JOSS: https://github.com/vallenderlab/MicrobiomeR
alpha-diversity beta-diversity bioinformatics color-palette comprehensive metacoder metagenomics microbial-genomics microbiology microbiome microbiome-analysis pcoa permanova phyloseq r rstats visualization
Score: 5.3230099791384085
Last synced: about 20 hours ago
JSON representation
Repository metadata:
A comprehensive and customizable R package for microbiome analysis.
- Host: GitHub
- URL: https://github.com/vallenderlab/MicrobiomeR
- Owner: vallenderlab
- License: mit
- Created: 2018-05-25T19:50:13.000Z (about 8 years ago)
- Default Branch: main
- Last Pushed: 2026-06-12T02:25:14.000Z (12 days ago)
- Last Synced: 2026-06-12T04:13:18.150Z (12 days ago)
- Topics: alpha-diversity, beta-diversity, bioinformatics, color-palette, comprehensive, metacoder, metagenomics, microbial-genomics, microbiology, microbiome, microbiome-analysis, pcoa, permanova, phyloseq, r, rstats, visualization
- Language: R
- Homepage: https://vallenderlab.github.io/MicrobiomeR/
- Size: 20.4 MB
- Stars: 24
- Watchers: 3
- Forks: 4
- Open Issues: 17
-
Metadata Files:
- Readme: README.md
- Changelog: NEWS.md
- Contributing: .github/CONTRIBUTING.md
- License: LICENSE
- Code of conduct: .github/CODE_OF_CONDUCT.md
- Citation: CITATION.cff
Owner metadata:
- Name: Vallender Lab
- Login: vallenderlab
- Email: vallenderlab@ummc.onmicrosoft.com
- Kind: organization
- Description: Data and software created and/or published by the Vallender Lab
- Website: https://vallenderlab.org
- Location:
- Twitter:
- Company:
- Icon url: https://avatars.githubusercontent.com/u/34803973?v=4
- Repositories: 2
- Last Synced at: 2023-02-27T20:08:39.019Z
- Profile URL: https://github.com/vallenderlab
GitHub Events
Total
- Issue comment event: 2
- Issues event: 1
- Pull request event: 2
- Push event: 2
- Watch event: 3
- Total: 10
Last Year
- Pull request event: 1
- Push event: 2
- Total: 3
Committers metadata
Last synced: 3 days ago
Total Commits: 845
Total Committers: 5
Avg Commits per committer: 169.0
Development Distribution Score (DDS): 0.342
Commits in past year: 1
Committers in past year: 1
Avg Commits per committer in past year: 1.0
Development Distribution Score (DDS) in past year: 0.0
| Name | Commits | |
|---|---|---|
| grabear | r****7@g****m | 556 |
| sdhutchins | m****s@g****m | 274 |
| sdhutchins | s****s@o****m | 10 |
| Shaurita Hutchins | s****2@u****u | 3 |
| grabear | r****e@g****m | 2 |
Issue and Pull Request metadata
Last synced: 9 days ago
Total issues: 42
Total pull requests: 61
Average time to close issues: 2 months
Average time to close pull requests: about 21 hours
Total issue authors: 8
Total pull request authors: 2
Average comments per issue: 4.36
Average comments per pull request: 1.41
Merged pull request: 54
Bot issues: 0
Bot pull requests: 0
Past year issues: 0
Past year pull requests: 1
Past year average time to close issues: N/A
Past year average time to close pull requests: N/A
Past year issue authors: 0
Past year pull request authors: 1
Past year average comments per issue: 0
Past year average comments per pull request: 0.0
Past year merged pull request: 0
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- grabear (26)
- sdhutchins (10)
- tulsijoishy (1)
- tboonf (1)
- ghost (1)
- avportal (1)
- sielerjm (1)
- cafferychen777 (1)
Top Pull Request Authors
- grabear (31)
- sdhutchins (30)
Top Issue Labels
- Status: In Progress :construction: :construction: (12)
- Type: Discussion :speech_balloon: (11)
- Type: Enhancement :heart: (10)
- Priority: Critical :fire::fire::fire::fire: (9)
- Type: Bug :beetle: :beetle: :beetle: :beetle: (7)
- Priority: Medium :fire::fire: (6)
- Type: Documentation :page_facing_up: (6)
- Status: Completed :checkered_flag::checkered_flag: (5)
- Type: Maintenance :wrench: (5)
- Status: Review Needed :eye: :eye: (5)
- Status: On Hold :zzz: :zzz: (4)
- Status: Available :seat: (4)
- Priority: High :fire::fire::fire: (4)
- Epic (3)
- Type: Feature 🎥 (3)
- Type: Question :question: (2)
- Priority: Low :fire: (2)
- Status: Help Wanted :sos: (2)
- :pushpin: Status: Pending :pushpin: (1)
- Status: Revision Needed :hammer_and_wrench: (1)
- :skull: Status: Abandoned :skull: (1)
- Beginner Friendly (1)
- Type: Duplicate :memo::memo::memo: (1)
Top Pull Request Labels
- Type: Maintenance :wrench: (9)
- Status: Review Needed :eye: :eye: (7)
- Type: Documentation :page_facing_up: (6)
- Priority: Critical :fire::fire::fire::fire: (6)
- Type: Feature 🎥 (5)
- Priority: High :fire::fire::fire: (4)
- Type: Enhancement :heart: (4)
- Priority: Medium :fire::fire: (3)
- Type: Bug :beetle: :beetle: :beetle: :beetle: (3)
- Status: In Progress :construction: :construction: (3)
- Epic (1)
- Status: Completed :checkered_flag::checkered_flag: (1)
- Priority: Low :fire: (1)