Ecosyste.ms: Summary

https://github.com/SNEWS2/snewpy

A Python package for working with supernova neutrinos

Last synced: 22 Aug 2026

https://github.com/llrs/experDesign

Design experiments distributed in several batches

batch cran experiment-design r r-package rstats

Last synced: 22 Aug 2026

https://github.com/michaeltouati/ESVM

Finite-volume Vlasov-Maxwell code for Plasma Physics simulations

electrostatic-wakefield finite-volume landau-damping maxwell plasmas two-stream-instability vlasov

Last synced: 22 Aug 2026

https://github.com/ropensci/jagstargets

Reproducible Bayesian data analysis pipelines with targets and JAGS

bayesian high-performance-computing jags make r r-targetopia reproducibility rjags rstats rstats-package statistics targets

Last synced: 22 Aug 2026

https://github.com/temken/obscura

A modular C++ tool and library for dark matter direct detection computations for both nuclear and electron recoil experiments.

dark-matter direct-detection-experiments

Last synced: 22 Aug 2026

https://github.com/KIT-MBS/pyrexMD

Workflow-orientated python package for Replica Exchange Molecular Dynamics

Last synced: 22 Aug 2026

https://github.com/koenderks/jaspAudit

The Audit module is developed to facilitate statistical auditing in both Bayesian and classical manifestations. The main feature is a workflow that helps guide auditors through the sampling process. Additionally, there are stand-alone analyses for planning, selecting, and evaluating a sample. The module is based on the R package jfa.

Last synced: 22 Aug 2026

https://github.com/chasmani/piecewise-regression

piecewise-regression (aka segmented regression) in python. For fitting straight line models to data with one or more breakpoints where the gradient changes.

data-analysis linear-regression model-fitting piecewise-regression python3 regression segmented-regression statistics

Last synced: 22 Aug 2026

https://github.com/CouncilDataProject/cookiecutter-cdp-deployment

Cookiecutter template for creating new CDP instances.

cdp-deployments civic-tech cookiecutter-template government-data local-government open-government

Last synced: 22 Aug 2026

https://github.com/carnotresearch/cr-sparse

Functional models and algorithms for sparse signal processing

basis-pursuit compressive-sensing convex-optimization functional-programming jax l1-regularization lasso linear-operators sparse-bayesian-learning sparse-linear-systems sparse-representations wavelets

Last synced: 22 Aug 2026

https://github.com/ahoshiyar/ordPens

Ordinal PCA, Selection and/or Smoothing of Ordinal Predictors

Last synced: 22 Aug 2026

https://github.com/r-spatialecology/shar

:package: Analyse species-habitat associations in R

habitat-association landscape-ecology point-pattern-analysis spatial-analysis

Last synced: 22 Aug 2026

https://github.com/samplics-org/samplics

Select, weight and analyze complex sample data

estimation officialstatistics sample samplics sampling survey variance weighting

Last synced: 22 Aug 2026

https://github.com/alicia-ziying-yang/conTEXT-explorer

ConTEXT Explorer is an open Web-based system for exploring and visualizing concepts (combinations of occurring words and phrases) over time in the text documents.

data-analysis data-science data-visualization information-retrieval nature-language-process webapp

Last synced: 22 Aug 2026

https://github.com/Music-and-Culture-Technology-Lab/omnizart

Omniscient Mozart, being able to transcribe everything in the music, including vocal, drum, chord, beat, instruments, and more.

beat-tracking chord drum-transcription music-information-retrieval music-transcription vocal

Last synced: 22 Aug 2026

https://github.com/raspishake/rsudp

Continuous visual display, sudden motion monitoring, and historical replay of Raspberry Shake data

Last synced: 22 Aug 2026

https://github.com/fabian-sp/GGLasso

A Python package for General Graphical Lasso computation

graphical-lasso graphical-models latent-variable-models network-inference optimization

Last synced: 22 Aug 2026

https://github.com/GRTLCollaboration/GRChombo

An AMR based open-source code for numerical relativity simulations.

Last synced: 22 Aug 2026

https://gitlab.com/remram44/taguette

Free and open source qualitative research tool

document hacktoberfest highlights notes qual qualitative research tagging tags text

Last synced: 22 Aug 2026

https://github.com/AndreWeiner/flowtorch

flowTorch - a Python library for analysis and reduced-order modeling of fluid flows

csv dmd jupyter openfoam pod pytorch spod tau

Last synced: 22 Aug 2026

https://github.com/onnela-lab/beiwe-backend

Beiwe is a smartphone-based digital phenotyping research platform. This is the Beiwe backend code

Last synced: 22 Aug 2026

https://github.com/wtraylor/modular_megafauna_model

Extendable, dynamic, process-based herbivore simulator that can be integrated into a dynamic vegetation model. Written as a C++ library.

dgvm ecosystem-model herbivores mammoth

Last synced: 22 Aug 2026

https://github.com/TNanukem/scikit-net/

A framework for machine learning in complex networks

Last synced: 22 Aug 2026

https://github.com/ArgoCanada/argodata

Download Argo Ocean Float Data

Last synced: 22 Aug 2026

https://github.com/QibangLiu/PDLSM-FEM_mpi

PDLSM-FEM solver is a parallel implementation of (adaptively) coupled peridynamics least squares minimization and finite element method (PDLSM-FEM) in 2D and 3D using MPI parallelism. This cross-platform solver is written in a C++ language and includes implicit static, explicit dynamic, and implicit dynamic solvers for structure analysis under displacement or traction loading.

Last synced: 22 Aug 2026

https://github.com/bootphon/phonemizer

Simple text to phones converter for multiple languages

Last synced: 22 Aug 2026

https://github.com/jameschapman19/cca_zoo

Canonical Correlation Analysis Zoo: A collection of Regularized, Deep Learning based, Kernel, and Probabilistic methods in a scikit-learn style framework

canonical-correlation-analysis cca cca-zoo dcca deep kernel multiset-cca multiview pls pytorch tensor-cca

Last synced: 22 Aug 2026

https://github.com/klevis-a/kinematics-vis

JavaScript application for visualizing and analyzing shoulder joint kinematics

Last synced: 22 Aug 2026

https://github.com/Hegghammer/daiR

R package for Google Document AI

google-cloud ocr r

Last synced: 22 Aug 2026

https://github.com/ORNL/tx2

Transformer eXplainability and eXploration

Last synced: 22 Aug 2026

https://github.com/hsci-r/finnish-media-scrapers

Scrapers for extracting articles from major Finnish journalistic media outlets

Last synced: 22 Aug 2026

https://github.com/hcdenbakker/sepia

taxonomic classifier based on the kraken2 algorithms and more

Last synced: 22 Aug 2026

https://github.com/mikegrudic/pytreegrav

Fast N-body gravitational force and potential in Python

Last synced: 22 Aug 2026

https://github.com/jorittmo/singcar

singcar: A package for statistically comparing single cases to normative controls

Last synced: 22 Aug 2026

https://github.com/BritishGeologicalSurvey/pyvolcans

Python tool to identify analogue volcanoes via VOLCANS (https://doi.org/10.1007/s00445-019-1336-3)

Last synced: 22 Aug 2026

https://github.com/embodied-computation-group/systole/

Systole: A python package for cardiac signal synchrony and analysis

biosignals bokeh electrocardiography heart-rate-variability hrv oximeter photoplethysmography physiological-signals ppg psychology-experiments psychophysiology

Last synced: 22 Aug 2026

https://github.com/nhejazi/medoutcon

:package: R/medoutcon: Efficient Causal Mediation Analysis with Natural and Interventional Direct/Indirect Effects

causal-inference causal-machine-learning inverse-probability-weights machine-learning mediation-analysis r r-package stochastic-interventions targeted-learning treatment-effects

Last synced: 22 Aug 2026

https://github.com/ElectionDataAnalysis/electiondata

Tools for consolidation and analysis of raw election results from the most reliable sources -- the election agencies themselves.

common-data-format election election-data

Last synced: 22 Aug 2026

https://github.com/JuliaOcean/AIBECS.jl

The ideal tool for exploring global marine biogeochemical cycles.

awesome biogeochemical biogeochemical-model biogeochemistry fluxes global inverse-model julia marine marine-tracer model modeling models ocean ocean-circulation oceanography optimization pathways tracer transport

Last synced: 22 Aug 2026

https://github.com/JLBLine/WODEN

CUDA code designed to simulate interferometric data using point, Gaussian, and shapelet sky models

Last synced: 22 Aug 2026

https://github.com/shirtsgroup/physical_validation

Physical validation of molecular simulations

molecular-dynamics molecular-mechanics molecular-simulation physical-validation python

Last synced: 22 Aug 2026

https://github.com/esteinig/nanoq

Minimal but speedy quality control for nanopore reads in Rust :bear:

Last synced: 22 Aug 2026

https://github.com/thejasvibr/bat_beamshapes

Directivity functions for various sound sources

acoustics beamshape bioacoustics directivity sound

Last synced: 22 Aug 2026

https://github.com/stammler/simframe

Python framework for setting up and running scientific simulations. It comes with a variety of integration schemes and some infrastructure of reading and writing data files.

differential-equations python science simulation

Last synced: 22 Aug 2026

https://github.com/Yu-Group/veridical-flow

Making it easier to build stable, trustworthy data-science pipelines based on the PCS framework.

ai data-science ensembling machine-learning ml pandas preprocessing python3 stability statistics tutorial workflow

Last synced: 22 Aug 2026

https://github.com/GaryBAYLOR/mixR

R package for fitting finite mixture models for both raw and binned data

Last synced: 22 Aug 2026

https://github.com/ropensci/terrainr

Get DEMs and orthoimagery from the USGS National Map, georeference your images and merge rasters, and visualize with Unity 3D

cran datasets dems map map-tiles mapping national-map nhd orthoimagery peer-reviewed progressr r r-package retrieve-data rstats terrainr unity unity-rendering-engine usgs

Last synced: 22 Aug 2026

https://github.com/neuralgraphs/diman

A Clojure library for applying dimensional analysis.

Last synced: 22 Aug 2026

https://github.com/nimble-dev/compareMCMCs/

Tools for comparing MCMC efficiency from nimble and/or other engines

Last synced: 22 Aug 2026

https://github.com/siara-cc/Unishox2

Compression for Unicode short strings (works on arduino)

arduino bandwidth-saver chat-message-compression cloud-cost-intelligence compression cost-optimization database-compression iot json-compression lora lorawan message-compression short-message-compression short-string sms-compression storage-saving string-compression string-compression-algorithms xml-compression

Last synced: 22 Aug 2026

https://gitlab.com/pyFBS/pyFBS

A Python package for Frequency Based Substructuring and Transfer Path Analysis

3D viewer FRF synthetisation MCK model System Equivalent Modal Mixing Virtual Point Transformation

Last synced: 22 Aug 2026

https://github.com/TeamCOMPAS/COMPAS

COMPAS rapid binary population synthesis code

Last synced: 22 Aug 2026

https://github.com/UCD4IDS/WaveletsExt.jl

A Julia extension package to Wavelets.jl

ac-wavelets filter julia signal-processing stationary-wavelets wavelet wavelet-transform

Last synced: 22 Aug 2026

https://github.com/multiply-org/sar-pre-processing

This is the MULTIPLY repository containing the functionality for SAR pre processing.

Last synced: 22 Aug 2026

https://github.com/cseptesting/pycsep

Tools to help earthquake forecast model developers build and evaluate their forecasts

Last synced: 22 Aug 2026

https://github.com/genome/bam-readcount

Count bases in BAM/CRAM files

Last synced: 22 Aug 2026

https://github.com/alan-turing-institute/Palaeoanalytics

Repository for the Paleoanalytics project.

hut23 hut23-530

Last synced: 22 Aug 2026

https://github.com/JGCRI/rfasst

Estimation of a consistent range of adverse health and agricultural effects attributable to air pollution for a GCAM scenario

Last synced: 22 Aug 2026

https://github.com/mbhall88/rasusa

Randomly subsample sequencing reads or alignments

alignment bam bioinformatics coverage downsample fasta fastq genome-analysis random rust subsampling

Last synced: 22 Aug 2026

https://github.com/delve-team/delve

PyTorch model training and layer saturation monitor

convolutional-neural-networks deep-learning layer-saturation model-training neural-dynamics pruning pytorch training-monitor visualization

Last synced: 22 Aug 2026

https://github.com/dynamicslab/pysindy

A package for the sparse identification of nonlinear dynamical systems from data

dynamical-systems machine-learning model-discovery nonlinear-dynamics sparse-regression system-identification

Last synced: 22 Aug 2026

https://github.com/TeamLEGWORK/LEGWORK

Package for making predictions about stellar-origin sources in space-based gravitational wave detectors

astrophysics gravitational-waves lisa python

Last synced: 22 Aug 2026

https://github.com/vishwas1984/LaplaceInterpolation.jl

Last synced: 22 Aug 2026

https://github.com/aqtech-ca/mctreesearch4j

Last synced: 22 Aug 2026

https://github.com/bramvandijk88/cacatoo

A javascript library for building, exploring, and sharing spatially structured models of biological systems

Last synced: 22 Aug 2026

https://github.com/rhenkin/visxhclust

A Shiny app and functions for visual exploration of hierarchical clustering.

clustering data-analysis data-science r r-package r-shiny rstats shiny-apps

Last synced: 22 Aug 2026

https://github.com/ImperialCollegeLondon/champ

hacktoberfest

Last synced: 22 Aug 2026

https://github.com/UNSW-CEEM/nempy

A Python package for modelling the Australian National Electricity Market dispatch procedure

Last synced: 22 Aug 2026

https://github.com/JuliaManifolds/Manopt.jl

🏔️Optimization on Riemannian Manifolds in Julia

julia manifolds manopt optimization

Last synced: 22 Aug 2026

https://github.com/Lightning-AI/torchmetrics

Machine learning metrics for distributed, scalable PyTorch applications.

analyses data-science deep-learning machine-learning metrics python pytorch

Last synced: 22 Aug 2026

https://github.com/SamDuffield/bmm

Map-matching using particle smoothing methods.

Last synced: 22 Aug 2026

https://github.com/ocean-eddy-cpt/gcm-filters

Diffusion-based Spatial Filtering of Gridded Data

Last synced: 22 Aug 2026

https://github.com/JuliaSmoothOptimizers/DCISolver.jl

Last synced: 22 Aug 2026

https://github.com/kostergroup/SIMsalabim

A 1D drift-diffusion simulator for semiconductor devices (LEDs, solar cells, diodes, organics, perovskites)

Last synced: 22 Aug 2026

https://gitlab.kitware.com/LBM/lattice-boltzmann-solver

Last synced: 22 Aug 2026

https://github.com/metawards/MetaWards

MetaWards disease metapopulation analysis and modelling software. Professional geographical SIR model with a flexible plugin architecture to support complex scenario modelling

coronavirus covid covid-19 epidemic-model epidemic-simulations epidemics epidemiology epidemiology-analysis sir-model

Last synced: 22 Aug 2026

https://github.com/mne-tools/mne-python

MNE: Magnetoencephalography (MEG) and Electroencephalography (EEG) in Python

ecog eeg electrocorticography electroencephalography machine-learning magnetoencephalography meg neuroimaging neuroscience python statistics visualization

Last synced: 22 Aug 2026

https://github.com/elwinter/nnde

nnde is a package of Python modules which implement a set of neural networks which solve ordinary and partial differential equations. This code is based on the previous package, nnode.

Last synced: 22 Aug 2026

https://github.com/JuliaQX/QXTools.jl

Julia package for quantum circuit simulation using tensor networks

Last synced: 22 Aug 2026

https://github.com/devsim/devsim

TCAD Semiconductor Device Simulator

c-plus-plus devsim finite-volume pde python semiconductor semiconductor-physics tcad tcad-device-simulator

Last synced: 22 Aug 2026

https://gitlab.com/picos-api/picos

A Python interface to conic optimization solvers.

math optimization python

Last synced: 22 Aug 2026

https://github.com/volkamerlab/opencadd

A Python library for structural cheminformatics

Last synced: 22 Aug 2026

https://github.com/alexander-pastukhov/bistablehistory

A package to compute a cumulative history for time-series of perceptual dominance in bistable displays.

Last synced: 22 Aug 2026

https://github.com/pybamm-team/liionpack

A battery pack simulation tool that uses the PyBaMM framework

Last synced: 22 Aug 2026

https://github.com/villano-lab/nrCascadeSim

calculating the NR spectrum resulting from neutron-capture cascades.

Last synced: 22 Aug 2026

https://github.com/dankelley/oce

R package for oceanographic processing

oceanography r

Last synced: 22 Aug 2026

https://github.com/inpefess/gym-saturation

a collection of Gymnasium environments for saturation provers

Last synced: 22 Aug 2026

https://github.com/symmy596/SurfinPy

Thermodynamic Phase Diagram Generator

density-functional-theory thermodynamic-properties

Last synced: 22 Aug 2026

https://github.com/Magritte-code/Magritte

A modern software library for simulating radiation transport.

astrophysics physics-simulation radiative-transfer

Last synced: 22 Aug 2026

https://github.com/ni1o1/transbigdata

A Python package develop for transportation spatio-temporal big data processing, analysis and visualization.

bike-sharing-data bus-gps-data data-analysis data-pre-processing data-quality-analysis data-visualization geospatial-data python spatio-temporal-data taxi-gps-data transportation