Collections: JOSS
https://github.com/baccuslab/pyret
Python tools for analysis of neurophysiology data
electrophysiology neuroscience python scientific-computing tools
Last synced: 20 Aug 2026
https://github.com/dpalmasan/TRUNAJOD2.0
An easy-to-use library to extract indices from texts.
coherence cohesion entity-graph lexical-diversity natural-language-processing readability-metrics semantic-measurements spacy spacy-extensions text-analysis text-mining text-processing ttr type-token-ratio
Last synced: 20 Aug 2026
https://github.com/BrownDwarf/gollum
A microservice for programmatic access to precomputed synthetic spectral model grids in astronomy
astronomy astrophysics physics python science spectroscopy stars
Last synced: 20 Aug 2026
https://github.com/distant-viewing/dvt
Distant Viewing Toolkit for the Analysis of Visual Culture
computer-vision cultural-analytics digital-humanities
Last synced: 20 Aug 2026
https://github.com/raamana/mrivis
medical image visualization library and development toolkit
alignment checkerboard comparison mismatch mri neuroimaging neuroscience quality-control registration similarity visualization
Last synced: 20 Aug 2026
https://github.com/ropensci/quadkeyr
An R package designed to create raster images from QuadKey-identified data (Microsoft Bing Maps Tile System), aiming to simplify the analysis of Facebook mobility data.
geospatial quadkey raster rstats tilemap
Last synced: 21 Aug 2026
https://github.com/shaelebrown/TDApplied
An R package for statistics and machine learning with persistence diagrams
Last synced: 20 Aug 2026
https://github.com/CODES-group/opyrability
Python-based Process Operability Package
Last synced: 21 Aug 2026
https://github.com/Jashcraf/katsu
Polarimetric Data Reduction and machine control for measuring the polarization of observatories
Last synced: 21 Aug 2026
https://github.com/alstat/ALUES
Agricultural Land Use Evaluation System
agricultural-modelling agriculture r r-package
Last synced: 20 Aug 2026
https://github.com/stillwater-sc/universal
Large collection of number systems providing custom arithmetic for mixed-precision algorithm development and optimization for AI, Machine Learning, Computer Vision, Signal Processing, CAE, EDA, control, optimization, estimation, and approximation.
arbitrary-precision arbitrary-precision-arithmetic arbitrary-precision-floats arbitrary-precision-integers arithmetic artificial-intelligence c-plus-plus digital-signal-processing embedded-systems fixed-point-arithmetic floating-point-arithmetic half-precision integer-arithmetic interval-arithmetic octa-precision posit-arithmetic quad-precision quarter-precision rational-arithmetic
Last synced: 20 Aug 2026
https://github.com/samirmartins/pydaq
Data Acquisition and Experimental Analysis with Python and Graphical User Interface
arduino arduino-library graphical-user-interface national-instruments nidaq nidaqmx pyside6 python real-datasets step-response
Last synced: 21 Aug 2026
https://github.com/Hegghammer/daiR
R package for Google Document AI
google-cloud ocr r
Last synced: 20 Aug 2026
https://github.com/FAST-LB/pyGCodeDecode
Generate time dependent boundary conditions from a .gcode file.
additive-manufacturing am engineering fdm fff fused-deposition-modelling fused-filament-fabrication gcode material-extrusion mex simulation
Last synced: 20 Aug 2026
https://github.com/gesistsa/sweater
👚 Speedy Word Embedding Association Test & Extras using R
bias-detection r textanalysis wordembedding
Last synced: 20 Aug 2026
https://github.com/berenslab/fundus_image_toolbox
A Python package for fundus image processing.
Last synced: 21 Aug 2026
https://github.com/elsoroka/Satisfiability.jl
Specify satisfiability modulo theories problems in Julia and use the SMT-LIB format to interact with SMT solvers.
satisfiability-modulo-theories smt-lib
Last synced: 20 Aug 2026
https://github.com/RWTH-EBC/AixWeather
A weather data generation tool for building energy system simulations. Pull, Transform, Export.
converter dwd epw tmy3 try weather weatherdata weatherdatacollection
Last synced: 21 Aug 2026
https://github.com/PoonLab/sierra-local
Retrieve HIVdb algorithm as XML and apply locally to HIV sequences
Last synced: 20 Aug 2026
https://github.com/sparks-baird/matbench-genmetrics
Generative materials benchmarking metrics, inspired by guacamol and CDVAE.
materials-informatics python
Last synced: 20 Aug 2026
https://github.com/the-rccg/hw2d
Reference implementation for the Hasegawa-Wakatani model of plasma turbulence inside nuclear fusion reactors in two dimensions
fluid-dynamics fluid-simulation fusion plasma-physics simulations
Last synced: 21 Aug 2026
https://github.com/JulianKarlBauer/mechkit
Continuum mechanics toolkit
continuum-mechanics mechanics mechanics-of-materials python
Last synced: 20 Aug 2026
https://github.com/easystats/see/
:art: Visualisation toolbox for beautiful and publication-ready figures
data-visualization easystats ggplot2 hacktoberfest plotting r rstats see statistics visualisation visualization
Last synced: 20 Aug 2026
https://github.com/ORNL/curifactory
An experiment workflow and organization tool.
Last synced: 21 Aug 2026
https://github.com/ryneches/SuchTree
A Python library for fast, thread-safe computations on phylogenetic trees
Last synced: 20 Aug 2026
https://github.com/AnkitBarik/planetMagFields
Routines to plot and analyze magnetic fields of planets in our solar system
magnetic-fields matplotlib planetary planetary-data planetary-science plotting python
Last synced: 20 Aug 2026
https://github.com/genotoul-bioinfo/Binette
A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.
bioinformatics-tool metagenomics metagenomics-binning microbiology
Last synced: 20 Aug 2026
https://github.com/lys-devel/lys
Interactive multi-dimensional data analysis and visualization
Last synced: 20 Aug 2026
https://github.com/schochastics/signnet
R package for signed networks
network-analysis signed-networks sna
Last synced: 20 Aug 2026
https://github.com/MarkusPic/intensity_duration_frequency_analysis
Heavy rainfall intensity as a function of duration and return period is defined according to DWA-A 531 (2012). This program reads rainfall measurement data and calculates the distribution of design rainfall as a function of both return period and duration, for durations up to 12 hours (and beyond) and return periods in the range 0.5 a ≤ Tₙ ≤ 100 a.
analysis design-rainfall duration duration-steps dwa dwa-a-531 dwd heavy-rain idf intensity-duration-frequency kostra measurement-data precipitation python rainfall return-period
Last synced: 21 Aug 2026
https://github.com/vavrines/Kinetic.jl
Universal modeling and simulation of fluid mechanics upon machine learning. From the Boltzmann equation, heading towards multiscale and multiphysics flows.
boltzmann-equation cfd deep-learning differential-equations finite-element-methods finite-volume fluid-dynamics julia kinetic-theory numerical-pdes pde plasma rarefied-gas-dynamics scientific-machine-learning sciml
Last synced: 20 Aug 2026
https://github.com/hetalang/heta-compiler
Software tool for the compilation of Heta-based QSP modeling platform
pharmacodynamics pharmacometrics qsp-modeling systems-biology systems-pharmacology
Last synced: 20 Aug 2026
https://github.com/UniNE-CHYN/mmappickle
Python 3 library to store memory mappable objects into pickle-compatible files
dictionary memory mmap python python-3 python-library python3
Last synced: 20 Aug 2026
https://github.com/cmstatr/cmstatr
An R Package for Statistical Analysis of Composite Material Data
composite-material-data cran data materials-science r statistical-analysis statistics
Last synced: 20 Aug 2026
https://github.com/BikeNetKit/superblockify
BikeNetKit Python package to partition urban street networks into Superblock-like neighborhoods
bicycle-network geospatial gis mobility network-analysis osmnx superblocks transportation-network urban-data-science urban-mobility urban-planning
Last synced: 20 Aug 2026
https://github.com/ABM4ALL/Melodie
A general framework for developing agent-based models in Python.
Last synced: 20 Aug 2026
https://gitlab.com/jason-rumengan/pyarma
PyArmadillo - linear algebra library for Python with MATLAB-like syntax - https://pyarma.sourceforge.io
BLAS C++ LAPACK Scientifc Computing linear algebra matlab python
Last synced: 21 Aug 2026
https://github.com/rrwick/Badread
a long read simulator that can imitate many types of read problems
Last synced: 20 Aug 2026
https://github.com/mdolab/pyoptsparse/
pyOptSparse is an object-oriented framework for formulating and solving nonlinear constrained optimization problems in an efficient, reusable, and portable manner.
Last synced: 20 Aug 2026
https://github.com/JeremyGelb/geocmeans
An R package to perform Spatial Fuzzy C-means
clustering cmeans fuzzy-classification-algorithms r spatial-analysis spatial-fuzzy-cmeans unsupervised-learning
Last synced: 20 Aug 2026
https://github.com/kutaslab/fitgrid
Multichannel event-related time-series regression modeling for EEG, MEG, and sensor array data
eeg python regression
Last synced: 20 Aug 2026
https://github.com/cbyrohl/scida
scida is an out-of-the-box analysis tool for large scientific datasets. It primarily supports the astrophysics community, focusing on cosmological and galaxy formation simulations using particles or unstructured meshes, as well as large observational datasets. This tool uses dask, allowing analysis to scale.
Last synced: 21 Aug 2026
https://github.com/ivadomed/ivadomed
Repository on the collaborative IVADO medical imaging project between the Mila and NeuroPoly labs.
Last synced: 20 Aug 2026
https://github.com/USEPA/SSN2
SSN2: Spatial Modeling on Stream Networks in R
Last synced: 20 Aug 2026
https://github.com/quanted/esat
EPA's Environmental Source Apportionment Toolkit (ESAT) python package
Last synced: 20 Aug 2026
https://github.com/Climdyn/qgs
A 2-layer quasi-geostrophic atmospheric model in Python. Can be coupled to a simple land or shallow-water ocean component.
atmospheric-models climate climate-variability meteorology numba ocean-atmosphere-model python
Last synced: 20 Aug 2026
https://github.com/ropensci/jagstargets
Reproducible Bayesian data analysis pipelines with targets and JAGS
bayesian high-performance-computing jags make r r-targetopia reproducibility rjags rstats rstats-package statistics targets
Last synced: 20 Aug 2026
https://github.com/HRDAG/verdata
Una herramienta para el uso y análisis de los datos de Conflicto armado en Colombia resultantes del proyecto conjunto JEP-CEV-HRDAG.
armed-conflict capture-recapture colombia multiple-imputation multiple-systems-estimation rstats
Last synced: 21 Aug 2026
https://github.com/fboehm/qtl2pleio
Testing pleiotropy vs. separate QTL in multiparental populations
multiparental-populations quantitative-genetics quantitative-trait
Last synced: 20 Aug 2026
https://github.com/mrazomej/AutoEncoderToolkit.jl
Julia package with several functions to train and analyze Autoencoder-based neural networks
Last synced: 20 Aug 2026
https://github.com/keurfonluu/toughio
Pre- and post-processing Python library for TOUGH
io postprocessing preprocessing tough2 tough3
Last synced: 20 Aug 2026
https://github.com/max-little/GRAPL
GRAPL: A computational library for nonparametric structural causal modelling, analysis and inference
Last synced: 21 Aug 2026
https://github.com/nla-group/fABBA
A Python library for the fast symbolic approximation of time series
dimensionality-reduction machine-learning symbolic-aggregate-approximation symbolic-representation time-series time-series-analysis time-series-classification time-series-clustering time-series-forecasting
Last synced: 21 Aug 2026
https://github.com/robashaw/libecpint
A C++ library for the efficient evaluation of integrals over effective core potentials.
Last synced: 20 Aug 2026
https://github.com/newcleo-dev-team/lbh15
Compilation of thermo-physical properties for lead/bismuth-based liquid metals for fast reactor technology
liquid-metal nuclear-reactor thermodynamic-properties
Last synced: 20 Aug 2026
https://github.com/JonasMoss/kdensity
An R package for kernel density estimation with parametric starts and asymmetric kernels.
asymmetric-kernels density-estimation kernel-density-estimation non-parametric
Last synced: 20 Aug 2026
https://github.com/metawards/MetaWards
MetaWards disease metapopulation analysis and modelling software. Professional geographical SIR model with a flexible plugin architecture to support complex scenario modelling
coronavirus covid covid-19 epidemic-model epidemic-simulations epidemics epidemiology epidemiology-analysis sir-model
Last synced: 20 Aug 2026
https://github.com/torchgan/torchgan/
Research Framework for easy and efficient training of GANs based on Pytorch
computer-vision deep-learning gans generative-adversarial-networks generative-model machine-learning neural-networks python python3 pytorch
Last synced: 20 Aug 2026
https://github.com/jannikmi/multivar_horner
python package implementing a multivariate Horner scheme for efficiently evaluating multivariate polynomials
evaluation factorization horner horner-scheme hornerscheme-solver math mathematics multivariate multivariate-polynomials polynomial polynomial-evaluation polynomials python python3
Last synced: 20 Aug 2026
https://github.com/uglymol/uglymol
Macromolecular viewer for crystallographers (WebGL)
ccp4 crystallography electron-density macromolecular-crystallography molecular-graphics webgl
Last synced: 20 Aug 2026
https://github.com/stammler/simframe
Python framework for setting up and running scientific simulations. It comes with a variety of integration schemes and some infrastructure of reading and writing data files.
differential-equations python science simulation
Last synced: 20 Aug 2026
https://github.com/zdelrosario/py_grama
Implementation of a grammar of model analysis
uq
Last synced: 20 Aug 2026
https://github.com/andr1976/HydDown
Hydrogen (or other pure species) depressurization calculations
blow-down coolprop depressurisation gas-phase heat-transfer pressure python relief-valve thermodynamics
Last synced: 20 Aug 2026
https://github.com/USCbiostats/xrnet
R Package for Hierarchical Regularized Regression to Incorporate External Data
Last synced: 20 Aug 2026
https://github.com/ppsp-team/PyNM
Lightweight Python implementation of Normative Modelling
Last synced: 20 Aug 2026
https://github.com/ornl-ndav/django-remote-submission
The django-remote-submission is an asynchronous task/job queue using Celery Distributed Task Queue and Redis in-memory data structure store as message broker.
Last synced: 20 Aug 2026
https://github.com/frycast/studentlife
Tidy handling and navigation of the valuable Student-Life mHealth dataset
Last synced: 20 Aug 2026
https://github.com/lebebr01/pdfsearch
Search pdf files for keywords.
keyword pdf r
Last synced: 20 Aug 2026
https://github.com/FAIRmat-NFDI/nomad
NOMAD lets you manage and share your materials science data in a way that makes it truly useful to you, your group, and the community.
Last synced: 20 Aug 2026
https://github.com/ComputationalPhysiology/simcardems
Simula Cardiac ElectroMechanics Solver
Last synced: 20 Aug 2026
https://github.com/ajohnson-uoregon/llvm-project/
The LLVM Project is a collection of modular and reusable compiler and toolchain technologies. Note: the repository does not accept github pull requests at this moment. Please submit your patches at http://reviews.llvm.org.
Last synced: 20 Aug 2026
https://github.com/rikhuijzer/SIRUS.jl
Interpretable Machine Learning via Rule Extraction
explainable-ai explainable-ml machine-learning
Last synced: 20 Aug 2026
https://github.com/UU-ER/AdOpT-NET0
AdOpT-NET0 - Advanced Optimization Tool for Networks and Energy Technologies
Last synced: 21 Aug 2026
https://github.com/UNCG-DAISY/psi-collect
Collect Post-Storm Imagery from NOAA
coastal hurricane imagery noaa storms
Last synced: 20 Aug 2026
https://github.com/spinicist/QUIT
A set of tools for processing Quantitative MR Images
Last synced: 20 Aug 2026
https://github.com/CosmiQ/CometTS
Comet Time Series Toolset for working with a time-series of remote sensing imagery and user defined polygons
Last synced: 20 Aug 2026
https://github.com/IMMM-SFA/naturf
NATURF: Neighborhood Adaptive Tissues for Urban Resilience Futures
Last synced: 21 Aug 2026
https://github.com/bobleesj/cifkit
High-throughput .cif analysis made easy. DOI: https://doi.org/10.21105/joss.07205
coordination-environment crystallography high-throughput site-analysis solid-state
Last synced: 20 Aug 2026
https://github.com/carnotresearch/cr-sparse
Functional models and algorithms for sparse signal processing
basis-pursuit compressive-sensing convex-optimization functional-programming jax l1-regularization lasso linear-operators sparse-bayesian-learning sparse-linear-systems sparse-representations wavelets
Last synced: 20 Aug 2026
https://github.com/sdtaylor/pyPhenology
Plant phenology models in python with a scikit-learn inspired API
ecology ecology-modelling plants science
Last synced: 20 Aug 2026
https://github.com/dhhagan/py-opc
Python wrapper for the Alphasense OPC-N2 built around py-spidev
Last synced: 20 Aug 2026
https://github.com/r3w0p/bobocep
A fault-tolerant Complex Event Processing engine designed for edge computing in Internet of Things systems.
complex-event-processing distributed-systems edge-computing fault-tolerance internet-of-things
Last synced: 20 Aug 2026
https://github.com/kahaaga/UncertainData.jl
Working efficiently with datasets where observations have associated uncertainties.
Last synced: 21 Aug 2026
https://github.com/ejikeugba/serp
Smooth Effects on Response Penalty for CLM
categorical-data ordinal-regression penalized-regression proportional-odds-regression regularization-techniques
Last synced: 20 Aug 2026
https://github.com/nci/scores/
scores: Metrics for the verification, evaluation and optimisation of forecasts, predictions or models.
climate contingency-table dask forecast-evaluation forecast-verification forecasting model-validation oceanography pandas python verification weather xarray
Last synced: 20 Aug 2026
https://github.com/ClapeyronThermo/GCIdentifier.jl
tools to perform group contribution (GC) identification, given the SMILES of a compound
group-contribution joback smiles-strings unifac
Last synced: 20 Aug 2026
https://github.com/dmey/synthia
📈 🐍 Multidimensional synthetic data generation with Copula and fPCA models in Python
augmentation climate copula data-augmentation data-generation data-generator data-modelling data-science dependency-analysis dependency-modeling finance fpca functional-data machine-learning oversampling principal-component-analysis statistics synthetic-data weather xarray
Last synced: 20 Aug 2026
https://github.com/ManuelRausch/StatConfR
Development of an R package for metacognition researchers
cognitive-modeling information-theory metacognition signal-detection-theory
Last synced: 21 Aug 2026
https://github.com/stenskjaer/samewords
Automatically annotate potentially ambiguous words in critical text editions made with LaTeX and reledmac.
Last synced: 20 Aug 2026
https://github.com/andyphilips/dynamac
Dynamic simulation and testing for single-equation ARDL models, available for both R and Stata
ardl r stata time-series time-series-analysis
Last synced: 20 Aug 2026
https://github.com/Heldenkombinat/Logodetect
Find logos in images and videos in just one-shot. Never be embarrassed again to say that you have a small data situation!
image-processing logo-detection object-detection one-shot-learning small-dataset video-processing
Last synced: 20 Aug 2026
https://github.com/graphnet-team/graphnet
A Deep learning library for neutrino telescopes
astrophysics deep-learning gpu graph-neural-network high-energy-physics machine-learning neural-network neutrino-oscillations neutrino-physics neutrinos particle-physics physics-analysis python pytorch
Last synced: 20 Aug 2026
https://github.com/fredstro/hilbertmodgroup
Implementation of Hilbert modular groups using SageMath
Last synced: 20 Aug 2026
https://gitlab.com/dlr-ve/esy/remix/framework
The REMix framework for energy system optimization models
Last synced: 21 Aug 2026
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