python regression
Last synced: 28 Sep 2026
https://github.com/mne-tools/mne-icalabel
Automatic labeling of ICA components in Python.
eeg ica neuroscience python
Last synced: 28 Sep 2026
https://github.com/vc1492a/PyNomaly
Anomaly detection using LoOP: Local Outlier Probabilities, a local density based outlier detection method providing an outlier score in the range of [0,1].
anomalies anomaly-detection machine-learning nearest-neighbors outlier-detection outlier-scores outliers probability
Last synced: 28 Sep 2026
https://github.com/vmagnin/gtk-fortran
A GTK / Fortran binding, and its documentation (in the Wiki tab).
bindings cross-platform fortran fortran-package-manager graphical-user-interface graphics gtk gtk-fortran gtk4 gui
Last synced: 28 Sep 2026
https://github.com/ropensci/rdataretriever
R interface to the Data Retriever
data data-science database datasets r r-package rstats science
Last synced: 28 Sep 2026
https://github.com/JuliaManifolds/Manopt.jl
🏔️Optimization on Riemannian Manifolds in Julia
julia manifolds manopt optimization
Last synced: 28 Sep 2026
https://github.com/zillow/quantile-forest
Quantile Regression Forests compatible with scikit-learn.
machine-learning prediction-intervals python quantile-regression quantile-regression-forests random-forest scikit-learn-api uncertainty-estimation
Last synced: 28 Sep 2026
https://github.com/xCDAT/xcdat
An extension of xarray for climate data analysis on structured grids.
cdat cf-conventions climate-analysis climate-data climate-data-analysis climate-research climate-science climate-sciences cmip cmip6 e3sm earth-system earth-system-data earth-system-science pcmdi python xarray xcdat
Last synced: 28 Sep 2026
https://github.com/JuliaGeometry/DelaunayTriangulation.jl
DelaunayTriangulation.jl: A Julia package for Delaunay triangulations and Voronoi tessellations in the plane
computational-geometry delaunay delaunay-triangulation geometry meshing power-diagram tessellation triangulation voronoi voronoi-diagram
Last synced: 28 Sep 2026
https://github.com/mpl-extensions/mpl-interactions
Sliders to control matplotlib and other interactive goodies. Works in any interactive backend and even uses ipywidgets when in a Jupyter notebook
ipympl jupyter jupyter-widgets jupyterlab matplotlib python
Last synced: 28 Sep 2026
https://github.com/FitSNAP/FitSNAP
Software for generating machine-learning interatomic potentials for LAMMPS
Last synced: 28 Sep 2026
https://github.com/sunpy/drms
Access HMI, AIA and MDI data with Python from public JSOC DRMS servers
Last synced: 28 Sep 2026
https://github.com/HPAC/matchpy
A library for pattern matching on symbolic expressions in Python.
pattern-matching python symbolic-expressions term-rewriting
Last synced: 28 Sep 2026
https://github.com/rgerum/pylustrator
Visualisations of data are at the core of every publication of scientific research results. They have to be as clear as possible to facilitate the communication of research. As data can have different formats and shapes, the visualisations often have to be adapted to reflect the data as well as possible. We developed Pylustrator, an interface to directly edit python generated matplotlib graphs to finalize them for publication. Therefore, subplots can be resized and dragged around by the mouse, text and annotations can be added. The changes can be saved to the initial plot file as python code.
code-generation gui interactive matplotlib visualisation
Last synced: 28 Sep 2026
https://github.com/esa/polyhedral-gravity-model
Implementation of a polyhedral gravity model in C++17 with a Python Binding
cpp17 gravity polyhedral-model python
Last synced: 28 Sep 2026
https://github.com/xanaduAI/thewalrus
A library for the calculation of hafnians, Hermite polynomials and Gaussian boson sampling.
algorithm combinatorics graphs matrix optimization physics quantum quantum-computing
Last synced: 28 Sep 2026
https://github.com/JunoLab/Weave.jl
Scientific reports/literate programming for Julia
julia literate-programming reproducible-research scientific-reports scientific-workflows
Last synced: 28 Sep 2026
https://github.com/open-atmos/PySDM
Pythonic particle-based (super-droplet) cloud microphysics (and aqueous-chemistry) package with box, parcel & 1D/2D prescribed-flow examples in Python, Julia and Matlab
atmospheric-modelling atmospheric-physics cuda gpu gpu-computing monte-carlo-simulation numba nvrtc particle-system physics-simulation pint pypi-package python research simulation thrust
Last synced: 28 Sep 2026
https://github.com/OpenMDAO/dymos
Open Source Optimization of Dynamic Multidisciplinary Systems
co-design nasa openmdao optimal-control pseudospectral trajectory-optimization
Last synced: 28 Sep 2026
https://github.com/dhermes/bezier
Helper for BĂ©zier Curves, Triangles, and Higher Order Objects
Last synced: 28 Sep 2026
https://github.com/ropensci/ezknitr
Avoid the typical working directory pain when using 'knitr'
knitr peer-reviewed r r-package reproducibility rmarkdown rmd rstats
Last synced: 28 Sep 2026
https://github.com/NASA-Planetary-Science/sbpy
A Python package for small bodies research
asteroids astronomy comets research
Last synced: 28 Sep 2026
https://github.com/weecology/retriever
Quickly download, clean up, and install public datasets into a database management system
data data-retrieval data-science dataset datasets hacktobefest python
Last synced: 28 Sep 2026
https://github.com/CLIMADA-project/climada_python
CLIMADA is a free and open-source software framework for climate risk assessment and adaptation option appraisal.
Last synced: 28 Sep 2026
https://github.com/jrkerns/pylinac
An image analysis library for medical physics
image-analysis image-processing medical-physics python radiation-oncology
Last synced: 28 Sep 2026
https://github.com/roualdes/bridgestan
BridgeStan provides efficient in-memory access through Python, Julia, and R to the methods of a Stan model.
c cpp julia python r stan
Last synced: 28 Sep 2026
https://github.com/materialsproject/pymatgen-analysis-defects
Defect analysis modules for pymatgen
Last synced: 28 Sep 2026
https://github.com/carlganz/rintrojs
Wrapper for the Intro.js library
cran introjs r shiny
Last synced: 28 Sep 2026
https://github.com/flekschas/regl-scatterplot
Scalable WebGL-based scatter plot library build with Regl
2d regl scatter-plot scatterplot visualization webgl
Last synced: 28 Sep 2026
https://github.com/stingraysoftware/stingray
Anything can happen in the next half hour (including spectral timing made easy)!
astronomy astrophysics blackhole blackholes data-analysis fourier-analysis fourier-transform hacktoberfest neutronstars pulsars time-series time-series-analysis timeseries x-ray x-ray-binaries
Last synced: 28 Sep 2026
https://github.com/StingraySoftware/stingray
Anything can happen in the next half hour (including spectral timing made easy)!
astronomy astrophysics blackhole blackholes data-analysis fourier-analysis fourier-transform hacktoberfest neutronstars pulsars time-series time-series-analysis timeseries x-ray x-ray-binaries
Last synced: 28 Sep 2026
https://github.com/SuperKogito/spafe
:sound: spafe: Simplified Python Audio Features Extraction
audio audio-analysis beat dsp features-extraction filterbank frequencies frequency frequency-analysis gammatone-filterbanks mfcc music music-information-retrieval pitch python signal-processing sound speech-processing time-frequency-analysis voice
Last synced: 28 Sep 2026
https://github.com/jacksund/simmate
Simmate: a full-stack framework for chemistry research.
Last synced: 28 Sep 2026
https://github.com/data-edu/tidyLPA
Easily carry out Latent Profile Analysis (LPA) using open-source or commercial software
Last synced: 28 Sep 2026
https://github.com/mbhall88/rasusa
Randomly subsample sequencing reads or alignments
alignment bam bioinformatics coverage downsample fasta fastq genome-analysis random rust subsampling
Last synced: 28 Sep 2026
https://github.com/ropensci/USAboundaries
Historical and Contemporary Boundaries of the United States of America
digital-history history r r-package rstats spatial-data
Last synced: 28 Sep 2026
https://github.com/hainegroup/oceanspy
A Python package to facilitate ocean model data analysis and visualization.
ocean oceanography physical-oceanography
Last synced: 28 Sep 2026
https://github.com/spectrapepper/spectrapepper
A Python package for advanced processing and combinatorial analysis of spectroscopy data.
Last synced: 28 Sep 2026
https://github.com/ReactiveBayes/RxInfer.jl
Julia package for automated Bayesian inference on a factor graph with reactive message passing
bayesian-inference inference-engine julia-language machine-learning message-passing probabilistic-programming variational-inference
Last synced: 28 Sep 2026
https://github.com/karllark/dust_extinction
Astronomical Dust Extinction
astronomy astrophysics astropy dust dust-extinction extinction hacktoberfest
Last synced: 28 Sep 2026
https://github.com/dit/dit
**dit** is a Python package for information theory.
information-theory python
Last synced: 28 Sep 2026
https://github.com/volkamerlab/opencadd
A Python library for structural cheminformatics
Last synced: 28 Sep 2026
https://github.com/juanmc2005/diart
A python package to build AI-powered real-time audio applications
deep-learning real-time speaker-diarization speaker-embedding streaming-audio transcription voice-activity-detection
Last synced: 28 Sep 2026
https://github.com/ECSHackWeek/impedance.py
A Python package for working with electrochemical impedance data
battery corrosion electrochemistry fuel-cell impedance lithium-ion
Last synced: 28 Sep 2026
https://github.com/chocoteam/choco-solver
An open-source Java library for Constraint Programming
constraint-optimisation-problem constraint-programming constraint-satisfaction-problem constraint-solver constraints copr csp java solver
Last synced: 28 Sep 2026
https://github.com/drostlab/philentropy
Information Theory and Distance Quantification with R
distance-measures distance-quantification information-theory jensen-shannon-divergence parametric-distributions r similarity-measures statistics
Last synced: 28 Sep 2026
https://github.com/N-Wouda/ALNS
Adaptive large neighbourhood search (and more!) in Python.
adaptive-large-neighbourhood-search alns cutting-stock-problem flow-shop metaheuristic operations-research python rcpsp scheduling-problem travelling-salesman-problem tsp vehicle-routing-problem vrp
Last synced: 28 Sep 2026
https://github.com/jacob-long/jtools
Tools for summarizing/visualizing regressions and other helpful stuff
r r-package social-sciences
Last synced: 28 Sep 2026
https://github.com/ME-ICA/tedana
TE-dependent analysis of multi-echo fMRI
brain-imaging fmri neuroimaging python
Last synced: 28 Sep 2026
https://github.com/GalacticDynamics/unxt
Unitful Quantities in JAX
array auto-differentiation dimensions high-performance jax quantities scientific-computing units
Last synced: 28 Sep 2026
https://github.com/gavinsimpson/gratia
ggplot-based graphics and useful functions for GAMs fitted using the mgcv package
distributional-regression gam gamm generalized-additive-mixed-models generalized-additive-models ggplot2 glm lm mgcv penalized-spline r r-package random-effects smoothing splines
Last synced: 28 Sep 2026
https://github.com/Toloka/crowd-kit
Control the quality of your labeled data with the Python tools you already know.
aggregations annotation crowd crowdsourcing data-mining data-science labeling python quality-control toloka truth-inference
Last synced: 28 Sep 2026
https://github.com/ropensci/nomisr
Access UK official statistics from the Nomis database through R.
api-client census-data demography geographic-data national-statistics official-statistics officialstatistics peer-reviewed r r-package rstats uk
Last synced: 28 Sep 2026
https://github.com/chasmani/piecewise-regression
piecewise-regression (aka segmented regression) in python. For fitting straight line models to data with one or more breakpoints where the gradient changes.
data-analysis linear-regression model-fitting piecewise-regression python3 regression segmented-regression statistics
Last synced: 28 Sep 2026
https://github.com/SMTG-Bham/sumo
Heavyweight plotting tools for ab initio calculations
computational-chemistry materials-science plotting python
Last synced: 28 Sep 2026
https://github.com/dieghernan/tidyterra
Work with and visualize terra spatial objects using tidyverse methods and ggplot2.
cran cran-r ggplot-extension r r-package r-spatial rspatial rstats rstats-package terra
Last synced: 28 Sep 2026
https://github.com/MillionConcepts/pdr
[P]lanetary [D]ata [R]eader - A single function to read all Planetary Data System (PDS) data into Python
Last synced: 28 Sep 2026
https://github.com/mscroggs/symfem
A symbolic finite element definition library
finite-elements symbolic-algebra
Last synced: 28 Sep 2026
https://github.com/VincentStimper/normalizing-flows
PyTorch implementation of normalizing flow models
density-estimation glow invertible-neural-networks neural-spline-flow normalizing-flow pytorch real-nvp residual-flow variational-autoencoder variational-inference
Last synced: 28 Sep 2026
https://github.com/glotzerlab/coxeter
Collection of tools to help initialize and manipulate geometries in two and three dimensions.
computational-geometry geometry physics polygons polyhedra shapes
Last synced: 28 Sep 2026
https://github.com/ocean-eddy-cpt/gcm-filters
Diffusion-based Spatial Filtering of Gridded Data
Last synced: 28 Sep 2026
https://github.com/fermisurfaces/IFermi
Fermi surface generation, analysis and visualisation.
fermi-slice fermi-surface vasp
Last synced: 28 Sep 2026
https://github.com/SMTG-Bham/ShakeNBreak
Defect structure-searching employing chemically-guided bond distortions
ab-initio computational-chemistry dft distortions materials materials-design materials-informatics point-defects pymatgen python3 science semiconductors structure-searching symmetry-breaking vasp
Last synced: 28 Sep 2026
https://github.com/bihealth/vcfpy
Python 3 library with good support for both reading and writing VCF
bioinformatics file-format parsing vcf writing
Last synced: 28 Sep 2026
https://github.com/JuliaDynamics/ResumableFunctions.jl
C# style generators a.k.a. semi-coroutines for Julia.
finite-state-machine iterator julia semi-coroutine stackless
Last synced: 28 Sep 2026
https://github.com/larq/larq
An Open-Source Library for Training Binarized Neural Networks
binarized-neural-networks binder deep-learning keras larq machine-learning python quantized-neural-networks tensorflow
Last synced: 28 Sep 2026
https://github.com/springer-math/Mathematics-of-Epidemics-on-Networks
Source code accompanying 'Mathematics of Epidemics on Networks' by Kiss, Miller, and Simon http://www.springer.com/us/book/9783319508047 . Documentation for the software package is at https://epidemicsonnetworks.readthedocs.io/en/latest/
Last synced: 28 Sep 2026
https://github.com/dftd3/simple-dftd3
Library first implementation of the D3 dispersion correction
ase computational-chemistry counter-poise-correction dispersion-correction fortran-package-manager pyscf qcschema quantum-chemistry
Last synced: 28 Sep 2026
https://github.com/ropensci/plater
Tools to make it easy to work with microtiter plate-shaped data
r r-package rstats
Last synced: 28 Sep 2026
https://github.com/xoolive/traffic
A toolbox for processing and analysing air traffic data
adsb air-traffic-data data-analytics data-science data-visualisation declarative-pipeline mode-s trajectory
Last synced: 28 Sep 2026
https://gitlab.com/ags-data-format-wg/ags-python-library
[Documentation](https://ags-data-format-wg.gitlab.io/ags-python-library/index.html) | A library to read and write AGS files using Pandas DataFrames
Geotechnics geology geospatial geotechnical openml python
Last synced: 28 Sep 2026
https://github.com/ngsxfem/ngsxfem
Add-On to NGSolve for unfitted finite element discretizations (XFEM, CutFEM, TraceFEM, etc...)
Last synced: 28 Sep 2026
https://github.com/HLasse/TextDescriptives
A Python library for calculating a large variety of metrics from text
dependency-distance descriptive-statistics nlp python readability readability-scores spacy spacy-extension statistics syntactic-analysis
Last synced: 28 Sep 2026
https://github.com/terrytangyuan/autoplotly
Automatic Generation of Interactive Visualizations for Statistical Results
data-visualization ggplot2 interactive-visualizations machine-learning plotly plotlyjs rstats statistics
Last synced: 28 Sep 2026
https://github.com/petrobras/ross
ROSS is a library written in Python for rotordynamic analysis.
Last synced: 28 Sep 2026
https://github.com/handley-lab/anesthetic
Nested Sampling post-processing and plotting
bayesian-inference fastkde matplotlib mcmc nested-sampling numpy pandas samples scipy
Last synced: 28 Sep 2026
https://github.com/martinfleis/clustergram
Clustergram - Visualization and diagnostics for cluster analysis in Python
Last synced: 28 Sep 2026
https://github.com/perfanalytics/pose2sim
Markerless kinematics with any cameras — From 2D Pose estimation to 3D OpenSim motion
3d-kinematics biomechanics blender coaching kinematics markerless mocap motion-capture openpose opensim pose-estimation sports
Last synced: 28 Sep 2026
https://github.com/JacksonBurns/astartes
Better Data Splits for Machine Learning
ai data-science machine-learning ml python sampling
Last synced: 28 Sep 2026
https://github.com/xuanxu/nimbus
Nimbus is a Ruby gem to implement Random Forest algorithms in a genomic selection context
random-forest
Last synced: 28 Sep 2026
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