Ecosyste.ms: Summary

https://github.com/rikhuijzer/SIRUS.jl

Interpretable Machine Learning via Rule Extraction

explainable-ai explainable-ml machine-learning

Last synced: 22 Aug 2026

https://github.com/tenemark/mikecalsetup

Tool for automatic setting up calibration files for MIKE SHE models in PEST or OSTRICH

calibration mikeshe ostrich pest python

Last synced: 22 Aug 2026

https://github.com/FRBCesab/chessboard

:package: Create network connections based on chess moves

connectivity-matrix directed-networks neighborhood network one-dimensional-networks r-package spatial-networks two-dimensional-networks undirected-networks

Last synced: 22 Aug 2026

https://github.com/FAIRmat-NFDI/nomad

NOMAD lets you manage and share your materials science data in a way that makes it truly useful to you, your group, and the community.

Last synced: 22 Aug 2026

https://github.com/phpuech/OT_Analysis

Software for optical data force analysis / JPK Nanowizard

Last synced: 22 Aug 2026

https://github.com/copasi/basico

A simplified python interface to COPASI.

copasi python

Last synced: 22 Aug 2026

https://github.com/dglaeser/gridformat

Header-only C++-Library for grid file I/O

computational-grid input-output numerical-modeling simulation

Last synced: 22 Aug 2026

https://github.com/OrchardLANL/DPFEHM.jl

DPFEHM: A Differentiable Subsurface Flow Simulator

adjoint-method differentiable-programming subsurface-flow

Last synced: 22 Aug 2026

https://github.com/jhayer/baargin

Bacterial Assembly and Antimicrobial Resistance Genes In NextFlow

antimicrobial-resistance bacteria genomics nextflow-pipeline wgs workflow

Last synced: 22 Aug 2026

https://github.com/RangamaniLabUCSD/smart

Spatial Modeling Algorithms for Reactions and Transport

Last synced: 22 Aug 2026

https://gitlab.com/soleil-data-treatment/soleil-software-projects/qemu-web-desktop

DARTS/qemu-web-desktop: A web service that launches remote desktop virtual machines and displays them in your browser.

data analysis qemu remote-desktop virtualisation web service

Last synced: 22 Aug 2026

https://github.com/resurfemg-org/ReSurfEMG

An open source library for analysis of respiratory EMG

electromyogram electromyography healthcare-analysis

Last synced: 22 Aug 2026

https://github.com/uab-cgds-worthey/quac

🦆 Quality Control of WGS and exome samples 🦆

pipeline

Last synced: 22 Aug 2026

https://github.com/MJCliffe/PASCal

Codebase for PASCal strain calculator

Last synced: 22 Aug 2026

https://github.com/qiskit-community/qiskit-dynamics

DEPRECATED - Tools for building and solving models of quantum systems in Qiskit

Last synced: 22 Aug 2026

https://github.com/gesel-inc/gesel.js

Client-side gene set queries.

Last synced: 22 Aug 2026

https://github.com/mgcooper/baseflow

baseflow recession analysis toolbox

baseflow groundwater hydrology

Last synced: 22 Aug 2026

https://github.com/gmrandazzo/libscientific

Libscientific is a C framework for multivariate and other statistical analysis

Last synced: 22 Aug 2026

https://github.com/ORNL/curifactory

An experiment workflow and organization tool.

Last synced: 22 Aug 2026

https://github.com/hyosubkim/bayes-toolbox

bayes-toolbox

bayesian-inference bayesian-statistics kruschke probabilistic-programming python statistics

Last synced: 22 Aug 2026

https://github.com/SCIInstitute/UncertainSCI

Last synced: 22 Aug 2026

https://github.com/jet-net/JetNet

For developing and reproducing ML + HEP projects.

Last synced: 22 Aug 2026

https://github.com/nmfs-ost/SSMSE

Management Strategy Evaluation (MSE) using Stock Synthesis (SS3)

stock-synthesis

Last synced: 22 Aug 2026

https://github.com/damar-wicaksono/uqtestfuns

A Python3 library of test functions from the uncertainty quantification community with a common interface for validation and benchmarking purposes.

metamodeling python reliability-analysis sensitivity-analysis test-functions uncertainty-quantification

Last synced: 22 Aug 2026

https://github.com/Pele-Suite/PeleLMeX

An adaptive mesh hydrodynamics simulation code for low Mach number reacting flows without level sub-cycling.

amrex combustion gpu-acceleration low-mach-number pele

Last synced: 22 Aug 2026

https://github.com/kjschmidlab/GGoutlieR

Last synced: 22 Aug 2026

https://github.com/IlianPihlajamaa/ModeCouplingTheory.jl

A generic and fast solver of mode-coupling theory-like integrodifferential equations

differential-equations julia

Last synced: 22 Aug 2026

https://github.com/blind-contours/SuperNOVA

:dizzy: :dart: Automatic identification of variable and interaction importance using basis functions and non-parametric estimation of interactions/effect modification using joint stochastic interventions.

interactions machine-learning mixed-exposure statistics targeted-learning variable-importance

Last synced: 22 Aug 2026

https://github.com/JacksonBurns/astartes

Better Data Splits for Machine Learning

ai data-science machine-learning ml python sampling

Last synced: 22 Aug 2026

https://github.com/r-dcm/measr

R package for the Bayesian estimation of diagnostic classification models using Stan

bayesian cdm cmdstanr cognitive-diagnosis cognitive-diagnostic-models dcm diagnostic-classification-models psychometrics r r-package rstan rstats stan

Last synced: 22 Aug 2026

https://github.com/MikeSWang/Triumvirate

A Python/C++ package for three-point clustering measurements in LSS analyses

clustering-statistics cpp cuda cython hip large-scale-structure-cosmology python

Last synced: 22 Aug 2026

https://github.com/precice/micro-manager

A manager tool to facilitate two-scale coupling in multi-physics simulations using preCICE.

coupling macro-micro multiphysics multiscale research-and-development

Last synced: 22 Aug 2026

https://github.com/changliao1025/pyflowline

A mesh independent river network generator for hydrologic models

earth-system-model gis graph hydrology river

Last synced: 22 Aug 2026

https://github.com/JustinYKC/FEPOPS

Python implementation of the FEPOPS molecular descriptors

Last synced: 22 Aug 2026

https://github.com/dieghernan/tidyterra

tidyverse and ggplot2 methods for terra spatial objects

cran cran-r ggplot-extension r r-package r-spatial rspatial rstats rstats-package terra

Last synced: 22 Aug 2026

https://github.com/ToyotaCRDL/mahos

Measurement Automation Handling and Orchestration System

Last synced: 22 Aug 2026

https://github.com/OlivierBinette/er-evaluation

An End-to-End Evaluation Framework for Entity Resolution Systems

author-name-disambiguation data-science deduplication disambiguation duplicate-detection entity-resolution evaluation fuzzy-matching inventor-name-disambiguation matching ml-evaluation ml-testing record-linkage statistics

Last synced: 22 Aug 2026

https://github.com/spiketools/spiketools

Tools for analyzing spiking data from single-neuron recodings.

data-analysis neuroscience python single-unit spike-analysis spikes

Last synced: 22 Aug 2026

https://github.com/orbisgis/lczexplore

climate-change environment geoclimate r-spatial

Last synced: 22 Aug 2026

https://github.com/sandialabs/pvOps

A set of documented functions for supporting operations research of photovoltaic energy systems.

scr-2609 snl-data-analysis snl-visualization

Last synced: 22 Aug 2026

https://github.com/scikit-tda/DREiMac

Dimensionality Reduction with Eilenberg-MacLane Coordinates

dimensionality-reduction manifold-learning topological-data-analysis

Last synced: 22 Aug 2026

https://github.com/espnet/espnet

End-to-End Speech Processing Toolkit

chainer deep-learning end-to-end kaldi machine-translation pytorch singing-voice-synthesis speaker-diarization speech-enhancement speech-recognition speech-separation speech-synthesis speech-translation spoken-language-understanding text-to-speech voice-conversion

Last synced: 22 Aug 2026

https://github.com/introlab/opentera

OpenTera - Open TeleRehabilitation Server and Micro-Services

flask healthcare iot micro-services python redis rehab robotics sensors server telehealth teleoperation telepresence telerehabilitation twisted videoconference webrtc

Last synced: 22 Aug 2026

https://gitlab.com/habermann_lab/phasik

Scientific tools for extracting cyclic data via hierarchical clustering

Last synced: 22 Aug 2026

https://github.com/r3w0p/bobocep

A fault-tolerant Complex Event Processing engine designed for edge computing in Internet of Things systems.

complex-event-processing distributed-systems edge-computing fault-tolerance internet-of-things

Last synced: 22 Aug 2026

https://github.com/NLESC-JCER/QMCTorch

Pytorch Implementation of Real Space Quantum Monte Carlo Simulations of Molecular Systems

Last synced: 22 Aug 2026

https://github.com/2decomp-fft/2decomp-fft

The 2DECOMP&FFT library provides access to a slabs and pencil decompositions as well as FFTs.

fast-fourier-transform finite-difference-method pencil-decomposition

Last synced: 22 Aug 2026

https://github.com/NeotomaDB/neotoma2

Repository for the updated neotoma R package.

earthcube neotoma nsf paleoecology r rstats

Last synced: 22 Aug 2026

https://github.com/HoBeZwe/SphericalScattering.jl

This package provides semi-analytical solutions to the scattering of time harmonic and static electromagnetic fields from spherical objects.

dipole electromagnetics fitzgerald hertzian julia mie-scattering mie-series plane-wave ring-current scattering sphere spherical spherical-waves time-harmonic

Last synced: 22 Aug 2026

https://github.com/LMBooth/pybci

Create real-time BCI's with the LSL, PyTorch, SKLearn and TensorFlow packages.

bci brain-computer-interface hmi human-computer-interaction human-machine-interface labstreaminglayer lsl machine-learning python python-brain-computer-interface pytorch sklearn tensorflow

Last synced: 22 Aug 2026

https://github.com/jrkerns/pylinac

An image analysis library for medical physics

image-analysis image-processing medical-physics python radiation-oncology

Last synced: 22 Aug 2026

https://github.com/CyclotronResearchCentre/bidsme

Flexible bidsificator for multimodal datasets

bids brainvision dicom eeg mri-data nifti

Last synced: 22 Aug 2026

https://github.com/OpenWaterAnalytics/EPyT/

EPyT: An EPANET-Python Toolkit for Smart Water Network Simulations

epanet epanet-matlab-toolkit epanet-python-toolkit network python simulation water

Last synced: 22 Aug 2026

https://github.com/Box-Tools/BoxKit

A Python library to manage analysis of block-structured simulation datasets.

Last synced: 22 Aug 2026

https://github.com/UNSW-CEEM/NEMSEER

A package for downloading and handling forecasts for the National Electricity Market (NEM) from the Australian Energy Market Operator (AEMO).

aemo australia energy forecast national-electricity-market nem nemweb pasa pre-dispatch python

Last synced: 22 Aug 2026

https://github.com/sebastien-plutniak/archeoviz

Visualisation, Exploration, and Web Communication of Archaeological Spatial Data

archaeology archeology data-visualization r r-package rstats

Last synced: 22 Aug 2026

https://github.com/anderslogg/geco

A collection of solvers for the Einstein-Vlasov equations

axisymmetric einstein-vlasov fem fenics general-relativity vlasov-poisson

Last synced: 22 Aug 2026

https://github.com/pudu-py/pudu

A Python library for explainability of machine learinng algorithms in an agnostic, deterministic, and simple way.

Last synced: 22 Aug 2026

https://github.com/the-rccg/hw2d

Reference implementation for the Hasegawa-Wakatani model of plasma turbulence inside nuclear fusion reactors in two dimensions

fluid-dynamics fluid-simulation fusion plasma-physics simulations

Last synced: 22 Aug 2026

https://github.com/lys-devel/lys

Interactive multi-dimensional data analysis and visualization

Last synced: 22 Aug 2026

https://github.com/samirmartins/pydaq

Data Acquisition and Experimental Analysis with Python and Graphical User Interface

arduino arduino-library graphical-user-interface national-instruments nidaq nidaqmx pyside6 python real-datasets step-response

Last synced: 22 Aug 2026

https://github.com/jonescompneurolab/hnn-core

Simulation and optimization of neural circuits for MEG/EEG source estimates

computational-modeling eeg meg neuron-simulator

Last synced: 22 Aug 2026

https://github.com/cmelab/flowerMD

Flexible Library of Organic Workflows and Extensible Recipes for Molecular Dynamics.

hoomd-blue molecular-dynamics molecular-dynamics-simulation mosdef-hub polymer simulation

Last synced: 22 Aug 2026

https://github.com/NSAPH-Software/CRE

The Causal Rule Ensemble Method

Last synced: 22 Aug 2026

https://github.com/Libensemble/libensemble

A Python toolkit for coordinating asynchronous and dynamic ensembles of calculations.

Last synced: 22 Aug 2026

https://github.com/parafields/parafields

Parallel Parameter Field Generator for Python

hacktoberfest iwr-hacktoberfest

Last synced: 22 Aug 2026

https://github.com/adrientaudiere/MiscMetabar

R package MiscMetabar: Miscellaneous functions for metabarcoding analysis

amplicon amplicon-sequencing biodiversity-informatics ecology illumina metabarcoding ngs-analysis package r r-package visualization

Last synced: 22 Aug 2026

https://github.com/MaceKuailv/seaduck

A python package that interpolates data from ocean dataset from both Eulerian and Lagrangian perspective.

Last synced: 22 Aug 2026

https://github.com/OSeMOSYS/otoole

OSeMOSYS Tools for Energy

energy energy-system energy-system-modelling osemosys

Last synced: 22 Aug 2026

https://github.com/CederGroupHub/sparse-lm

Sparse Linear Regression Models

Last synced: 22 Aug 2026

https://github.com/pvlib/pvlib-python

A set of documented functions for simulating the performance of photovoltaic energy systems.

photovoltaic python renewable-energy renewables solar-energy

Last synced: 22 Aug 2026

https://github.com/xarray-contrib/xeofs

Comprehensive EOF analysis in Python with xarray: A versatile, multidimensional, and scalable tool for advanced climate data analysis

climate-science dask dimensionality-reduction eof-analysis pattern-recognition pca xarray

Last synced: 22 Aug 2026

https://github.com/castelao/GSW-rs

Unofficial Gibbs Sea Water Oceanographic Toolbox of TEOS-10 in Rust

data ocean ocean-sciences oceanography rust

Last synced: 22 Aug 2026

https://github.com/tuomaseerola/onsetsync

Onset synchrony functions

Last synced: 22 Aug 2026

https://github.com/QuantEcon/QuantEcon.py

A community based Python library for quantitative economics

computational-economics economics python

Last synced: 22 Aug 2026

https://github.com/HRDAG/verdata

Una herramienta para el uso y análisis de los datos de Conflicto armado en Colombia resultantes del proyecto conjunto JEP-CEV-HRDAG.

armed-conflict capture-recapture colombia multiple-imputation multiple-systems-estimation rstats

Last synced: 22 Aug 2026

https://github.com/materialsproject/jobflow

jobflow is a library for writing computational workflows.

workflows

Last synced: 22 Aug 2026

https://github.com/omeka-s-modules/Datascribe

An Omeka S module for the transcription of structured data.

omeka omeka-s

Last synced: 22 Aug 2026

https://github.com/unige-geohealth/inAccessMod

Last synced: 22 Aug 2026

https://github.com/rajarshi008/Scarlet

Tool for learning linear temporal logic formulas using combinatorial approach

Last synced: 22 Aug 2026

https://github.com/vivekjoshy/openskill.py

Multiplayer Rating System. No Friction.

elo openskill openskill-py pypy python ranking ranking-system rating rating-system

Last synced: 22 Aug 2026

https://github.com/EnergyEconomyDecoupling/CL-PFU-JOSS-Paper

Last synced: 22 Aug 2026

https://github.com/umr-amap/StormR

Funtions to quantify and map the tropical storms and cyclones’ winds characteristics'

cyclones-behaviour r tropical-storms

Last synced: 22 Aug 2026

https://github.com/gbouras13/dnaapler

Reorients assembled microbial sequences

Last synced: 22 Aug 2026

https://github.com/kstenio/libssa/

Laser Induced Breakdown Spectroscopy spectra analyser - LIBSsa

Last synced: 22 Aug 2026

https://github.com/DIDSR/WebXR-tools

Last synced: 22 Aug 2026

https://github.com/PhysioLabXR/PhysioLabXR-Community

Last synced: 22 Aug 2026

https://github.com/ropensci/dwctaxon

R package for working with Darwin Core Taxon data

database r-package rstats

Last synced: 22 Aug 2026

https://github.com/LiBuchauer/cellanneal

User-friendly bulk RNAseq deconvolution using simulated annealing

Last synced: 22 Aug 2026

https://github.com/SMTG-Bham/easyunfold

Band structure unfolding made easy!

ab-initio band-structure-unfolding computational-chemistry computational-materials-science defects dft disorder electronic-structure symmetry-breaking unfolding vasp