dnaapler

Score: 12.20061779484721

Last synced: about 9 hours ago
JSON representation

Repository metadata:

Reorients assembled microbial sequences

Host: GitHub
URL: https://github.com/gbouras13/dnaapler
Owner: gbouras13
License: mit
Created: 2022-10-12T07:42:07.000Z (almost 4 years ago)
Default Branch: main
Last Pushed: 2026-06-30T06:13:49.000Z (about 2 months ago)
Last Synced: 2026-07-30T14:59:27.144Z (16 days ago)
Language: Python
Homepage:
Size: 30.6 MB
Stars: 143
Watchers: 3
Forks: 6
Open Issues: 5
Metadata Files:
- Readme: README.md
- Changelog: HISTORY.md
- Contributing: CONTRIBUTING.md
- License: LICENSE
- Code of conduct: CODE_OF_CONDUCT.md
- Authors: AUTHORS.md

Owner metadata:

Name: George Bouras
Login: gbouras13
Email:
Kind: user
Description: Bioinformatics at the Basil Hetzel Institute, University of Adelaide. Phages, microbes and more. george.bouras@adelaide.edu.au
Website:
Location: Adelaide, SA
Twitter: GB13Faithless
Company:
Icon url: https://avatars.githubusercontent.com/u/84495559?v=4
Repositories: 8
Last Synced at: 2023-03-06T00:24:09.203Z
Profile URL: https://github.com/gbouras13

GitHub Events

Total

Create event: 8
Delete event: 4
Fork event: 3
Issue comment event: 29
Issues event: 6
Pull request event: 24
Pull request review event: 1
Push event: 42
Release event: 5
Watch event: 28
Total: 150

Last Year

Create event: 1
Delete event: 1
Issue comment event: 2
Pull request event: 3
Push event: 5
Release event: 1
Watch event: 3
Total: 16

Committers metadata

Last synced: 1 day ago

Total Commits: 268
Total Committers: 7
Avg Commits per committer: 38.286
Development Distribution Score (DDS): 0.09

Commits in past year: 15
Committers in past year: 2
Avg Commits per committer in past year: 7.5
Development Distribution Score (DDS) in past year: 0.067

Name	Email	Commits
gbouras13	g**s@a**u	244
Ryan Wick	r**k@g**m	14
Vijini Mallawaarachchi	v**i@g**m	5
Sam Nooij	s****j	2
Michael Roach	b**e@g**m	1
Michael Hall	m**l@m**h	1
Antônio Camargo	a****o	1

Issue and Pull Request metadata

Last synced: 5 days ago

Total issues: 34
Total pull requests: 84
Average time to close issues: about 1 month
Average time to close pull requests: about 17 hours
Total issue authors: 25
Total pull request authors: 8
Average comments per issue: 2.97
Average comments per pull request: 0.35
Merged pull request: 80
Bot issues: 0
Bot pull requests: 0

Past year issues: 4
Past year pull requests: 5
Past year average time to close issues: 4 months
Past year average time to close pull requests: 9 days
Past year issue authors: 4
Past year pull request authors: 3
Past year average comments per issue: 1.0
Past year average comments per pull request: 1.0
Past year merged pull request: 3
Past year bot issues: 0
Past year bot pull requests: 0

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/gbouras13/dnaapler

Top Issue Authors

mkerin (4)
gbouras13 (3)
schorlton-bugseq (2)
vinisalazar (2)
MostafaYA (2)
erinyoung (2)
valentynbez (1)
jsgounot (1)
jchorl (1)
samnooij (1)
oschwengers (1)
jolespin (1)
alexweisberg (1)
KR0manova (1)
MonicaSteffi (1)

Top Pull Request Authors

gbouras13 (72)
rrwick (4)
Vini2 (2)
apcamargo (2)
mbhall88 (1)
MrTomRod (1)
samnooij (1)
beardymcjohnface (1)

Top Issue Labels

enhancement (7)
question (2)
bug (2)

Top Pull Request Labels

Package metadata

Total packages: 2
Total downloads:
- pypi: 191 last-month
Total dependent packages: 0 (may contain duplicates)
Total dependent repositories: 0 (may contain duplicates)
Total versions: 38
Total maintainers: 1

proxy.golang.org: github.com/gbouras13/dnaapler

Homepage:
Documentation: https://pkg.go.dev/github.com/gbouras13/dnaapler#section-documentation
Licenses: mit
Latest release: v1.4.0 (published about 2 months ago)
Last Synced: 2026-08-14T00:01:01.273Z (1 day ago)
Versions: 19
Dependent Packages: 0
Dependent Repositories: 0
Rankings:
- Dependent packages count: 4.926%
- Average: 5.091%
- Dependent repos count: 5.257%

pypi.org: dnaapler

Reorients assembled microbial sequences

Homepage:
Documentation: https://dnaapler.readthedocs.io/
Licenses: MIT
Latest release: 1.4.0 (published about 2 months ago)
Last Synced: 2026-08-13T00:10:15.089Z (2 days ago)
Versions: 19
Dependent Packages: 0
Dependent Repositories: 0
Downloads: 191 Last month
Rankings:
- Dependent packages count: 7.285%
- Stargazers count: 15.378%
- Average: 23.632%
- Forks count: 30.47%
- Dependent repos count: 41.394%
Maintainers (1)
- gbouras13

Dependencies

.github/workflows/ci.yaml actions

actions/checkout v3 composite
codecov/codecov-action v3 composite
conda-incubator/setup-miniconda v2 composite

.github/workflows/release.yaml actions

actions/checkout v2 composite
conda-incubator/setup-miniconda v2 composite
pypa/gh-action-pypi-publish master composite

build/environment.yaml pypi

poetry.lock pypi

biopython 1.81
black 23.3.0
click 8.1.3
colorama 0.4.6
coverage 7.2.6
exceptiongroup 1.1.1
flake8 5.0.4
iniconfig 2.0.0
isort 5.12.0
loguru 0.7.0
mccabe 0.7.0
mypy-extensions 1.0.0
numpy 1.24.3
packaging 23.1
pandas 2.0.2
pathspec 0.11.1
platformdirs 3.5.1
pluggy 1.0.0
pycodestyle 2.9.1
pyflakes 2.5.0
pyrodigal 2.1.0
pytest 7.3.1
pytest-cov 4.1.0
python-dateutil 2.8.2
pytz 2023.3
pyyaml 6.0
six 1.16.0
tomli 2.0.1
typing-extensions 4.6.2
tzdata 2023.3
win32-setctime 1.1.0

pyproject.toml pypi

black >=22.3.0 develop
flake8 >=3.0.1 develop
isort >=5.10.1 develop
pytest >=6.2.5 develop
pytest-cov >=3.0.0 develop
biopython >=1.76
click >=8.0.0
loguru >=0.5.3
pandas >=1.4.2
pyrodigal >=2.0.0
python >=3.8,<4.0
pyyaml >=6.0

requirements.txt pypi

Click >=8.0.0
biopython >=1.76
loguru >=0.5.3
pandas >=1.4.1
pyrodigal >=2.0.0
pytest >=6.2.5
pytest-cov >=3.0.0
pytest-runner >=5.0.0
pyyaml >=6.0

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