finch-rs

Score: 18.617486463645267

Last synced: about 10 hours ago
JSON representation

Repository metadata:

A genomic minhashing implementation in Rust

Host: GitHub
URL: https://github.com/onecodex/finch-rs
Owner: onecodex
License: mit
Created: 2016-12-30T05:09:18.000Z (over 9 years ago)
Default Branch: master
Last Pushed: 2025-06-17T23:22:52.000Z (about 1 year ago)
Last Synced: 2026-04-27T20:30:27.148Z (about 2 months ago)
Language: Rust
Homepage: https://www.onecodex.com
Size: 379 KB
Stars: 103
Watchers: 16
Forks: 8
Open Issues: 15
Metadata Files:
- Readme: README.md
- License: LICENSE.txt
- Code of conduct: CODE_OF_CONDUCT.md

Owner metadata:

Name: One Codex
Login: onecodex
Email: hello@onecodex.com
Kind: organization
Description:
Website:
Location:
Twitter:
Company:
Icon url: https://avatars.githubusercontent.com/u/7833433?v=4
Repositories: 60
Last Synced at: 2024-04-17T18:11:07.659Z
Profile URL: https://github.com/onecodex

GitHub Events

Total

Create event: 2
Fork event: 1
Issue comment event: 1
Issues event: 1
Pull request event: 6
Pull request review comment event: 2
Pull request review event: 2
Push event: 1
Watch event: 7
Total: 23

Last Year

Create event: 1
Watch event: 3
Total: 4

Committers metadata

Last synced: 13 days ago

Total Commits: 137
Total Committers: 14
Avg Commits per committer: 9.786
Development Distribution Score (DDS): 0.511

Commits in past year: 5
Committers in past year: 1
Avg Commits per committer in past year: 5.0
Development Distribution Score (DDS) in past year: 0.0

Name	Email	Commits
Roderick Bovee	r**k@o**m	67
Vincent Prouillet	b**k@g**m	26
Austin Richardson	a**s@a**g	14
Jai Ram Rideout	j**t@i**m	6
Roderick Bovee	r**e@g**m	6
Nick Greenfield	b**d@g**m	6
polyatail	a**z@g**m	3
Max Blachman	b**x@g**m	2
Luiz Irber	l**z@o**m	2
dependabot[bot]	4****]	1
Luiz Irber	l****r	1
Giovanni Rosa	g**3@y**m	1
Eh2406	Y**v@g**m	1
David Tolnay	d**y@g**m	1

Issue and Pull Request metadata

Last synced: 8 months ago

Total issues: 39
Total pull requests: 34
Average time to close issues: 11 months
Average time to close pull requests: 12 days
Total issue authors: 13
Total pull request authors: 13
Average comments per issue: 1.72
Average comments per pull request: 0.59
Merged pull request: 27
Bot issues: 0
Bot pull requests: 2

Past year issues: 0
Past year pull requests: 3
Past year average time to close issues: N/A
Past year average time to close pull requests: about 15 hours
Past year issue authors: 0
Past year pull request authors: 1
Past year average comments per issue: 0
Past year average comments per pull request: 0.33
Past year merged pull request: 1
Past year bot issues: 0
Past year bot pull requests: 0

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/onecodex/finch-rs

Top Issue Authors

bovee (21)
HadrienG (4)
boydgreenfield (2)
jianshu93 (2)
maxbla (2)
tseemann (1)
NateBaileyTempus (1)
wwood (1)
boasvdp (1)
audy (1)
DoreenM (1)
hgbrian (1)
dcdanko (1)

Top Pull Request Authors

audy (10)
jairideout (6)
Keats (6)
bovee (5)
maxbla (2)
dependabot[bot] (2)
luizirber (2)
dtolnay (1)
donovan-h-parks (1)
fossabot (1)
polyatail (1)
Eh2406 (1)
grosa1 (1)

Top Issue Labels

discussion (2)
external (1)
easy (1)
bug (1)
DevOps (1)
design (1)
enhancement (1)
chore (1)

Top Pull Request Labels

dependencies (2)

Package metadata

Total packages: 5
Total downloads:
- cargo: 73,624 total
- pypi: 54 last-month
Total dependent packages: 6 (may contain duplicates)
Total dependent repositories: 8 (may contain duplicates)
Total versions: 44
Total maintainers: 7

proxy.golang.org: github.com/onecodex/finch-rs

Homepage:
Documentation: https://pkg.go.dev/github.com/onecodex/finch-rs#section-documentation
Licenses:
Latest release: v0.6.2 (published about 1 year ago)
Last Synced: 2026-05-28T04:01:48.387Z (26 days ago)
Versions: 16
Dependent Packages: 0
Dependent Repositories: 0
Rankings:
- Dependent packages count: 4.894%
- Average: 5.059%
- Dependent repos count: 5.223%

crates.io: finch

An implementation of min-wise independent permutation locality sensitive hashing ('MinHashing') for genomic data and command-line utility for manipulation.

Homepage:
Documentation: https://docs.rs/finch/
Licenses: MIT
Latest release: 0.6.2 (published about 1 year ago)
Last Synced: 2026-05-27T20:01:54.393Z (27 days ago)
Versions: 19
Dependent Packages: 5
Dependent Repositories: 7
Downloads: 68,227 Total
Rankings:
- Dependent packages count: 6.216%
- Dependent repos count: 8.685%
- Downloads: 9.331%
- Average: 11.061%
- Stargazers count: 14.159%
- Forks count: 16.911%
Maintainers (6)
- Keats
- bovee
- boydgreenfield
- jairideout
- GSGerritsen
- audy

pypi.org: finch-sketch

An implementation of min-wise independent permutation locality sensitive hashing ('MinHashing') for genomic data and command-line utility for manipulation.

Homepage:
Documentation: https://finch-sketch.readthedocs.io/
Licenses: MIT
Latest release: 0.6.2 (published about 1 year ago)
Last Synced: 2026-05-08T22:33:17.124Z (about 2 months ago)
Versions: 5
Dependent Packages: 0
Dependent Repositories: 1
Downloads: 54 Last month
Rankings:
- Stargazers count: 7.528%
- Dependent packages count: 10.118%
- Forks count: 11.923%
- Dependent repos count: 21.552%
- Average: 26.576%
- Downloads: 81.759%
Maintainers (1)
- referencegenomics

crates.io: finch_cli

An implementation of min-wise independent permutation locality sensitive hashing ('MinHashing') for genomic data and command-line utility for manipulation.

Homepage:
Documentation: https://docs.rs/finch_cli/
Licenses: MIT
Latest release: 0.5.0 (published over 3 years ago)
Last Synced: 2026-05-17T16:16:42.157Z (about 1 month ago)
Versions: 3
Dependent Packages: 0
Dependent Repositories: 0
Downloads: 4,092 Total
Rankings:
- Stargazers count: 13.891%
- Forks count: 16.816%
- Dependent repos count: 29.318%
- Average: 32.249%
- Dependent packages count: 33.812%
- Downloads: 67.408%
Maintainers (3)

crates.io: finch_lib

An implementation of min-wise independent permutation locality sensitive hashing ('MinHashing') for genomic data and command-line utility for manipulation.

Homepage:
Documentation: https://docs.rs/finch_lib/
Licenses: MIT
Latest release: (published 2 months ago)
Last Synced: 2026-05-18T13:34:54.037Z (about 1 month ago)
Versions: 1
Dependent Packages: 1
Dependent Repositories: 0
Downloads: 1,305 Total
Rankings:
- Stargazers count: 13.819%
- Forks count: 16.816%
- Dependent packages count: 16.956%
- Dependent repos count: 29.318%
- Average: 32.414%
- Downloads: 85.163%
Maintainers (1)
- Keats

Dependencies

Cargo.lock cargo

120 dependencies

cli/Cargo.toml cargo

assert_cmd 1 development
predicates 1 development
proptest 0.10 development
anyhow 1
clap 2.33.0
finch 0.4
serde_json 1

lib/Cargo.toml cargo

predicates 1 development
proptest 0.10 development
bincode 1.2.0
capnp 0.14
memmap 0.7.0
murmurhash3 0.0.5
ndarray 0.14
needletail 0.4
numpy 0.13
pyo3 0.13
rayon 1.2.0
serde 1.0
serde_json 1
thiserror 1

.github/workflows/ci.yml actions

actions-rs/cargo v1 composite
actions-rs/toolchain v1 composite
actions/checkout master composite

Dockerfile docker

ekidd/rust-musl-builder stable build
python 3.7-slim-stretch build

Cargo.toml cargo

pyproject.toml pypi

.github/workflows/release.yml actions

PyO3/maturin-action v1 composite
actions/attest-build-provenance v1 composite
actions/checkout v4 composite
actions/download-artifact v4 composite
actions/upload-artifact v4 composite
svenstaro/upload-release-action v2 composite

ecosyste.ms

Data

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Experiments

Summary

JOSS: https://github.com/onecodex/finch-rs

Repository metadata:

Owner metadata:

GitHub Events

Total

Last Year

Committers metadata

Issue and Pull Request metadata

Top Issue Authors

Top Pull Request Authors

Top Issue Labels

Top Pull Request Labels

Package metadata

proxy.golang.org: github.com/onecodex/finch-rs

crates.io: finch

pypi.org: finch-sketch

crates.io: finch_cli

crates.io: finch_lib

Dependencies