https://github.com/alesantuz/musclesyneRgies

R package to extract muscle synergies from electromyogram

emg muscle-synergies nmf physiol r rstudio

Last synced: 20 Aug 2026

https://github.com/jakevdp/mst_clustering

Scikit-learn style estimator for Minimum Spanning Tree Clustering in Python

Last synced: 20 Aug 2026

https://github.com/USCbiostats/partition

A fast and flexible framework for data reduction in R

data-reduction dimensionality-reduction partitional-clustering r

Last synced: 20 Aug 2026

https://github.com/matthiasdemuzere/w2w

A python tool that ingests WUDAPT information into WRF.

Last synced: 20 Aug 2026

https://github.com/ortk95/planetmapper

PlanetMapper: An open source Python package for visualising, navigating and mapping Solar System observations

astronomy ephemeris geometry physics planet-mapper planetary-science planetmapper python science solar-system space spice

Last synced: 20 Aug 2026

https://github.com/s-goldman/Dusty-Evolved-Star-Kit

SED-fitting python package for fitting evolved stars

Last synced: 20 Aug 2026

https://github.com/jfjlaros/bin-parser

General binary file parser.

binary json parser yaml

Last synced: 20 Aug 2026

https://github.com/miniufo/xinvert

Invert geophysical fluid dynamic problems (elliptic partial differential equations) using SOR iteration method.

atmospheric-science eliassen-model geophysical-fluid-dynamics gill-matsuno-model inversion-problem meteorology munk-stommel oceanography omega-equation poisson-equation pv-inversion streamfunction successive-over-relaxation velocity-potential wind-driven-circulation

Last synced: 20 Aug 2026

https://github.com/JuliaGraphs/MultilayerGraphs.jl

A Julia package for the creation, manipulation and analysis of the structure, dynamics and functions of multilayer graphs.

complex-networks complex-systems discrete-mathematics graph graph-algorithms graph-theory graph-theory-algorithms graph-theory-analysis graphs julia julia-language julia-package multilayer-graphs multilayer-network multilayer-networks multiplex-networks network network-analysis network-science networks

Last synced: 20 Aug 2026

https://github.com/seanpue/graphtransliterator

A graph-based transliteration tool

Last synced: 20 Aug 2026

https://github.com/kdesimone/popeye

A population receptive field estimation tool

Last synced: 20 Aug 2026

https://gitlab.com/cerfacs/batman

Statistical analysis for expensive computer codes made easy.

CFD Gaussian process LES ensemble pod polynomial chaos python surrogate model uncertainty quantification uncertainty visualization

Last synced: 20 Aug 2026

https://github.com/PhilBoileau/cvCovEst

An R package for nonparametric covariance matrix estimation in high dimensions

covariance-matrix-estimation cross-validation high-dimensional-statistics nonparametric-statistics

Last synced: 20 Aug 2026

https://github.com/BouchardLab/pyuoi

The Union of Intersections Framework in Python

Last synced: 20 Aug 2026

https://github.com/prdm0/ropenblas

Package to link R language to OpenBLAS library

Last synced: 20 Aug 2026

https://github.com/USNavalResearchLaboratory/eispac

Read the Docs

Last synced: 20 Aug 2026

https://github.com/SandoghdarLab/PiSCAT

PiSCAT is a python-based package with a graphical user interface for performing high-performance analysis on a variety of iSCAT measurements.

data-analysis microscopy-images nano-particles python

Last synced: 20 Aug 2026

https://github.com/fat-forensics/fat-forensics

Modular Python Toolbox for Fairness, Accountability and Transparency Forensics

accountability explainability explainable-ai fairness interpretability interpretable-ai machine-learning transparency

Last synced: 20 Aug 2026

https://github.com/rajeshrinet/pystokes

PyStokes: phoresis and Stokesian hydrodynamics in Python. github.com/rajeshrinet/pystokes

active-colloids active-particles autophoretic-suspensions colloids crystallization cython force-fields hydrodynamic-interactions phase-separation phoretic-interactions pystokes python stokes-flow stokesian-hydrodynamics traction

Last synced: 20 Aug 2026

https://github.com/pyccel/pyccel/

Python extension language using accelerators

dsl fortran hpc mpi openacc openmp python python3 sympy transpiler

Last synced: 20 Aug 2026

https://github.com/gnudatalanguage/gdl

GDL - GNU Data Language

antlr astronomy data-analysis dicom eigen3 fits-files geophysics grib gsl-library hdf hdf5 mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization

Last synced: 20 Aug 2026

https://github.com/ecrl/ecnet

QSPR-based PyTorch models for fuel property prediction, with bundled datasets and analytical blend rules

cetane-number computational-chemistry fuel-property-prediction machine-learning neural-network pytorch qspr

Last synced: 20 Aug 2026

https://gitlab.com/free-astro/siril

The Siril image processing software for amateur astronomy

astronomy image processing software linux osx preprocessing windows

Last synced: 20 Aug 2026

https://github.com/RTIInternational/gobbli

Deep learning with text doesn't have to be scary.

deep-learning docker nlp python

Last synced: 20 Aug 2026

https://github.com/qpv-research-group/rayflare

Open-source, integrated optical modelling of complex stacks

multiscale-simulation optics physics ray-tracing raytracing rigorous-coupled-wave solar-cells transfer-matrix-method

Last synced: 20 Aug 2026

https://github.com/LCAV/LenslessPiCam

Lensless imaging toolkit. Complete tutorial: https://go.epfl.ch/lenslesspicam

admm bayer fista inverse-problems lensless python raspberry-pi signal-processing unrolled-algorithms

Last synced: 20 Aug 2026

https://github.com/amrex-astro/Castro

Castro (Compressible Astrophysics): An adaptive mesh, astrophysical compressible (radiation-, magneto-) hydrodynamics simulation code for massively parallel CPU and GPU architectures.

adaptive-mesh-refinement amr amrex astrophysical-simulation astrophysics castro cfd gravity hydrodynamics pde radiation reactions

Last synced: 20 Aug 2026

https://github.com/lisc-tools/lisc

Literature Scanner: Automated collection & analyses of the scientific literature.

literature-mining literature-review meta-analysis scientific-publications text-mining web-scraping

Last synced: 20 Aug 2026

https://github.com/ropensci/rcites

:package: R package to access the CITES Speciesplus database

api-client cites database endangered-species r r-package rstats trade

Last synced: 20 Aug 2026

https://github.com/nextstrain/augur/

Pipeline components for real-time phylodynamic analysis

Last synced: 20 Aug 2026

https://github.com/atmoschem/EmissV

Create and processing emissions for numeric air quality models

atmos atmospheric-chemistry atmospheric-modelling atmospheric-models atmospheric-science emissions wrf-chem

Last synced: 20 Aug 2026

https://github.com/quantling/pyndl

pyndl implements a Naive discriminative learning which is a learning and classification models based on the Rescorla-Wagner equations in python3.

Last synced: 20 Aug 2026

https://github.com/deepskies/deeplenstronomy

A pipeline for versatile strong lens sample simulations

gravitational-lensing simulation strong-lensing

Last synced: 20 Aug 2026

https://github.com/SNEWS2/sntools

Event generator for supernova burst neutrinos

Last synced: 20 Aug 2026

https://github.com/mtsch/Ripserer.jl

Flexible and efficient persistent homology computation.

cohomology homology julia persistent-homology ripser tda topological-data-analysis topology

Last synced: 20 Aug 2026

https://github.com/UTEL-UIUC/gtfs_segments

GTFS Segments: A fast and efficient library to generate bus stop spacings

bus distribution gtfs-feed python stop transit transit-data

Last synced: 20 Aug 2026

https://github.com/ORNL/curifactory

An experiment workflow and organization tool.

Last synced: 20 Aug 2026

https://github.com/ropensci/medrxivr

Access and search medRxiv and bioRxiv preprint data

bibliographic-database biorxiv evidence-synthesis medrxiv-data peer-reviewed preprint-records r r-package rstats systematic-reviews

Last synced: 20 Aug 2026

https://github.com/BrianAronson/birankr

CRAN package for estimating various rank (centrality) measures of nodes in bipartite graphs (two-mode networks).

Last synced: 20 Aug 2026

https://github.com/cproctor/qualitative-coding

Qualitative coding for computer scientists

Last synced: 20 Aug 2026

https://github.com/symmy596/SurfinPy

Thermodynamic Phase Diagram Generator

density-functional-theory thermodynamic-properties

Last synced: 20 Aug 2026

https://github.com/bauer-alex/APCtools

Descriptive and model-based tools for Age-Period-Cohort analyses

Last synced: 20 Aug 2026

https://github.com/snek5000/snek5000

:snake: Python framework for Nek5000 :rocket:

cfd closember fluiddyn fluidsim jinja2 nek5000 python simulation snakemake snek5000 workflow

Last synced: 20 Aug 2026

https://github.com/kpeeters/cadabra2

A field-theory motivated approach to computer algebra.

cadabra2 computer-algebra computer-algebra-system cplusplus mathematics physics python3 science-research symbolic-manipulation sympy tensor-algebra tensors

Last synced: 20 Aug 2026

https://github.com/Yu-Group/veridical-flow

Making it easier to build stable, trustworthy data-science pipelines based on the PCS framework.

ai data-science ensembling machine-learning ml pandas preprocessing python3 stability statistics tutorial workflow

Last synced: 20 Aug 2026

https://github.com/pygsflow/pygsflow

Python package to Create, Read, Write, Edit, and Visualize GSFLOW models

groundwater groundwater-modelling gsflow integrated-modelling modflow prms pygsflow python surface-water usgs

Last synced: 20 Aug 2026

https://github.com/AlexanderLabWHOI/EUKulele

Automatic eukaryotic taxonomic classification

Last synced: 20 Aug 2026

https://github.com/berenslab/fundus_image_toolbox

A Python package for fundus image processing.

Last synced: 20 Aug 2026

https://github.com/JonasMoss/univariateML

An R package for maximum likelihood estimation of univariate densities.

density estimation maximum-likelihood

Last synced: 20 Aug 2026

https://github.com/EnergyModelsX/EnergyModelsBase.jl

Core package for the EnergyModelsX framework including a multi horizon operational energy system model without geographical features.

Last synced: 20 Aug 2026

https://github.com/giotto-ai/giotto-deep

Deep learning made topological.

computational-geometry deep-learning image-processing nlp pytorch tda

Last synced: 20 Aug 2026

https://github.com/Sulstice/cocktail-shaker

A peptide string building for expanding chemical dataset combinations.

Last synced: 20 Aug 2026

https://github.com/UM-PEPL/HallThruster.jl

An open-source fluid Hall thruster code

Last synced: 20 Aug 2026

https://github.com/yaml2sbml-dev/yaml2sbml

Tool to convert an ODE model specified in the YAML format to SBML.

ode ode-model petab sbml yaml

Last synced: 20 Aug 2026

https://github.com/jrbourbeau/pyunfold

Iterative unfolding for Python

data-analysis deconvolution inverse-problems python regularization statistics unfolding

Last synced: 20 Aug 2026

https://github.com/LDEO-CREW/Pythonic-DISORT

Discrete Ordinates Solver for the (1D) Radiative Transfer Equation in a single or multi-layer plane-parallel atmosphere. Coded entirely in Python 3. Based on Stamnes' FORTRAN DISORT (see references in the Jupyter Notebook) and has its main features.

atmospheric-modelling discrete-ordinates-method disort python radiative-transfer radiative-transfer-models

Last synced: 20 Aug 2026

https://github.com/openmsi/openmsistream

Materials data streaming applications, written in Python using Apache Kafka, with a focus on deployment in laboratory environments

Last synced: 20 Aug 2026

https://github.com/rheia-framework/RHEIA

Robust design optimization of renewable Hydrogen and dErIved energy cArrier systems https://rheia.readthedocs.io/en/latest/

Last synced: 20 Aug 2026

https://github.com/octopus-sensing/octopus-sensing

eeg experience-scenarios gsr ppg questionnaire shimmer

Last synced: 20 Aug 2026

https://github.com/Hazboun6/hasasia

Python package for calculating pulsar timing array sensitivity curves.

Last synced: 20 Aug 2026

https://github.com/singularityhub/singularity-compose

orchestration for singularity containers (under development)

container-orchestration singularity singularity-compose

Last synced: 20 Aug 2026

https://github.com/Cascella-Group-UiO/HyMD

Massively parallel hybrid particle-field molecular dynamics in Python.

chemistry coarse-grained hybrid-particle-field molecular-dynamics physics

Last synced: 20 Aug 2026

https://github.com/nipy/heudiconv/

Flexible DICOM conversion into structured directory layouts

Last synced: 20 Aug 2026

https://github.com/samuelmurail/af_analysis

Analysis of alphafold and colabfold results

Last synced: 20 Aug 2026

https://github.com/bayesflow-org/bayesflow

A Python library for efficient Bayesian modeling with deep learning

amortized-inference bayesian-statistics computational-modeling deep-learning generative-ai generative-models neural-networks simulation-based-inference

Last synced: 20 Aug 2026

https://github.com/MeasureTransport/MParT

Monotone Parameterization Toolkit (MParT): A core library for constructing and using transport maps.

Last synced: 20 Aug 2026

https://github.com/nicolet5/DiffCapAnalyzer

A tool for quantitative analysis of differential capacity data!

Last synced: 20 Aug 2026

https://github.com/pyamg/pyamg/

Algebraic Multigrid Solvers in Python

amg conda krylov multigrid pyamg python solver sparse-matrix

Last synced: 20 Aug 2026

https://github.com/project-asgard/asgard

Last synced: 20 Aug 2026

https://gitlab.com/gims-developers/gims

GIMS -- Graphical Interface for Materials Simulations -- is an open-source, browser-based toolbox for electronic structure codes. Try it here: [gims.ms1p.org](https://gims.ms1p.org)

Last synced: 20 Aug 2026

https://github.com/trchudley/pdemtools

Conveniently search, download, and process ArcticDEM and REMA products

arcticdem coregistration dem digital-elevation-model geospatial glaciers glaciology polar-geospatial-center python rema terrain-analysis

Last synced: 20 Aug 2026

https://github.com/anugrahjo/PySLSQP

A transparent Python interface to the SLSQP optimization algorithm, with advanced features and visualization capabilities.

nonlinear-optimization optimization optimization-algorithms slsqp

Last synced: 20 Aug 2026

https://github.com/henry2004y/Vlasiator.jl

Data processor for Vlasiator

Last synced: 20 Aug 2026

https://github.com/jbytecode/LinRegOutliers

Direct and robust methods for outlier detection in linear regression

linear-regression outliers-detection robust-statistics

Last synced: 20 Aug 2026

https://github.com/mpascariu/ungroup

Estimating Smooth Distributions from Coarsely Binned Data - R Package

distributions glm smoothing ungrouping

Last synced: 20 Aug 2026

https://github.com/valentineap/pyprop8

A lightweight Python code to calculate the seismic response of a layered half-space (including static components), and derivatives of the wavefield wrt source components.

Last synced: 20 Aug 2026

https://github.com/ptaconet/modisfast

Fast and efficient access to MODIS, VIIRS and GPM Earth Observation data with R

data-cube earth-science-data environmental-data gpm land modis nasa opendap precipitation-data r temperature-data vegetation-data viirs

Last synced: 20 Aug 2026

https://github.com/FrederikLizakJohansen/DebyeCalculator

A vectorised implementation of the Debye Scattering Equation on CPU and GPU

Last synced: 20 Aug 2026

https://github.com/NSAPH-Software/CRE

The Causal Rule Ensemble Method

Last synced: 20 Aug 2026

https://gitlab.com/eidheim/Simple-Web-Server

A very simple, fast, multithreaded, platform independent HTTP and HTTPS server and client library implemented using C++11 and Boost.Asio. Created to be an easy way to make REST resources available from C++ applications.

Last synced: 20 Aug 2026

https://github.com/ashleychontos/pySYD

automated measurements of global asteroseismic parameters

asteroseismology fundamental-stellar-properties k2 kepler python stars tess

Last synced: 20 Aug 2026

https://github.com/jbloomlab/alignparse

Align sequences and then parse features.

Last synced: 20 Aug 2026

https://github.com/array-split/array_split

Python package for decomposing multi-dimensional arrays into sub-arrays (slices) according to multiple criteria.

Last synced: 20 Aug 2026

https://github.com/brmather/pycurious

Python package for computing the Curie depth from the magnetic anomaly

bayesian-inference curie-depth magnetic-anomaly magnetism python

Last synced: 20 Aug 2026

https://github.com/PsrSigSim/PsrSigSim

The first version of our pulsar signal simulator.

Last synced: 20 Aug 2026

https://github.com/enzo-project/enzo-dev

The Enzo adaptive mesh-refinement simulation code.

Last synced: 20 Aug 2026

https://github.com/AtrCheema/SeqMetrics

Various errors for tabular/structured/time-series data

errors loss performance-metrics score

Last synced: 20 Aug 2026

https://github.com/RemoteSensingTools/vSmartMOM.jl

A full end-to-end modular software suite for radiative transfer and related atmospheric analysis

gpu-acceleration radiative-transfer remote-sensing scattering-physics

Last synced: 20 Aug 2026

https://github.com/icecube/FIRESONG

FIRst Extragalactic Simulation Of Neutrino and Gamma-ray

Last synced: 20 Aug 2026

https://github.com/JanCBrammer/biopeaks

A graphical user interface for feature extraction from heart- and breathing biosignals.

biosignals bitalino breathing breathing-rate ecg edf electrophysiology gui heart heart-rate opensignals peak-detection ppg python signal-analysis

Last synced: 20 Aug 2026

https://github.com/SebastianoF/bruker2nifti

Medical image format converter: from raw Bruker ParaVision to nifti.

Last synced: 20 Aug 2026

https://github.com/uw-comphys/shapelets

shapelets is a python package that implements several shapelet functions and some of their significant applications in science and astronomy.

Last synced: 20 Aug 2026

https://github.com/fruzsinaagocs/oscode

Code for efficient solution of oscillatory ordinary differential equations

differential-equations numerical-methods numpy oscillator runge-kutta wentzel-kramers-brillouin

Last synced: 20 Aug 2026

https://github.com/sparks-baird/xtal2png

Encode/decode a crystal structure to/from a grayscale PNG image for direct use with image-based machine learning models such as Palette.

crystallography image-processing machine-learning materials-informatics materials-science python

Last synced: 20 Aug 2026

https://github.com/Chaste/Chaste

Chaste - Cancer Heart And Soft Tissue Environment - main public repository.

c-plus-plus cancer-research cell-based computational-biology developmental-biology electrophysiology hpc-applications mathematical-biology mathematical-modelling physiology

Last synced: 20 Aug 2026

https://github.com/tscnlab/LightLogR

R package for processing and analysing light logger and optical radiation dosimeter data

dosimetry light rstats-package time-series-analysis wearable-devices wearable-sensors

Last synced: 20 Aug 2026

https://github.com/sebastien-plutniak/archeofrag

R package for Refitting and Spatial Analysis in Archaeology

archaeological-objects archaeological-science archaeology fragmentation network-analysis

Last synced: 20 Aug 2026

https://github.com/simonom/PyCHAM

PyCHAM: CHemistry with Aerosol Microphysics in Python box model for Windows, Linux and Mac

aerosol-chambers aerosol-microphysics atmospheric-modelling chemical-scheme indoor-air-quality scipy

Last synced: 20 Aug 2026

https://github.com/scikit-tda/kepler-mapper

Kepler Mapper: A flexible Python implementation of the Mapper algorithm.

data-visualization hacktoberfest kepler-mapper mapper-algorithm python tda topological-data-analysis visualization

Last synced: 20 Aug 2026

https://gitlab.com/davidwoodburn/r3f

A library for three-dimensional, reference-frame conversions

ECEF Geodetic Inertial measurement unit navigation reference frames rotation

Last synced: 19 Aug 2026