MiscMetabar

amplicon amplicon-sequencing biodiversity-informatics ecology illumina metabarcoding ngs-analysis package r r-package visualization

Score: 10.752098835720146

Last synced: about 2 hours ago
JSON representation

Repository metadata:

R package MiscMetabar: Miscellaneous functions for metabarcoding analysis

Host: GitHub
URL: https://github.com/adrientaudiere/MiscMetabar
Owner: adrientaudiere
License: gpl-3.0
Created: 2020-06-02T10:02:00.000Z (about 6 years ago)
Default Branch: master
Last Pushed: 2026-06-04T11:39:11.000Z (17 days ago)
Last Synced: 2026-06-04T13:20:34.289Z (17 days ago)
Topics: amplicon, amplicon-sequencing, biodiversity-informatics, ecology, illumina, metabarcoding, ngs-analysis, package, r, r-package, visualization
Language: R
Homepage: https://adrientaudiere.github.io/MiscMetabar/
Size: 419 MB
Stars: 21
Watchers: 2
Forks: 2
Open Issues: 1
Metadata Files:
- Readme: README.Rmd
- Changelog: NEWS.md
- Contributing: CONTRIBUTING.md
- License: LICENSE.md
- Code of conduct: CODE_OF_CONDUCT.md
- Audit: audits/.release-cache/MiscMetabar/document/2026-05-27T14-26-52Z.log
- Citation: citation.cff

Owner metadata:

Name: Adrien Taudiere
Login: adrientaudiere
Email:
Kind: user
Description: Professional website: https://adrientaudiere.com
Website: https://adrientaudiere.com
Location:
Twitter:
Company: IdEst
Icon url: https://avatars.githubusercontent.com/u/6680165?u=05279cc37858a09c01acb6e5cc298d457c49e421&v=4
Repositories: 9
Last Synced at: 2023-08-28T07:42:11.070Z
Profile URL: https://github.com/adrientaudiere

GitHub Events

Total

Create event: 9
Delete event: 1
Issue comment event: 5
Issues event: 2
Pull request event: 29
Pull request review event: 3
Push event: 59
Release event: 5
Watch event: 4
Total: 117

Last Year

Create event: 6
Delete event: 1
Issue comment event: 1
Issues event: 1
Pull request event: 25
Pull request review event: 3
Push event: 43
Release event: 2
Watch event: 2
Total: 84

Committers metadata

Last synced: about 1 month ago

Total Commits: 685
Total Committers: 6
Avg Commits per committer: 114.167
Development Distribution Score (DDS): 0.109

Commits in past year: 180
Committers in past year: 4
Avg Commits per committer in past year: 45.0
Development Distribution Score (DDS) in past year: 0.367

Name	Email	Commits
Adrien Taudiere	a**e@t**m	610
adrien	a**n@l**u	35
copilot-swe-agent[bot]	1****t	19
Adrien	a**n@p**e	12
adrien	a**n@l**u	8
Markus Ankenbrand	m**s@a**e	1

Issue and Pull Request metadata

Last synced: 6 months ago

Total issues: 19
Total pull requests: 121
Average time to close issues: 3 days
Average time to close pull requests: about 8 hours
Total issue authors: 9
Total pull request authors: 3
Average comments per issue: 2.16
Average comments per pull request: 0.02
Merged pull request: 111
Bot issues: 0
Bot pull requests: 0

Past year issues: 2
Past year pull requests: 27
Past year average time to close issues: 3 days
Past year average time to close pull requests: 1 day
Past year issue authors: 2
Past year pull request authors: 2
Past year average comments per issue: 1.0
Past year average comments per pull request: 0.0
Past year merged pull request: 22
Past year bot issues: 0
Past year bot pull requests: 0

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/adrientaudiere/MiscMetabar

Top Issue Authors

iimog (7)
tkchafin (4)
adrientaudiere (2)
gabyr2 (1)
ddsjoberg (1)
frederic-mahe (1)
Julie-lmq (1)
RachBioHaz (1)
garanceleroy (1)

Top Pull Request Authors

adrientaudiere (114)
Copilot (6)
iimog (1)

Top Issue Labels

Top Pull Request Labels

Package metadata

Total packages: 1
Total downloads:
- cran: 353 last-month
Total dependent packages: 0
Total dependent repositories: 0
Total versions: 11
Total maintainers: 1

cran.r-project.org: MiscMetabar

Miscellaneous Functions for Metabarcoding Analysis

Homepage: https://github.com/adrientaudiere/MiscMetabar
Documentation: http://cran.r-project.org/web/packages/MiscMetabar/MiscMetabar.pdf
Licenses: AGPL-3
Latest release: 0.16.8 (published 14 days ago)
Last Synced: 2026-06-09T14:45:13.106Z (12 days ago)
Versions: 11
Dependent Packages: 0
Dependent Repositories: 0
Downloads: 353 Last month
Rankings:
- Dependent packages count: 28.205%
- Dependent repos count: 36.159%
- Average: 49.705%
- Downloads: 84.75%
Maintainers (1)
- adrien.taudiere@zaclys.net

Dependencies

DESCRIPTION cran

R >= 3.5.0 depends
dada2 * depends
ggplot2 * depends
magrittr * depends
phyloseq * depends
lifecycle * imports
Biostrings * suggests
DECIPHER * suggests
DESeq2 * suggests
DT * suggests
circlize * suggests
edgeR * suggests
grid * suggests
gridExtra * suggests
here * suggests
lulu * suggests
metacoder * suggests
methods * suggests
mixtools * suggests
multcompView * suggests
networkD3 * suggests
pbapply * suggests
plyr * suggests
reshape2 * suggests
speedyseq * suggests
testthat >= 3.0.0 suggests
vegan * suggests
venneuler * suggests
viridis * suggests

.github/workflows/pkgdown.yaml actions

JamesIves/github-pages-deploy-action v4.4.1 composite
actions/checkout v3 composite
r-lib/actions/setup-pandoc v2 composite
r-lib/actions/setup-r v2 composite
r-lib/actions/setup-r-dependencies v2 composite

.github/workflows/R-CMD-check.yaml actions

actions/checkout v3 composite
r-lib/actions/check-r-package v2 composite
r-lib/actions/setup-pandoc v2 composite
r-lib/actions/setup-r v2 composite
r-lib/actions/setup-r-dependencies v2 composite

.github/workflows/draft-pdf.yaml actions

actions/checkout v3 composite
actions/upload-artifact v1 composite
openjournals/openjournals-draft-action master composite

.github/workflows/test-coverage.yaml actions

actions/checkout v3 composite
actions/upload-artifact v3 composite
r-lib/actions/setup-r v2 composite
r-lib/actions/setup-r-dependencies v2 composite

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