rasusa

alignment bam bioinformatics coverage downsample fasta fastq genome-analysis random rust subsampling

Score: 17.505543746270884

Last synced: about 18 hours ago
JSON representation

Repository metadata:

Randomly subsample sequencing reads or alignments

Host: GitHub
URL: https://github.com/mbhall88/rasusa
Owner: mbhall88
License: mit
Created: 2019-09-26T13:25:47.000Z (over 6 years ago)
Default Branch: main
Last Pushed: 2026-04-14T09:55:49.000Z (2 months ago)
Last Synced: 2026-04-25T20:09:33.492Z (about 2 months ago)
Topics: alignment, bam, bioinformatics, coverage, downsample, fasta, fastq, genome-analysis, random, rust, subsampling
Language: Rust
Homepage: https://doi.org/10.21105/joss.03941
Size: 31.9 MB
Stars: 260
Watchers: 3
Forks: 20
Open Issues: 2
Metadata Files:
- Readme: README.md
- Changelog: CHANGELOG.md
- License: LICENSE

Owner metadata:

Name: Michael Hall
Login: mbhall88
Email:
Kind: user
Description: Postdoc @ University of Queensland with @LeahRoberts Bioinformatics | Nanopore | Microbial Genomics | Software Dev.
Website: https://mbh.sh
Location: Sunshine Coast, Australia
Twitter:
Company: University of Queensland | UQCCR
Icon url: https://avatars.githubusercontent.com/u/20403931?v=4
Repositories: 138
Last Synced at: 2026-03-29T06:38:48.621Z
Profile URL: https://github.com/mbhall88

GitHub Events

Total

Create event: 33
Delete event: 19
Fork event: 2
Issue comment event: 48
Issues event: 12
Pull request event: 79
Pull request review comment event: 13
Pull request review event: 9
Push event: 73
Release event: 4
Watch event: 36
Total: 328

Last Year

Create event: 33
Delete event: 19
Fork event: 1
Issue comment event: 33
Issues event: 8
Pull request event: 79
Pull request review comment event: 13
Pull request review event: 9
Push event: 72
Release event: 4
Watch event: 15
Total: 286

Committers metadata

Last synced: 2 months ago

Total Commits: 312
Total Committers: 8
Avg Commits per committer: 39.0
Development Distribution Score (DDS): 0.288

Commits in past year: 75
Committers in past year: 4
Avg Commits per committer in past year: 18.75
Development Distribution Score (DDS) in past year: 0.507

Name	Email	Commits
Michael Hall	m**l@m**h	222
Michael Hall	m**8@g**m	46
dependabot[bot]	4****]	39
Pierre Marijon	p**t@a**r	1
George Bouras	8****3	1
Dimas	8****f	1
Andrew Kane	a**w@a**g	1
Pierre Marijon	p**n@h**e	1

Issue and Pull Request metadata

Last synced: 2 months ago

Total issues: 45
Total pull requests: 74
Average time to close issues: 5 months
Average time to close pull requests: about 18 hours
Total issue authors: 26
Total pull request authors: 6
Average comments per issue: 2.36
Average comments per pull request: 0.34
Merged pull request: 54
Bot issues: 0
Bot pull requests: 40

Past year issues: 5
Past year pull requests: 48
Past year average time to close issues: 14 days
Past year average time to close pull requests: 1 day
Past year issue authors: 5
Past year pull request authors: 4
Past year average comments per issue: 2.4
Past year average comments per pull request: 0.29
Past year merged pull request: 28
Past year bot issues: 0
Past year bot pull requests: 38

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/mbhall88/rasusa

Top Issue Authors

mbhall88 (16)
tseemann (3)
natir (2)
npdungca (2)
camilogarciabotero (1)
ilyavs (1)
nbenzakour (1)
amnotagoldfish (1)
k3yavi (1)
nirajmehta96 (1)
MostafaYA (1)
pmielle (1)
AnupamGautam (1)
ankane (1)
genignored (1)

Top Pull Request Authors

dependabot[bot] (40)
mbhall88 (28)
ankane (2)
gbouras13 (2)
natir (1)
adimascf (1)

Top Issue Labels

enhancement (11)
wontfix (1)
help wanted (1)
bug (1)

Top Pull Request Labels

dependencies (40)
rust (32)
autorelease: pending (7)
github_actions (6)
autorelease: tagged (5)

Package metadata

Total packages: 2
Total downloads:
- cargo: 19,105 total
Total dependent packages: 0 (may contain duplicates)
Total dependent repositories: 0 (may contain duplicates)
Total versions: 21
Total maintainers: 1

proxy.golang.org: github.com/mbhall88/rasusa

Homepage:
Documentation: https://pkg.go.dev/github.com/mbhall88/rasusa#section-documentation
Licenses:
Latest release: v2.2.0+incompatible (published 10 months ago)
Last Synced: 2026-04-17T16:02:43.067Z (2 months ago)
Versions: 1
Dependent Packages: 0
Dependent Repositories: 0
Rankings:
- Dependent packages count: 4.941%
- Average: 5.107%
- Dependent repos count: 5.273%

crates.io: rasusa

Randomly subsample reads or alignments

Homepage: https://github.com/mbhall88/rasusa
Documentation: https://docs.rs/rasusa/
Licenses: non-standard
Latest release: 4.0.0 (published 3 months ago)
Last Synced: 2026-04-17T16:02:30.114Z (2 months ago)
Versions: 20
Dependent Packages: 0
Dependent Repositories: 0
Downloads: 19,105 Total
Rankings:
- Stargazers count: 12.399%
- Forks count: 14.898%
- Average: 24.489%
- Dependent repos count: 29.318%
- Downloads: 32.017%
- Dependent packages count: 33.812%
Maintainers (1)
- mbhall88

Dependencies

Cargo.lock cargo

adler 1.0.2
aho-corasick 0.7.18
anyhow 1.0.58
assert_cmd 0.10.2
atty 0.2.14
autocfg 1.1.0
bgzip 0.2.1
bitflags 1.3.2
buf_redux 0.8.4
bytecount 0.6.3
bzip2 0.4.3
bzip2-sys 0.1.11+1.0.8
cc 1.0.73
cfg-if 1.0.0
chrono 0.4.19
clap 3.2.8
clap_derive 3.2.7
clap_lex 0.2.4
colored 1.9.3
crc32fast 1.3.2
difference 2.0.0
escargot 0.3.1
fastrand 1.7.0
fern 0.5.9
flate2 1.0.24
float-cmp 0.8.0
getrandom 0.1.16
hashbrown 0.12.1
heck 0.4.0
hermit-abi 0.1.19
indexmap 1.9.1
instant 0.1.12
itoa 1.0.2
jobserver 0.1.24
lazy_static 1.4.0
libc 0.2.126
log 0.4.17
lzma-sys 0.1.19
memchr 2.5.0
miniz_oxide 0.5.3
needletail 0.4.1
niffler 2.4.0
normalize-line-endings 0.3.0
num-integer 0.1.45
num-traits 0.2.15
once_cell 1.12.1
os_str_bytes 6.1.0
pkg-config 0.3.25
ppv-lite86 0.2.16
predicates 1.0.8
predicates-core 1.0.3
predicates-tree 1.0.5
proc-macro-error 1.0.4
proc-macro-error-attr 1.0.4
proc-macro2 1.0.40
quote 1.0.20
rand 0.7.3
rand_chacha 0.2.2
rand_core 0.5.1
rand_hc 0.2.0
rand_pcg 0.2.1
redox_syscall 0.2.13
regex 1.5.6
regex-syntax 0.6.26
remove_dir_all 0.5.3
ryu 1.0.10
safemem 0.3.3
serde 1.0.138
serde_derive 1.0.138
serde_json 1.0.82
strsim 0.10.0
syn 1.0.98
tempfile 3.3.0
termcolor 1.1.3
termtree 0.2.4
textwrap 0.15.0
thiserror 1.0.31
thiserror-impl 1.0.31
time 0.1.44
unicode-ident 1.0.1
version_check 0.9.4
wasi 0.9.0+wasi-snapshot-preview1
wasi 0.10.0+wasi-snapshot-preview1
winapi 0.3.9
winapi-i686-pc-windows-gnu 0.4.0
winapi-util 0.1.5
winapi-x86_64-pc-windows-gnu 0.4.0
xz2 0.1.7
zstd 0.7.0+zstd.1.4.9
zstd-safe 3.1.0+zstd.1.4.9
zstd-sys 1.5.0+zstd.1.4.9

Cargo.toml cargo

assert_cmd 0.10 development
predicates 1 development
tempfile 3.1.0 development
anyhow 1.0
chrono 0.4
clap 3.2.8
fern 0.5
log 0.4
needletail 0.4.1
niffler 2.3
rand 0.7.2
rand_pcg 0.2.1
regex 1.5.5
thiserror 1.0

.github/workflows/release-please.yaml actions

googleapis/release-please-action v4 composite

.github/workflows/docker.yaml actions

actions/attest-build-provenance v4 composite
actions/checkout v6 composite
docker/build-push-action v6 composite
docker/login-action v4 composite
docker/metadata-action v5 composite

.github/workflows/release.yaml actions

actions-rs/cargo v1 composite
actions-rs/toolchain v1 composite
actions/checkout v2 composite
actions/upload-artifact master composite
softprops/action-gh-release 59c3b4891632ff9a897f99a91d7bc557467a3a22 composite

.github/workflows/rust-ci.yaml actions

actions-rs/cargo v1 composite
actions-rs/tarpaulin v0.1 composite
actions-rs/toolchain v1 composite
actions/cache v2 composite
actions/checkout v2 composite
actions/upload-artifact v1 composite
codecov/codecov-action v1 composite

Dockerfile docker

bash 5.1 build
rust 1.62 build

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