https://github.com/athrom/CytobankAPIstats
Contains code and documentation for "CytobankAPIstats" library available on CRAN
Last synced: 22 Aug 2026
https://github.com/JuliaMusic/MIDI.jl
A Julia library for handling MIDI files
audio interface julia midi notes
Last synced: 22 Aug 2026
https://github.com/Romain-Thomas-Shef/dfitspy
FITS file header search and display
Last synced: 22 Aug 2026
https://github.com/climateequityreferenceproject/cerc-web
The web interface to the Climate Equity Reference Calculator (CERc)
climate-change climate-justice effort-sharing equity-calculator unfccc
Last synced: 22 Aug 2026
https://github.com/ucgmsim/GMSimViz
Automated 3D Visualization of Ground Motion Simulation with Generic Mapping Tools(GMT)
Last synced: 22 Aug 2026
https://github.com/mrecos/klrfome
Kernel Logistic Regression on Focal Mean Embeddings
archaeological-science kernel kernel-logistic-regression rstats spatial-analysis
Last synced: 22 Aug 2026
https://github.com/bjmorgan/pyscses
PYthon Space-Charge Site-Explicit Solver
Last synced: 22 Aug 2026
https://github.com/KVSlab/morphMan
A collection of tools for manipulation of morphological features in patient-specific geometries
biomedical geometric-algorithms morphology vascular
Last synced: 22 Aug 2026
https://github.com/garrettj403/QMix/
Simulate the behavior of SIS junctions
physics python radio-astronomy simulation sis-mixer
Last synced: 22 Aug 2026
https://github.com/3dct/open_iA
A tool for the visual analysis and processing of volumetric datasets, with a focus on industrial computed tomography.
Last synced: 22 Aug 2026
https://github.com/Hoosier-Clusters/clusim
An extended package for clustering similarity
Last synced: 22 Aug 2026
https://github.com/DistrictDataLabs/yellowbrick
Visual analysis and diagnostic tools to facilitate machine learning model selection.
anaconda estimator machine-learning matplotlib model-selection python scikit-learn visual-analysis visualization visualizer
Last synced: 22 Aug 2026
https://github.com/stablemarkets/ChiRP
Chinese Restaurant Process Models for Regression and Clustering. Master branch contains latest stable build.
bayesian bayesian-statistics nonparametric-regression nonparametric-statistics nonparametricbayes r
Last synced: 22 Aug 2026
https://github.com/CFSAN-Biostatistics/vcftoolz
Tools for working with Variant Call Format files.
Last synced: 22 Aug 2026
https://bitbucket.org/ocellarisproject/ocellaris
Ocellaris is a discontinuous Galerkin FEM solver for multiphase free surface flows using FEniCS and PETSc as the backends
Last synced: 22 Aug 2026
https://github.com/zabore/riskclustr
R package of functions for the study of etiologic heterogeneity
Last synced: 22 Aug 2026
https://github.com/kLabUM/rrcf
🌲 Implementation of the Robust Random Cut Forest algorithm for anomaly detection on streams
anomaly-detection detect-outliers machine-learning outliers python random-forest robust-random-cut-forest streaming-data tree
Last synced: 22 Aug 2026
https://github.com/ailiop/idvf
Iterative inversion of deformation vector field with adaptive bi-residual feedback control
Last synced: 22 Aug 2026
https://github.com/vallenderlab/MicrobiomeR
A comprehensive and customizable R package for microbiome analysis.
alpha-diversity beta-diversity bioinformatics color-palette comprehensive metacoder metagenomics microbial-genomics microbiology microbiome microbiome-analysis pcoa permanova phyloseq r rstats visualization
Last synced: 22 Aug 2026
https://github.com/mir-am/LightTwinSVM
LightTwinSVM Program - Simple and Fast Implementation of Standard TwinSVM Classifier
classification classifier clippdcd code implementation machine-learning pattern-recognition python svm-classifier twinsvm
Last synced: 22 Aug 2026
https://bitbucket.org/mpi4py/mpi4py-fft
mpi4py-fft is a Python package for computing Fast Fourier Transforms (FFTs).
Last synced: 22 Aug 2026
https://github.com/laempy/pyoints
Pyoints: A Python package for point cloud, voxel and raster processing.
Last synced: 22 Aug 2026
https://github.com/hiclib/iced
Normalizing Hi-C contact counts efficiently
i
Last synced: 22 Aug 2026
https://github.com/rrwick/Badread
a long read simulator that can imitate many types of read problems
Last synced: 22 Aug 2026
https://github.com/JuliaDiff/TaylorSeries.jl
Taylor polynomial expansions in one and several independent variables.
automatic-differentiation julia polynomials taylor-expansions
Last synced: 22 Aug 2026
https://github.com/Nance-Lab/diff_classifier
This project aims to take existing analyses of nanoparticle diffusion that I have worked on previously and expand the analysis to additional features.
Last synced: 22 Aug 2026
https://github.com/capytaine/capytaine
Python BEM solver for linear potential flow, based on Nemoh.
boundary-element-method fortran hydrodynamics potential-flow python sea-keeping water-wave wave-energy
Last synced: 22 Aug 2026
https://github.com/JuliaText/Embeddings.jl/
Functions and data dependencies for loading various word embeddings (Word2Vec, FastText, GLoVE)
Last synced: 22 Aug 2026
https://github.com/underworldcode/UWGeodynamics
Underworld Geodynamics
geodynamics geodynamics-models geophysics hacktoberfest hacktoberfest2020 underworld-modelling
Last synced: 22 Aug 2026
https://github.com/stenskjaer/samewords
Automatically annotate potentially ambiguous words in critical text editions made with LaTeX and reledmac.
Last synced: 22 Aug 2026
https://github.com/annoviko/pyclustering
pyclustering is a Python, C++ data mining library.
algorithms c-plus-plus clustering data-mining data-science machine-learning neural-networks oscillatory-networks python python3
Last synced: 22 Aug 2026
https://github.com/maximtrp/scikit-posthocs
Multiple Pairwise Comparisons (Post Hoc) Tests in Python
posthoc-comparisons posthoc-tests python scikit statistical-analysis statistics stats
Last synced: 22 Aug 2026
https://github.com/neurodsp-tools/neurodsp
Digital signal processing for neural time series.
Last synced: 22 Aug 2026
https://github.com/naturalis/wgs2ncbi
Toolkit for preparing genomes for submission to NCBI
bioinformatics dataset genome-annotation genomics
Last synced: 22 Aug 2026
https://github.com/KateHyoung/UTDEventData
An R package to retrieve political event data from the UTD API server
bigdata data-incentive political-event utd-server
Last synced: 22 Aug 2026
https://github.com/shawnbanasick/kade
KADE is an open-source application for the analysis of Q methodology data. See detailed description below. ⬇️
Last synced: 22 Aug 2026
https://github.com/zmeers/ggparliament
Simple parliament plots using ggplot2
dataviz ggplot2 parliament-charts r r-package seat-count visualization
Last synced: 22 Aug 2026
https://github.com/FranzKrah/rGUIDANCE
rGUIDANCE – alignment confidence score computation in R
Last synced: 22 Aug 2026
https://github.com/edifice1989/rocker-c-rex
Those source code are prepared to build a docker image of shiny web application
Last synced: 22 Aug 2026
https://github.com/PMEAL/porespy
A set of tools for characterizing and analyzing 3D images of porous materials
3d-images image-analysis porespy porous-materials porous-media python scientific-visualization tomography voxel-generator
Last synced: 22 Aug 2026
https://github.com/mviereck/x11docker
Run GUI applications and desktops in docker and podman containers. Focus on security.
containers desktop docker gpu gui html5 nerdctl podman printer pulseaudio sandbox sound ssh vnc wayland webcam x x11 xorg xpra
Last synced: 22 Aug 2026
https://github.com/justinalsing/dlmmc
Dynamical linear modeling (DLM) regression code for analysis of atmospheric time-series data.
Last synced: 22 Aug 2026
https://github.com/dpzwick/ppiclF/
A parallel particle-in-cell library in Fortran.
Last synced: 22 Aug 2026
https://github.com/ModelOriented/pyCeterisParibus
Python library for Ceteris Paribus Plots (What-if plots)
ceteris-paribus-plots explainable-ai python-library
Last synced: 22 Aug 2026
https://github.com/stulp/dmpbbo
Python/C++ library for Dynamical Movement Primitives and Black-Box Optimization
Last synced: 22 Aug 2026
https://github.com/jason-neal/eniric
Extended Near InfraRed spectra Information Content analysis.
astronomy doppler python3 radial-velocity spectroscopy
Last synced: 22 Aug 2026
https://github.com/abatten/fruitbat
A fast radio burst (FRB) redshift estimation package written in Python.
astronomy astrophysics dispersion dm frb measure python radio redshift
Last synced: 22 Aug 2026
https://github.com/vsoch/watchme
Reproducible watchers for research
changes cron reproducible watcher website
Last synced: 22 Aug 2026
https://github.com/mikahama/uralicNLP
An NLP library for Uralic languages such as Finnish, Skolt Sami, Moksha and so on. Also supporting some non-Uralic languages such as Spanish, French, Arabic, Swedish, Norwegian, Russian and English. LLMs, FSTs and More!
clustering conll-u constraint-grammar dutch finnish french fst german large-language-model lemmatizer llm moksha morphological-analysis morphological-generation nlp-library russian sami spanish swedish uralic-languages
Last synced: 22 Aug 2026
https://github.com/brandondube/prysm
physical optics: integrated modeling, phase retrieval, segmented systems, polynomials and fitting, sequential raytracing...
4d diffraction forbes-polynomial gpu-computing modeling mtf mtf-mapper optics phase-retrieval phasecam propagation psf python q-polynomial raytracing trioptics wavefront wavefront-sensing zernike zygo
Last synced: 22 Aug 2026
https://github.com/skyportal/skyportal
Collaborative platform for time-domain astronomy
astronomy collaborative-research lsst machine-learning transient-astronomy variable-stars
Last synced: 22 Aug 2026
https://github.com/davekinkead/reasons
Web based argument mapping tools
argument-mapping critical-thinking html logic
Last synced: 22 Aug 2026
https://github.com/AMReX-Codes/amrex
AMReX: Software Framework for Block Structured AMR
adaptive-mesh-refinement amr amrex high-performance-computing hpsf scientific-computing
Last synced: 22 Aug 2026
https://github.com/handley-lab/anesthetic
Nested Sampling post-processing and plotting
bayesian-inference fastkde matplotlib mcmc nested-sampling numpy pandas samples scipy
Last synced: 22 Aug 2026
https://github.com/EnvModellingGroup/hrds
Hierarchical raster data set: smooth interpolation of raster files at different resolutions for multiscale modelling
gis modelling numerical-modelling science-research
Last synced: 22 Aug 2026
https://github.com/RadioAstronomySoftwareGroup/pyuvsim/
A ultra-high precision package for simulating radio interferometers in python on compute clusters.
Last synced: 22 Aug 2026
https://github.com/tqdm/tqdm
:zap: A Fast, Extensible Progress Bar for Python and CLI
cli closember console discord gui jupyter keras meter pandas parallel progress progress-bar progressbar progressmeter python rate telegram terminal time utilities
Last synced: 22 Aug 2026
https://github.com/osorensen/hdme
R-package containing penalized regression methods for High-Dimensional Measurement Error problems (errors-in-variables)
Last synced: 22 Aug 2026
https://github.com/pyvista/pyvista
3D visualization and mesh analysis for science and engineering
3d finite-element-analysis finite-elements hacktoberfest mesh mesh-processing meshviewer plotting python scientific-visualization visualization vtk
Last synced: 22 Aug 2026
https://github.com/carterenyi/emviz
Visualize melodic patterns in MIDI files with arc diagrams.
algorithm arc-diagram carter-enyi matlab-runtime midi music
Last synced: 22 Aug 2026
https://github.com/MTgeophysics/mtpy
[DEPRECATED] Python toolbox for standard Magnetotelluric (MT) data analysis
Last synced: 22 Aug 2026
https://github.com/MAHDLab/rIP
Detecting Fraud in Online Surveys by Tracing, Scoring, and Visualizing IP Addresses
Last synced: 22 Aug 2026
https://github.com/adrena-lab/Optimising-Light-Source-Positioning
'Optimising Light Source Positioning for Even and Intense Illumination
Last synced: 22 Aug 2026
https://github.com/flor14/shinyssd
✨📦👩💻 shinyssd v1.0: Species Sensitivity Distributions for Ecotoxicological Risk Assessment - R-Shiny app
ecotoxicology r rstats shiny shinyapps species-sensitivity-distribution ssd-curves
Last synced: 22 Aug 2026
https://github.com/nelsonroque/tsfeaturex
Extract many time series features. Inspired by https://github.com/blue-yonder/tsfresh
Last synced: 22 Aug 2026
https://github.com/ropensci-archive/citesdb
:warning: ARCHIVED :warning: A high-performance database of shipment-level CITES trade data
dataset r r-package rstats wildlife
Last synced: 22 Aug 2026
https://gitlab.com/celliern/scikit-fdiff/
A 1D temporal partial differential equations solver
Last synced: 22 Aug 2026
https://github.com/KoesGroup/Snakemake_ChIPseq_PE
Pipeline for the analysis of PE ChIP-seq data
chip-seq-pipelines snakemake
Last synced: 22 Aug 2026
https://github.com/prmiles/pymcmcstat
Python implementation of MATLAB toolbox "mcmcstat"
adaptive-metropolis delayed-rejection markov-chain-monte-carlo mcmc metropolis-hastings python
Last synced: 22 Aug 2026
https://github.com/WMD-group/SMACT/
Python package to aid materials design and informatics
computational-chemistry machine-learning materials-design materials-informatics materials-science materials-screening python
Last synced: 22 Aug 2026
https://github.com/1313e/PRISM
An alternative to MCMC for rapid analysis of models
analysis-pipeline emulator model model-analysis python python3 regression
Last synced: 22 Aug 2026
https://github.com/MagneticParticleImaging/MPIFiles.jl
Julia Package for reading and writing MPI Files
julia mpi
Last synced: 22 Aug 2026
https://github.com/StingraySoftware/stingray
Anything can happen in the next half hour (including spectral timing made easy)!
astronomy astrophysics blackhole blackholes data-analysis fourier-analysis fourier-transform hacktoberfest neutronstars pulsars time-series time-series-analysis timeseries x-ray x-ray-binaries
Last synced: 22 Aug 2026
https://github.com/mfroeling/QMRITools
Processing and visualization tools for quantitative MRI data
bids denoising diffusion dixon dti extended-phase-graphs fasculation ivim jcoupling muscle nifti noise-suppression registration relaxometry simulation spectroscopy tractography visualization
Last synced: 22 Aug 2026
https://github.com/dahtah/imager
R package for image processing
cimg image-processing r
Last synced: 22 Aug 2026
https://github.com/nproellochs/ReinforcementLearning
This package performs model-free reinforcement learning in R.
experience-sampling r reinforcement-learning
Last synced: 22 Aug 2026
https://bitbucket.org/manuela_s/hcp/
HCP (HeatmapCovariatePlot) is an open-source Matlab package to generate publication-quality, highly customizable heatmaps annotated with continuous or categorical metadata variables.
Last synced: 22 Aug 2026
https://github.com/kgjerde/corporaexplorer
An R package for dynamic exploration of text collections
corpora corpus r shiny text-analysis
Last synced: 22 Aug 2026
https://github.com/underworldcode/stripy
2D spherical and Cartesian triangulation toolkit using tripack, stripack, srfpack and ssrfpack
fortran meshes python spherical-geometry triangulation-delaunay
Last synced: 22 Aug 2026
https://github.com/marshallward/f90nml
A Python module and command line tool for working with Fortran namelists
fortran namelist parser python
Last synced: 22 Aug 2026
https://github.com/opensim-org/SCONE
Open Source Software for Predictive Simulation of Biological Motion.
musculoskeletal-models optimization simulation tutorials
Last synced: 22 Aug 2026
https://github.com/CSBiology/FSharpGephiStreamer
F# functions for streaming any kind of graph/network data to the network visualization tool gephi
data-analysis exploratory-data-analysis fsharp gephi graph-visualization streaming-graph-data visualization
Last synced: 22 Aug 2026
https://github.com/delira-dev/delira
Lightweight framework for fast prototyping and training deep neural networks with PyTorch and TensorFlow
deep-learning delira machine-learning medical-images medical-imaging pytorch radiology tensorflow
Last synced: 22 Aug 2026
https://gitlab.com/QComms/cqptoolkit
Framework for controlling QKD devices and managing symmetric keys. See the [project page here](https://qcomms.gitlab.io/cqptoolkit/)
C++ physics quantum security
Last synced: 22 Aug 2026
https://github.com/university-of-southern-maine-physics/labjack-controller
Easily stream data from LabJack T4 and T7 devices.
data-collection labjack labjack-controller ljm python python3 streaming-data
Last synced: 22 Aug 2026
https://github.com/schuyler-smith/phylosmith/
functions for analyzing phyloseq data
Last synced: 22 Aug 2026
https://github.com/NASA-Planetary-Science/sbpy
A Python package for small bodies research
asteroids astronomy comets research
Last synced: 22 Aug 2026
https://github.com/peterjwatkins/diwanalr
diwanalr - an R package for data analysis related to diffusive-wave spectroscopy (DWS)
Last synced: 22 Aug 2026
https://github.com/connorourke/crystal_torture
crystal_torture: A crystal structure analysis code, allowing site tortuosity to be calculated.
Last synced: 22 Aug 2026
https://github.com/DrugowitschLab/VBLinLogit
Variational Bayes linear and logistic regression
linear-regression logistic-regression machine-learning variational-bayes
Last synced: 22 Aug 2026
https://github.com/fboehm/qtl2pleio
Testing pleiotropy vs. separate QTL in multiparental populations
multiparental-populations quantitative-genetics quantitative-trait
Last synced: 22 Aug 2026
https://github.com/OpenGeoVis/PVGeo
🌍 Python package of VTK-based algorithms to analyze geoscientific data and models
3d data-visualization geophysics geosciences model-building open-science paraview paraview-plugin python visual-data-integration visualization vtk
Last synced: 22 Aug 2026
https://github.com/rheiland/xml2jupyter
Generate Jupyter widgets (and a notebook) from a PhysiCell XML configuration file
Last synced: 22 Aug 2026
