https://github.com/nikivanstein/GSAreport
Global Sensitivity reporting for Explainable AI
explainable-ai machine-learning python sensitivity-analysis
Last synced: 22 Aug 2026
https://github.com/nathanael-fijalkow/DeepSynth
DeepSynth is a general-purpose program synthesizer in the programming by example framework: the user provides a few examples as pairs of input and output, DeepSynth finds a program matching the examples.
Last synced: 22 Aug 2026
https://github.com/pymedphys/pymedphys
A community effort to develop an open standard library for Medical Physics in Python. Building quality transparent software together via peer review and open source distribution. Open code is better science.
dicom medical-physics radiation-oncology radiation-physics radiation-therapy radiotherapy
Last synced: 22 Aug 2026
https://github.com/moead-framework/framework
MOEA/D is a general-purpose algorithm framework. It decomposes a multi-objective optimization problem into a number of single-objective optimization sub-problems and then uses a search heuristic to optimize these sub-problems simultaneously and cooperatively.
framework modular-framework moea moead multi-objective multi-objective-optimization operations-research pypi python
Last synced: 22 Aug 2026
https://github.com/jfowkes/pycutest
Python interface to CUTEst
optimization-tools
Last synced: 22 Aug 2026
https://github.com/prioritizr/wdpar
Interface to the World Database on Protected Areas
biodiversity conservation cran data database protected-areas r r-package rstats spatial
Last synced: 22 Aug 2026
https://github.com/jmejia8/Metaheuristics.jl
High-performance metaheuristics for optimization coded purely in Julia.
constrained-optimization decision-making differential-evolution hypervolume multi-objective-optimization nsga2 optimization pso simulated-annealing
Last synced: 22 Aug 2026
https://github.com/riatelab/osrm/
Interface between R and the OpenStreetMap-based routing service OSRM
cran openstreetmap osrm r r-package shortest-paths travel
Last synced: 22 Aug 2026
https://github.com/lanl/scico
Scientific Computational Imaging COde
admm computational-imaging convex-optimization fista inverse-problems jax optimization plug-and-play-priors proximal-algorithms proximal-operators total-variation
Last synced: 22 Aug 2026
https://github.com/Qiskit/rustworkx
A high performance Python graph library implemented in Rust.
dag graph graph-theory python rust
Last synced: 22 Aug 2026
https://github.com/klb2/qmkpy
Python testbed for the Quadratic Multiple Knapsack Problem (QMKP)
knapsack-problem multiple-knapsack-problem operations-research optimization python qmkp qmkpy quadractic-multiple-knapsack-problem quadratic-knapsack-problem
Last synced: 22 Aug 2026
https://github.com/RECETOX/MSMetaEnhancer
Tool for mass spectra metadata annotation.
annotations hacktoberfest mass-spectrometry python usegalaxy
Last synced: 22 Aug 2026
https://github.com/Beuth-Erdelt/DBMS-Benchmarker
DBMS-Benchmarker is a Python-based application-level blackbox benchmark tool for Database Management Systems (DBMS). It connects to a given list of DBMS (via JDBC) and runs a given list of parametrized and randomized (SQL) benchmark queries. Evaluations are available via a Python interface and on an interactive multi-dimensional dashboard.
agplv3 benchmarking dbms jdbc python sql
Last synced: 22 Aug 2026
https://github.com/bancaditalia/black-it/
Black-box abm calibration kit by the Bank of Italy
agent-based agent-based-modeling agent-based-simulation calibration-toolbox optimization
Last synced: 22 Aug 2026
https://github.com/kevin218/Eureka
Eureka! is a data reduction and analysis pipeline intended for time-series observations with JWST and HST.
exoplanets jwst python
Last synced: 22 Aug 2026
https://gitlab.com/ags-data-format-wg/ags-python-library
[Documentation](https://ags-data-format-wg.gitlab.io/ags-python-library/index.html) | A library to read and write AGS files using Pandas DataFrames
Geotechnics geology geospatial geotechnical openml python
Last synced: 22 Aug 2026
https://github.com/LTLA/basilisk
Clone of the Bioconductor repository for the basilisk package.
bioconductor-package
Last synced: 22 Aug 2026
https://github.com/BirolLab/btllib
📚Bioinformatics Technology Lab common code library
algorithms bioinformatics bloom-filter cpp data-structures genome library python
Last synced: 22 Aug 2026
https://github.com/chmarti1/PYroMat
PYroMat thermodynamic properties in Python
python thermodynamic-properties thermodynamics
Last synced: 22 Aug 2026
https://github.com/DominiqueMaucieri/quadcleanR
quadcleanR: A customizable tool to clean up ecological data collected from quadrats.
Last synced: 22 Aug 2026
https://github.com/giotto-ai/giotto-deep
Deep learning made topological.
computational-geometry deep-learning image-processing nlp pytorch tda
Last synced: 22 Aug 2026
https://github.com/ashleychontos/pySYD
automated measurements of global asteroseismic parameters
asteroseismology fundamental-stellar-properties k2 kepler python stars tess
Last synced: 22 Aug 2026
https://github.com/cwentland0/perform
One-dimensional unsteady compressible reacting flow simulation framework, designed for simple prototyping and testing of novel reduced-order model methods.
reacting-flow-simulations reduced-order-modeling
Last synced: 22 Aug 2026
https://github.com/minaskar/pocomc
pocoMC: A Python implementation of Preconditioned Monte Carlo for accelerated Bayesian Computation
astronomy astrophysics bayesian-inference black-box-bayesian-inference cosmology cosmology-inference general-purpose inference machine-learning mcmc mcmc-sampler normalizing-flows probabilistic-data-analysis python sampling sampling-methods smc
Last synced: 22 Aug 2026
https://github.com/Ajstros/pyripherals
Python solution for communicating with peripheral ICs
Last synced: 22 Aug 2026
https://github.com/watts-dev/watts
Workflow and Template Toolkit for Simulation (WATTS)
mcnp nuclear-energy openmc python simulation templates workflow-automation
Last synced: 22 Aug 2026
https://github.com/zizroc/villager
villager is an extensible agent based modeling (ABM) framework for the R language. It supports agents, agent aggregations and their associated resources, as well as flexible data management.
abm agent-based-modeling simulation
Last synced: 22 Aug 2026
https://github.com/IMMM-SFA/tell
A model to predict Total ELectricity Loads (TELL)
Last synced: 22 Aug 2026
https://github.com/brainets/frites
Framework for Information Theoretical analysis of Electrophysiological data and Statistics
brainhack brainhack-marseille brainweb cluster-based electrophysiological-data ffx functional-connectivity gaussian-copula group-level information-theory institut-neurosciences-timone neurophysiological-data rfx statistics
Last synced: 22 Aug 2026
https://github.com/cgrudz/DataAssimilationBenchmarks.jl
Package Information and Documentation
Last synced: 22 Aug 2026
https://github.com/ggonnella/fastsubtrees
Python library and command line script , for fast extraction of subtrees of fairly large trees, consisting of millions of nodes, such as the NCBI taxonomy tree.
bioinformatics ncbi-taxonomy python subtree subtree-extraction subtree-query taxonomy tree
Last synced: 22 Aug 2026
https://gitlab.com/petsc/petsc
PETSc, pronounced PET-see (the S is silent), is a suite of data structures and routines for the scalable (parallel) solution of scientific applications modeled by partial differential equations.
Last synced: 22 Aug 2026
https://github.com/jonathanHuwP/CrystalGrowthTracker
Extract face growth rate data from x-ray video of growing crystals.
Last synced: 22 Aug 2026
https://github.com/kavir1698/EvoDynamics.jl
Simulation of eco-evolutionary dynamics on multi-trait networks
Last synced: 22 Aug 2026
https://github.com/Natsiopoulos/ARDL
ARDL, ECM and Bounds-Test for Cointegration
Last synced: 22 Aug 2026
https://github.com/ConnorDonegan/geostan
Bayesian spatial analysis
bayesian bayesian-inference bayesian-statistics epidemiology modeling public-health r r-package rspatial rstats spatial stan
Last synced: 22 Aug 2026
https://github.com/SotaYoshida/NuclearToolkit.jl
NuclearToolkit.jl: Julia package for nuclear structure calculations
Last synced: 22 Aug 2026
https://github.com/masadcv/FastGeodis
Fast Implementation of Generalised Geodesic Distance Transform for CPU (OpenMP) and GPU (CUDA)
deep-learning gpu pytorch
Last synced: 22 Aug 2026
https://github.com/dunnkers/fseval
Benchmarking framework for Feature Selection and Feature Ranking algorithms 🚀
automl benchmarking benchmarking-framework benchmarks feature-rankers feature-ranking feature-selection hydra machine-learning python scikit-learn wandb
Last synced: 22 Aug 2026
https://github.com/tensorly/viz
Easy visualization and evaluation of matrix and tensor factorization models
tensor-methods tensorly tensors visualization
Last synced: 22 Aug 2026
https://github.com/AP6YC/ClusterValidityIndices.jl
A Julia package for Cluster Validity Indices (CVIs).
clustering julia julia-language machine-learning
Last synced: 22 Aug 2026
https://github.com/ICAMS/strucscan
A lightweight python-based framework for high-throughput material simulation
Last synced: 22 Aug 2026
https://github.com/NorwegianVeterinaryInstitute/ALPPACA
A tooL for Prokaryotic Phylogeny And Clustering Analysis
clustering nextflow phylogeny pipeline
Last synced: 22 Aug 2026
https://github.com/milnus/Corekaburra
Program to find core gene consensus synteny, hotspots between these, and construct spatially aware multiple sequence alignments of core genes
Last synced: 22 Aug 2026
https://gitlab.com/wpettersson/kep_solver
A Python package for reading and solving single instances of kidney exchange problems.
Last synced: 22 Aug 2026
https://github.com/SMTG-Bham/ShakeNBreak
Defect structure-searching employing chemically-guided bond distortions
ab-initio computational-chemistry dft distortions materials materials-design materials-informatics point-defects pymatgen python3 science semiconductors structure-searching symmetry-breaking vasp
Last synced: 22 Aug 2026
https://github.com/pydemull/activAnalyzer
accelerometer actigraph app monitor r shiny
Last synced: 22 Aug 2026
https://github.com/txopen/histoc
Histocompatibility analysis performed by kidney allocation systems for transplantation
Last synced: 22 Aug 2026
https://github.com/RemoteSensingTools/vSmartMOM.jl
A full end-to-end modular software suite for radiative transfer and related atmospheric analysis
gpu-acceleration radiative-transfer remote-sensing scattering-physics
Last synced: 22 Aug 2026
https://github.com/kathlandgren/SWAMPE
2D spectral-core shallow-water exoplanet atmosphere model
Last synced: 22 Aug 2026
https://github.com/ppsp-team/PyNM
Lightweight Python implementation of Normative Modelling
Last synced: 22 Aug 2026
https://github.com/lmiconsulting/cosasi/
COntagion Simulation And Source Identification: a Python package for graph diffusion source inference
cyber disease-simulation epidemics graph-algorithms graph-theory message-passing network-analysis network-science python
Last synced: 22 Aug 2026
https://github.com/vyrjana/DearEIS
A GUI program for analyzing, simulating, and visualizing impedance spectra.
electrochemistry impedance impedance-spectroscopy python
Last synced: 22 Aug 2026
https://github.com/Eden-Kramer-Lab/spectral_connectivity
Frequency domain estimation and functional and directed connectivity analysis tools for electrophysiological data
brain-connectivity canonical-coherence coherence connectivity-measures electrophysiology frequency-domain global-coherence multitaper neuroscience phase-lag-index python spectral-granger-causality spectrogram
Last synced: 22 Aug 2026
https://github.com/terminological/dtrackr
An R library for managing and documenting dplyr data pipelines
Last synced: 22 Aug 2026
https://gitlab.com/InspectorCell/inspectorcell
InspectorCell provides an efficient workflow and graphical interface to generate high-quality training datasets from highly multiplexed microscopy images.
Last synced: 22 Aug 2026
https://github.com/SYalouz/QuantNBody
QuantNBody : a python package for quantum chemistry/physics to manipulate many-body operators and wave functions.
Last synced: 22 Aug 2026
https://github.com/danielenricocahall/elephas
Distributed Deep learning with Keras & Spark
Last synced: 22 Aug 2026
https://github.com/dianna-ai/dianna
Deep Insight And Neural Network Analysis
explainable-artificial-intelligence scientific-research
Last synced: 22 Aug 2026
https://github.com/quantling/pyndl
pyndl implements a Naive discriminative learning which is a learning and classification models based on the Rescorla-Wagner equations in python3.
Last synced: 22 Aug 2026
https://github.com/siavashk/pycpd
Pure Numpy Implementation of the Coherent Point Drift Algorithm
expectation-maximization point-cloud python registration
Last synced: 22 Aug 2026
https://github.com/freqtrade/freqtrade
Free, open source crypto trading bot
algorithmic-trading bitcoin cryptocurrencies cryptocurrency freqtrade python telegram-bot trade trading-bot
Last synced: 22 Aug 2026
https://github.com/CliMA/EnsembleKalmanProcesses.jl
Derivative-free parameter calibration and uncertainty quantification for expensive models using ensemble Kalman methods
bayesian-inference calibration data-assimilation derivative-free-optimization ensemble-kalman-filter ensemble-kalman-inversion inverse-problems julia machine-learning optimization parameter-estimation scientific-computing uncertainty-quantification
Last synced: 22 Aug 2026
https://github.com/mmore500/hstrat
hstrat enables phylogenetic inference on distributed digital evolution populations
Last synced: 22 Aug 2026
https://github.com/JuliaSmoothOptimizers/PDENLPModels.jl
A NLPModel API for optimization problems with PDE-constraints
Last synced: 22 Aug 2026
https://github.com/jjmccollum/teiphy
A Python package for converting TEI XML collations to NEXUS, BEAST 2.7 XML, and other formats
nexus phylogenetics python tei-xml text-encoding
Last synced: 22 Aug 2026
https://github.com/gnudatalanguage/gdl
GDL - GNU Data Language
antlr astronomy data-analysis dicom eigen3 fits-files geophysics grib gsl-library hdf hdf5 mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization
Last synced: 22 Aug 2026
https://github.com/sebastian-zieba/PACMAN
PACMAN is a pipeline to reduce and analyze data collected by Hubble Wide Field Camera 3 (HST/WFC3) using either the G102 or G141 grism.
astronomy exoplanets hst python wfc3
Last synced: 22 Aug 2026
https://github.com/ropensci/daiquiri
Data quality reporting for temporal datasets.
data-quality initial-data-analysis r r-package reproducible-research rstats temporal-data time-series
Last synced: 22 Aug 2026
https://github.com/MeasureTransport/MParT
Monotone Parameterization Toolkit (MParT): A core library for constructing and using transport maps.
Last synced: 22 Aug 2026
https://github.com/statdivlab/rigr
Regression, Inference, and General Data Analysis Tools for R
regression statistics
Last synced: 22 Aug 2026
https://gite.lirmm.fr/doccy/RedOak
RedOak stand for Reference-free[d] Optimized approach byk-mers, RedOak is an alignment-free and reference-free software which allows to index a large collection of similar genomes. RedOak can also be applied to reads from unassembled genomes.
Last synced: 22 Aug 2026
https://github.com/fbreitwieser/krakenuniq
🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results
bioinformatics metagenomics
Last synced: 22 Aug 2026
https://github.com/vortex-exoplanet/VIP
VIP is a python package/library for angular, reference star and spectral differential imaging for exoplanet/disk detection through high-contrast imaging.
data-processing extrasolar-planets-disks high-contrast-imaging image-processing low-rank-approximation mcmc pca
Last synced: 22 Aug 2026
https://github.com/szhorvat/IGraphM
IGraph/M is the igraph interface for Mathematica
graph-algorithms graph-theory igraph mathematica mathematics network-analysis network-graph raspberry-pi wolfram-language
Last synced: 22 Aug 2026
https://github.com/ComputationalPhysiology/simcardems
Simula Cardiac ElectroMechanics Solver
Last synced: 22 Aug 2026
https://gitlab.com/programgreg/tagginglatencyestimator
Software to estimate the latency of the tagging process.
Last synced: 22 Aug 2026
https://github.com/Pizzuti92/MG-MAMPOSSt
MG-MAMPOSSt is a FORTRAN code that extended the MAMPOSSt algorithm of G. Mamon, A. Biviano and G. Boué, that performs Bayesian fits of models of mass and velocity anisotropy profiles to the distribution of tracers in projected phase space, to handle modified gravity models and constrain its parameters. The new version implements two distinct types of gravity modifications, namely general chameleon (including $f(\mathcal{R})$ models) and beyond Horndeski gravity (Vainshtein screening).
Last synced: 22 Aug 2026
https://github.com/tkonolige/city2ba
Tools for generating synthetic bundle adjustment datasets
bundle-adjustment
Last synced: 22 Aug 2026
https://github.com/MartianColonist/POSEIDON
Multidimensional atmospheric retrieval of exoplanet spectra.
Last synced: 22 Aug 2026
https://gitlab.com/ProjectRHEA/flowsolverrhea
RHEA: an open-source Reproducible Hybrid-architecture flow solver Engineered for Academia
Last synced: 22 Aug 2026
https://github.com/Jacks0nJ/PyFPT
Stochastic first-passage time (FPT) simulations using importance sampling.
cosmology cython first-passage-times importance-sampling inflation stochastic
Last synced: 22 Aug 2026
https://github.com/ianfhunter/GNOLL
GNOLL is an efficient dice notation parser for multiple programming languages that supports a wide set of dice notation
board-game c cpp dice dice-notation dice-roller dice-rolls go golang haskell java javascript js julia perl python r roleplaying-games rpg-dice-roller ttrpg
Last synced: 22 Aug 2026
https://github.com/N-Wouda/ALNS
Adaptive large neighbourhood search (and more!) in Python.
adaptive-large-neighbourhood-search alns cutting-stock-problem flow-shop metaheuristic operations-research python rcpsp scheduling-problem travelling-salesman-problem tsp vehicle-routing-problem vrp
Last synced: 22 Aug 2026
https://github.com/lorenzo-rovigatti/oxDNA
The standalone code to simulate the oxDNA/oxRNA models, now equipped with Python bindings and the oxDNA_analysis_tools suite
dna physics-simulation simulation
Last synced: 22 Aug 2026
https://github.com/sjbeckett/localcovid19now
processing and mapping COVID-19 case data at subnational scales
Last synced: 22 Aug 2026
https://github.com/ropensci/spiro/
Work with data from cardiopulmonary exercise testing
Last synced: 22 Aug 2026
https://github.com/BiomedSciAI/fuse-med-ml
A python framework accelerating ML based discovery in the medical field by encouraging code reuse. Batteries included :)
ai cmmd collaboration ct deep-learning fuse fuse-med-ml fusemedml hacktoberfest healthcare isic knight-challenge machine-learning medical medical-imaging multimodality python pytorch stoic vision
Last synced: 22 Aug 2026
