JOSS: https://github.com/nextstrain/augur/
Score: 10.372803445345365
Last synced: about 13 hours ago
JSON representation
Repository metadata:
Pipeline components for real-time phylodynamic analysis
- Host: GitHub
- URL: https://github.com/nextstrain/augur/
- Owner: nextstrain
- License: agpl-3.0
- Created: 2016-04-22T20:28:36.000Z (over 10 years ago)
- Default Branch: master
- Last Pushed: 2026-08-13T17:00:04.000Z (7 days ago)
- Last Synced: 2026-08-14T06:25:30.554Z (7 days ago)
- Language: Python
- Homepage: https://docs.nextstrain.org/projects/augur/
- Size: 19.3 MB
- Stars: 277
- Watchers: 25
- Forks: 134
- Open Issues: 265
-
Metadata Files:
- Readme: README.md
- Changelog: CHANGES.md
- License: LICENSE.nextstrain-cli
- Citation: CITATION.cff
Owner metadata:
- Name: Nextstrain
- Login: nextstrain
- Email:
- Kind: organization
- Description: Real-time tracking of pathogen evolution
- Website: https://nextstrain.org
- Location:
- Twitter: nextstrain
- Company:
- Icon url: https://avatars.githubusercontent.com/u/22159334?v=4
- Repositories: 84
- Last Synced at: 2024-04-11T18:11:56.173Z
- Profile URL: https://github.com/nextstrain
GitHub Events
Total
- Create event: 181
- Delete event: 181
- Fork event: 6
- Issue comment event: 562
- Issues event: 199
- Pull request event: 305
- Pull request review comment event: 394
- Pull request review event: 434
- Push event: 642
- Release event: 15
- Watch event: 9
- Total: 2928
Last Year
- Create event: 41
- Delete event: 50
- Issue comment event: 60
- Issues event: 32
- Pull request event: 56
- Pull request review comment event: 71
- Pull request review event: 66
- Push event: 145
- Release event: 2
- Watch event: 3
- Total: 526
Committers metadata
Last synced: 1 day ago
Total Commits: 4,581
Total Committers: 59
Avg Commits per committer: 77.644
Development Distribution Score (DDS): 0.785
Commits in past year: 255
Committers in past year: 10
Avg Commits per committer in past year: 25.5
Development Distribution Score (DDS) in past year: 0.392
| Name | Commits | |
|---|---|---|
| Victor Lin | 1****n | 984 |
| John Huddleston | h****j@g****m | 745 |
| James Hadfield | j****2@s****k | 509 |
| Trevor Bedford | t****r@b****o | 473 |
| Richard Neher | r****r@u****h | 344 |
| Jover Lee | j****1@g****m | 298 |
| Thomas Sibley | t****y@f****g | 228 |
| Richard Neher | r****r@t****e | 191 |
| Emma Hodcroft | e****t@g****m | 157 |
| Sidney Bell | s****b@u****u | 119 |
| Eric Danielson | e****n@t****m | 87 |
| Nextstrain bot | h****o@n****g | 81 |
| Cornelius Roemer | c****r@g****m | 61 |
| Barney Potter | b****4@g****m | 34 |
| John SJ Anderson | j****4@f****g | 32 |
| Dependabot | 4****] | 29 |
| Benjamin Otter | b****r@s****h | 22 |
| Eddie Lebow | e****w | 20 |
| Elias Harkins | e****s@g****m | 15 |
| Ryan Grout | r****n@r****g | 14 |
| Richard Neher | n****r@l****h | 12 |
| Kairsten Fay | k****y@g****m | 12 |
| Jennifer Chang | j****m@g****m | 11 |
| Anna Parker | a****r@g****m | 10 |
| Louise Moncla | l****a@g****m | 8 |
| Venkata Sai Kiran Kollapudi | s****n@s****m | 8 |
| Mingye Wang | a****6@g****m | 6 |
| Christopher Tomkins-Tinch | t****c@b****g | 6 |
| Carol Willing | c****e@w****m | 5 |
| Alli Black | b****i@g****m | 4 |
| and 29 more... | ||
Issue and Pull Request metadata
Last synced: 1 day ago
Total issues: 412
Total pull requests: 843
Average time to close issues: 11 months
Average time to close pull requests: 3 months
Total issue authors: 48
Total pull request authors: 32
Average comments per issue: 2.0
Average comments per pull request: 1.78
Merged pull request: 624
Bot issues: 0
Bot pull requests: 30
Past year issues: 30
Past year pull requests: 94
Past year average time to close issues: about 1 month
Past year average time to close pull requests: 12 days
Past year issue authors: 7
Past year pull request authors: 9
Past year average comments per issue: 1.93
Past year average comments per pull request: 1.1
Past year merged pull request: 67
Past year bot issues: 0
Past year bot pull requests: 10
Top Issue Authors
- victorlin (109)
- corneliusroemer (81)
- joverlee521 (73)
- jameshadfield (44)
- huddlej (23)
- genehack (15)
- tsibley (10)
- trvrb (4)
- sidneymbell (3)
- Eric-CH-Chen (3)
- biocyberman (2)
- vanessazubach (2)
- LauraU123 (2)
- swantan (2)
- willingc (2)
Top Pull Request Authors
- victorlin (407)
- joverlee521 (94)
- corneliusroemer (68)
- jameshadfield (64)
- tsibley (39)
- huddlej (32)
- dependabot[bot] (30)
- genehack (28)
- rneher (21)
- elebow (6)
- j23414 (6)
- vanguard737 (5)
- trvrb (5)
- kimandrews (3)
- emmahodcroft (3)
Top Issue Labels
- bug (151)
- enhancement (124)
- documentation (44)
- proposal (8)
- priority: high (8)
- easy problem (6)
- needs triage (4)
- priority: low (4)
- duplicate (4)
- moderate problem (4)
- please take this issue (3)
- low priority (3)
- blocked (3)
- request for comments (2)
- office-hours (2)
- VCF (2)
- faq (2)
- moderate priority (2)
- question (1)
- Epic (1)
- breaking (1)
- high priority (1)
- upstream (1)
- v6 (1)
- priority: moderate (1)
- discussion-forum (1)
- needs information (1)
- schema (1)
- good first issue (1)
Top Pull Request Labels
- dependencies (30)
- breaking (25)
- documentation (11)
- github_actions (9)
- python (9)
- enhancement (5)
- bug (4)
- easy problem (2)
- needs triage (2)
- moderate priority (2)
- v6 (1)
- high priority (1)
- VCF (1)
- revisit sometime (1)
Dependencies
- actions/checkout v2 composite
- actions/checkout v3 composite
- actions/download-artifact v3 composite
- actions/setup-python v3 composite
- actions/upload-artifact v3 composite
- codecov/codecov-action v2 composite
- conda-incubator/setup-miniconda v2 composite
- actions/checkout v2 composite
- actions/setup-python v2 composite
- actions/upload-artifact v3 composite
- actions/checkout v3 composite
- actions/setup-python v4 composite
- bcbio-gff *
- biopython *
- cvxopt *
- isodate *
- jsonschema *
- networkx *
- numpy *
- packaging *
- pandas *
- phylo-treetime *
- pyfastx *
- scipy *
- xopen *