jagstargets

bayesian high-performance-computing jags make r r-targetopia reproducibility rjags rstats rstats-package statistics targets

Score: 9.653486547052037

Last synced: about 24 hours ago
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Repository metadata:

Reproducible Bayesian data analysis pipelines with targets and JAGS

Host: GitHub
URL: https://github.com/ropensci/jagstargets
Owner: ropensci
License: other
Created: 2020-12-13T13:52:27.000Z (over 5 years ago)
Default Branch: main
Last Pushed: 2024-12-03T12:25:13.000Z (over 1 year ago)
Last Synced: 2026-07-30T15:11:36.138Z (22 days ago)
Topics: bayesian, high-performance-computing, jags, make, r, r-targetopia, reproducibility, rjags, rstats, rstats-package, statistics, targets
Language: R
Homepage: https://docs.ropensci.org/jagstargets
Size: 613 KB
Stars: 11
Watchers: 2
Forks: 7
Open Issues: 0
Metadata Files:
- Readme: README.Rmd
- Changelog: NEWS.md
- Contributing: CONTRIBUTING.md
- License: LICENSE
- Codemeta: codemeta.json
- Zenodo: .zenodo.json

CodeMeta metadata:

@context: https://doi.org/10.5063/schema/codemeta-2.0
@type: SoftwareSourceCode
Identifier: jagstargets
Description: Bayesian data analysis usually incurs long runtimes and cumbersome custom code. A pipeline toolkit tailored to Bayesian statisticians, the 'jagstargets' R package is leverages 'targets' and 'R2jags' to ease this burden. 'jagstargets' makes it super easy to set up scalable JAGS pipelines that automatically parallelize the computation and skip expensive steps when the results are already up to date. Minimal custom code is required, and there is no need to manually configure branching, so usage is much easier than 'targets' alone. For the underlying methodology, please refer to the documentation of 'targets' and 'JAGS' (Plummer 2003) .
Name: jagstargets: Targets for JAGS Pipelines
Related link: https://docs.ropensci.org/jagstargets/
Code repository: https://github.com/ropensci/jagstargets
Issue tracker: https://github.com/ropensci/jagstargets/issues
License: https://spdx.org/licenses/MIT
Version: 1.1.0.9002
Programming language:
- @type: ComputerLanguage
- Name: R
- Url: https://r-project.org
Runtime platform: R version 4.3.2 (2023-10-31)
Provider:
- @id: https://cran.r-project.org
- @type: Organization
- Name: Comprehensive R Archive Network (CRAN)
- Url: https://cran.r-project.org
Author:
- - @type: Person
  - Given name:
    - William
    - Michael
  - Family name: Landau
  - Email: will.landau.oss@gmail.com
  - @id: https://orcid.org/0000-0003-1878-3253
Copyright holder:
- - @type: Organization
  - Name: Eli Lilly and Company
Maintainer:
- - @type: Person
  - Given name:
    - William
    - Michael
  - Family name: Landau
  - Email: will.landau.oss@gmail.com
  - @id: https://orcid.org/0000-0003-1878-3253
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- System requirements: JAGS 4.x.y (https://mcmc-jags.sourceforge.net)
File size: 266.732KB
Citation:
- - @type: ScholarlyArticle
  - Date published: 2021
  - Author:
    - - @type: Person
      - Given name:
        William
        Michael
      - Family name: Landau
  - Name: The jagstargets R package: a reproducible workflow framework for Bayesian data analysis with JAGS
  - Url: https://doi.org/10.21105/joss.03877
  - Pagination: 3877
  - Is part of:
    - @type: PublicationIssue
    - Issue number: 68
    - Date published: 2021
    - Is part of:
      - @type:
        PublicationVolume
        Periodical
      - Volume number: 6
      - Name: Journal of Open Source Software
Release notes: https://github.com/ropensci/jagstargets/blob/master/NEWS.md
Readme: https://github.com/ropensci/jagstargets/blob/main/README.md
Cont integration:
- https://github.com/ropensci/jagstargets/actions?query=workflow%3Acheck
- https://app.codecov.io/gh/ropensci/gittargets
- https://github.com/ropensci/jagstargets/actions?query=workflow%3Alint
Development status: https://www.repostatus.org/#active
Review:
- @type: Review
- Url: https://github.com/ropensci/software-review/issues/425
- Provider: https://ropensci.org
Keywords:
- r
- rstats
- reproducibility
- high-performance-computing
- bayesian
- jags
- rjags
- statistics
- targets
- make
- rstats-package
- r-targetopia

Owner metadata:

Name: rOpenSci
Login: ropensci
Email: info@ropensci.org
Kind: organization
Description:
Website: https://ropensci.org/
Location: Berkeley, CA
Twitter: rOpenSci
Company:
Icon url: https://avatars.githubusercontent.com/u/1200269?v=4
Repositories: 307
Last Synced at: 2023-03-10T20:30:59.242Z
Profile URL: https://github.com/ropensci

GitHub Events

Total

Create event: 2
Fork event: 1
Push event: 6
Release event: 2
Watch event: 2
Total: 13

Last Year

Total: 0

Committers metadata

Last synced: 2 days ago

Total Commits: 243
Total Committers: 6
Avg Commits per committer: 40.5
Development Distribution Score (DDS): 0.062

Commits in past year: 0
Committers in past year: 0
Avg Commits per committer in past year: 0.0
Development Distribution Score (DDS) in past year: 0.0

Name	Email	Commits
wlandau	w**u@g**m	228
wlandau	w**s@g**m	9
Maëlle Salmon	m**n@y**e	3
Jeroen Ooms	j**s@g**m	1
C198353-CA	3****A	1
David Lawrence Miller	g**b@n**t	1

Issue and Pull Request metadata

Last synced: 2 days ago

Total issues: 23
Total pull requests: 10
Average time to close issues: 28 days
Average time to close pull requests: about 11 hours
Total issue authors: 6
Total pull request authors: 5
Average comments per issue: 1.13
Average comments per pull request: 0.5
Merged pull request: 9
Bot issues: 0
Bot pull requests: 0

Past year issues: 0
Past year pull requests: 0
Past year average time to close issues: N/A
Past year average time to close pull requests: N/A
Past year issue authors: 0
Past year pull request authors: 0
Past year average comments per issue: 0
Past year average comments per pull request: 0
Past year merged pull request: 0
Past year bot issues: 0
Past year bot pull requests: 0

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/ropensci/jagstargets

Top Issue Authors

wlandau (16)
dill (3)
sachsmc (1)
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wlandau (1)
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Top Issue Labels

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type: bug (2)
topic: documentation (2)
order: 1 (1)
order: 3 (1)
order: 2 (1)
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Package metadata

Total packages: 1
Total downloads:
- cran: 235 last-month
Total dependent packages: 0
Total dependent repositories: 0
Total versions: 8
Total maintainers: 1

cran.r-project.org: jagstargets

Targets for JAGS Pipelines

Homepage: https://docs.ropensci.org/jagstargets/
Documentation: http://cran.r-project.org/web/packages/jagstargets/jagstargets.pdf
Licenses: MIT + file LICENSE
Latest release: 1.2.2 (published almost 2 years ago)
Last Synced: 2026-08-19T03:01:14.551Z (2 days ago)
Versions: 8
Dependent Packages: 0
Dependent Repositories: 0
Downloads: 235 Last month
Rankings:
- Forks count: 12.823%
- Stargazers count: 17.865%
- Average: 28.078%
- Dependent packages count: 29.797%
- Dependent repos count: 35.455%
- Downloads: 44.453%
Maintainers (1)
- will.landau.oss@gmail.com

Dependencies

DESCRIPTION cran

R >= 3.5.0 depends
R2jags >= 0.6.1 imports
coda >= 0.19.4 imports
digest >= 0.6.25 imports
fst >= 0.9.2 imports
posterior >= 1.0.1 imports
purrr >= 0.3.4 imports
qs >= 0.23.2 imports
rjags >= 4.10 imports
rlang >= 0.4.10 imports
stats * imports
tarchetypes >= 0.6.0 imports
targets >= 0.12.0 imports
tibble >= 3.0.1 imports
tools * imports
utils * imports
withr >= 2.1.2 imports
R.utils >= 2.10.1 suggests
dplyr >= 1.0.2 suggests
fs >= 1.5.0 suggests
knitr >= 1.30 suggests
rmarkdown >= 2.3 suggests
testthat >= 3.0.0 suggests
tidyr >= 1.1.2 suggests
visNetwork >= 2.0.9 suggests

.github/workflows/check.yaml actions

actions/checkout v3 composite
r-lib/actions/check-r-package v2 composite
r-lib/actions/setup-pandoc v2 composite
r-lib/actions/setup-r v2 composite
r-lib/actions/setup-r-dependencies v2 composite

.github/workflows/cover.yaml actions

actions/checkout v3 composite
r-lib/actions/setup-r v2 composite
r-lib/actions/setup-r-dependencies v2 composite

.github/workflows/lint.yaml actions

actions/checkout v3 composite
r-lib/actions/setup-r v2 composite
r-lib/actions/setup-r-dependencies v2 composite

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