https://github.com/JGCRI/helios
Heating and Cooling Degree processing for GCAM from various sources such as WRF and CMIP
Last synced: 20 Jun 2026
https://github.com/Pecnut/stokesian-dynamics
Implementation of Stokesian Dynamics in Python
Last synced: 20 Jun 2026
https://github.com/chenyangkang/stemflow
A Python Package for Adaptive Spatio-Temporal Exploratory Model (AdaSTEM)
adaptive-spatio-temporal-exploratory-model animal animal-movement big-data biodiversity biogeography bird-migration bird-survey ebird ecology ecology-modelling geospatial machine-learning movement movement-ecology ornithology spatio-temporal-analysis spatiotemporal spatiotemporal-dynamics species-distribution-modeling
Last synced: 20 Jun 2026
https://github.com/R-Computing-Lab/BGmisc/
Functions for extended pedigree analysis
behavior-genetics cran package r r-package
Last synced: 20 Jun 2026
https://github.com/dynamicslab/pykoopman
A package for computing data-driven approximations to the Koopman operator.
Last synced: 20 Jun 2026
https://github.com/DeepRank/deeprank2
An open-source deep learning framework for data mining of protein-protein interfaces or single-residue variants.
convolutional-neural-networks deep-learning graph-neural-networks protein-protein-interfaces pytorch single-residue-variants structural-biology
Last synced: 20 Jun 2026
https://github.com/beardymcjohnface/Koverage
Quickly get coverage statistics given reads and an assembly
Last synced: 20 Jun 2026
https://github.com/JaGeo/LobsterPy
Package to perform automatic bonding analysis with the program Lobster in the field of computational materials science and quantum chemistry
chemical-bonding computational-chemistry computational-materials-science materials-informatics plotting python
Last synced: 20 Jun 2026
https://github.com/cbyrohl/scida
scida is an out-of-the-box analysis tool for large scientific datasets. It primarily supports the astrophysics community, focusing on cosmological and galaxy formation simulations using particles or unstructured meshes, as well as large observational datasets. This tool uses dask, allowing analysis to scale.
Last synced: 20 Jun 2026
https://github.com/dirmeier/surjectors
Surjection layers for density estimation with normalizing flows
bijections density-estimation normalizing-flows python surjections
Last synced: 20 Jun 2026
https://github.com/lrnv/Copulas.jl
A fully `Distributions.jl`-compliant copula package
copula julia
Last synced: 20 Jun 2026
https://github.com/acerbilab/pybads
PyBADS: Bayesian Adaptive Direct Search optimization algorithm for model fitting in Python
bayesian-optimization log-likelihood noiseless-functions noisy-functions optimization-algorithms python
Last synced: 20 Jun 2026
https://github.com/nansencenter/DAPPER
Data Assimilation with Python: a Package for Experimental Research
bayesian-filter bayesian-methods chaos data-assimilation enkf kalman kalman-filtering particle-filter state-estimation
Last synced: 20 Jun 2026
https://github.com/tum-pbs/PhiML
Intuitive scientific computing with dimension types for Jax, PyTorch, TensorFlow & NumPy
Last synced: 20 Jun 2026
https://github.com/mindearth/mobilkit
A Python Toolkit for Urban Resilience and Disaster Risk Management Analytics using High Frequency Human Mobility Data
Last synced: 20 Jun 2026
https://github.com/Oden-EAG/hp3d
MPI/OpenMP hp-adaptive 3D finite element software
computational-science fem finite-elements high-order hp-adaptivity hpc multiphysics scientific-computing
Last synced: 20 Jun 2026
https://github.com/worlddynamics/WorldDynamics.jl
An open-source framework written in Julia for global integrated assessment models.
hacktoberfest integrated-assessment-model julia sciml simulation world3
Last synced: 20 Jun 2026
https://github.com/spinjet/pdopt-code
Public Release Version of PDOPT
design-space-exploration multi-disciplinary optimization set-based-design
Last synced: 20 Jun 2026
https://gitlab.com/materials-modeling/calorine
[A python tool box for GPUMD simulations](https://calorine.materialsmodeling.org/)
atomic scale simulation condensed matter physics force constants gpumd hiphive machine learning potentials molecular dynamics neural network potentials phonons physics python thermal conductivity thermal transport
Last synced: 20 Jun 2026
https://github.com/pyro-kinetics/pyrokinetics
Python library to run and analyse gyrokinetics simulations
Last synced: 20 Jun 2026
https://github.com/AlexanderJuestel/pyheatdemand
Processing Tool for Heat Demand Data
geospatial-data geospatial-data-analysis heatmaps spatial-data spatial-data-analysis
Last synced: 20 Jun 2026
https://github.com/vergauwenthomas/MetObs_toolkit
A toolkit for using non-traditional meteorological observations
climate meteorology python toolkit
Last synced: 20 Jun 2026
https://github.com/benlansdell/ethome
Tools for machine learning of animal behavior
boris deeplabcut dlc ndx-pose neurodata-without-borders pose-tracking supervised-learning
Last synced: 20 Jun 2026
https://github.com/thieu1995/permetrics
Artificial intelligence (AI, ML, DL) performance metrics implemented in Python
classification classification-report clustering-evaluation coefficient-of-determination deviation-of-runoff-volume evaluation-metrics kling-gupta-efficiency mae nash-sutcliffe-efficiency performance-metrics regression regression-methods relative-error rmse symmetric-mean-absolute-percentage willmott-index
Last synced: 20 Jun 2026
https://github.com/markur4/plotastic
Streamlining statistical analysis by using plotting keywords in Python.
anova data-analysis data-science data-visualization hypothesis-testing matplotlib omnibus pairwise-testing pingouin plotting python seaborn statistical-tests statistics ttest user-friendly
Last synced: 20 Jun 2026
https://github.com/konfound-project/konfound
R package for carrying out sensitivity analysis
Last synced: 20 Jun 2026
https://github.com/devnums/pyheartlib
A Python package for processing electrocardiogram signals ❤️
ecg electrocardiogram machine-learning
Last synced: 20 Jun 2026
https://github.com/pnnl/HyperNetX
Python package for hypergraph analysis and visualization.
hypergraph hypergraphs knowledge-graph property-hypergraphs python s-linegraph simplicial-complexes simplicial-homology
Last synced: 20 Jun 2026
https://github.com/moritzobenauer/ProjectRaccoon
Automated construction of atomistic and coarse-grained models in the PDB format for polymer peptide conjugates.
cheminformatics molecular-dynamics-simulation molecular-modeling pdb-files
Last synced: 20 Jun 2026
https://github.com/FAU-LAP/NOMAD-CAMELS
We are developing a configurable measurement software (CAMELS), targeted towards the requirements of experimental solid-state physics. Here many experiments utilize a multitude of measurement devices used in dynamically changing setups.
Last synced: 20 Jun 2026
https://github.com/chadagreene/Tide-Model-Driver
Tide Model Driver for MATLAB, version 3.0
Last synced: 20 Jun 2026
https://github.com/pylops/pyproximal/
PyProximal – Proximal Operators and Algorithms in Python
inverse-problems linear-algebra proximal-algorithms python
Last synced: 20 Jun 2026
https://github.com/FabianPlum/OmniTrax
Deep learning-driven multi animal tracking and pose estimation add-on for Blender
blender deeplabcut deeplearning object-detection tracking yolo
Last synced: 20 Jun 2026
https://github.com/seamplex/feenox/
Cloud-first free no-fee no-X uniX-like finite-element(ish) computational engineering tool
finite-elements hpc numerical-methods ode-solver pde-solver
Last synced: 20 Jun 2026
https://github.com/MedMaxLab/selfEEG
selfEEG: a Python library for Self-Supervised Learning on Electroencephalography (EEG) data
deep-learning eeg self-supervised-learning
Last synced: 20 Jun 2026
https://github.com/JuliaAI/Imbalance.jl
A Julia toolbox with resampling methods to correct for class imbalance.
class-imbalance classification machine-learning
Last synced: 20 Jun 2026
https://github.com/uw-comphys/shapelets
shapelets is a python package that implements several shapelet functions and some of their significant applications in science and astronomy.
Last synced: 20 Jun 2026
https://github.com/ahudde/greeks
Sensitivities of Prices of Financial Options and Implied Volatilites
asian-option greeks implied-volatility option r-package
Last synced: 20 Jun 2026
https://github.com/UTEL-UIUC/gtfs_segments
GTFS Segments: A fast and efficient library to generate bus stop spacings
bus distribution gtfs-feed python stop transit transit-data
Last synced: 20 Jun 2026
https://github.com/frank1010111/pywaterflood
Capacitance resistance models for waterflood connectivity
petroleum-engineering python reservoir rust
Last synced: 20 Jun 2026
https://github.com/suneeshjacob/ACRoD
Automatic Computation for Robot Design
Last synced: 20 Jun 2026
https://github.com/Open-Minds-Lab/MRdataset
MRdataset : unified interface to various neuroimaging dataset formats
mri neuroimaging neuroscience niqc quality-control
Last synced: 20 Jun 2026
https://github.com/firedrakeproject/checkpoint_schedules
Schedules for incremental checkpointing of adjoint simulations.
Last synced: 20 Jun 2026
https://github.com/kdm9/Acanthophis
A comprehensive, opinionated plant metagenomics and variant calling pipeline in Snakemake
Last synced: 20 Jun 2026
https://github.com/ropensci/quadkeyr
An R package designed to create raster images from QuadKey-identified data (Microsoft Bing Maps Tile System), aiming to simplify the analysis of Facebook mobility data.
geospatial quadkey raster rstats tilemap
Last synced: 20 Jun 2026
https://github.com/KingsburyLab/pyEQL
A Python library for solution chemistry
Last synced: 20 Jun 2026
https://github.com/HofstadterTools/HofstadterTools
A Python package for analyzing the Hofstadter model.
band-theory condensed-matter-physics electromagnetism fractals mathematical-physics quantum-hall-effect quantum-physics theoretical-physics topological-materials topological-order
Last synced: 20 Jun 2026
https://github.com/AndresRTejedor/Mold
Lammps package including square-like well potential to implement Mold integration and Lattice mold techniques
Last synced: 20 Jun 2026
https://github.com/Pometry/Raphtory
Scalable graph analytics database powered by a multithreaded, vectorized temporal engine, written in Rust
analytics database embedded-database graph graph-database olap python rust temporal time-series
Last synced: 20 Jun 2026
https://github.com/shaelebrown/TDApplied
An R package for statistics and machine learning with persistence diagrams
Last synced: 20 Jun 2026
https://github.com/Yu-Group/simChef
An R package to facilitate PCS simulation studies.
Last synced: 20 Jun 2026
https://github.com/hendr1km/dropout
tools for dropout analysis when working with survey data
Last synced: 20 Jun 2026
https://github.com/nla-group/fABBA
A Python library for the fast symbolic approximation of time series
dimensionality-reduction machine-learning symbolic-aggregate-approximation symbolic-representation time-series time-series-analysis time-series-classification time-series-clustering time-series-forecasting
Last synced: 20 Jun 2026
https://github.com/TRACER-LULab/Hyperelastics.jl
Hyperelastic Material modelling with support for Automatic Differentiation
finite-element-methods hyperelasticity material-model
Last synced: 20 Jun 2026
https://github.com/oleksulkowski/Syn-CpG-Spacer
A Panel progressive web app for synonymous recoding of viral genomes with CpG dinucleotides
dinucleotide-frequencies genetics genome-browser molecular-biology virology
Last synced: 20 Jun 2026
https://github.com/MREYE-LUMC/ZOSPy
Wrapper around the Zemax OpticStudio API. Provides a more pythonic and intuitive way to interact with the ZOS-API through python using a .NET connection.
optics optics-simulation opticstudio python zemax zos-api
Last synced: 20 Jun 2026
https://github.com/Qepanna/goFlux
goFlux: A user-friendly way to calculate GHG fluxes yourself, regardless of user experience
Last synced: 20 Jun 2026
https://github.com/ClapeyronThermo/GCIdentifier.jl
tools to perform group contribution (GC) identification, given the SMILES of a compound
group-contribution joback smiles-strings unifac
Last synced: 20 Jun 2026
https://github.com/newcleo-dev-team/lbh15
Compilation of thermo-physical properties for lead/bismuth-based liquid metals for fast reactor technology
liquid-metal nuclear-reactor thermodynamic-properties
Last synced: 20 Jun 2026
https://github.com/JuliaStats/HiddenMarkovModels.jl
A Julia package for simulation, inference and learning of Hidden Markov Models.
baum-welch forward-backward hidden-markov-model hmm julia markov statistics viterbi
Last synced: 20 Jun 2026
https://github.com/desResLab/LINFA
A Python library for variational inference with normalizing flow and annealing
annealing computational-expensive-models normalizing-flows variational-inference
Last synced: 20 Jun 2026
https://github.com/Toloka/crowd-kit
Control the quality of your labeled data with the Python tools you already know.
aggregations annotation crowd crowdsourcing data-mining data-science labeling python quality-control toloka truth-inference
Last synced: 20 Jun 2026
https://github.com/solislemuslab/minaa
MiNAA aligns a pair of networks based their topologies and biologies.
graal graph-algorithm graphlets interaction-network microbiome network-alignment orca
Last synced: 20 Jun 2026
https://github.com/GRTLCollaboration/GRDzhadzha
A code to evolve matter on curved spacetimes with an analytic time and space dependence, e.g. black holes
Last synced: 20 Jun 2026
https://github.com/caimeng2/seesus
A Python package that identifies 17 Sustainable Development Goals and their 169 Targets in text, and classifies into social, environmental, and economic sustainability.
classification regular-expressions sdg sustainability sustainability-developoment-goals text-mining
Last synced: 20 Jun 2026
https://github.com/KenethGarcia/ClassiPyGRB
This repository contains all the updates, code, and documentation related to ClassiPyGRB.
astrophysics grbs machine-learning machine-learning-algorithms unsupervised-learning unsupervised-machine-learning
Last synced: 20 Jun 2026
https://github.com/mcdc-project/mcdc
MC/DC: Monte Carlo Dynamic Code
high-performance-computing monte-carlo-simulation neutron-transport neutronics nuclear-engineering parallel particle-transport python radiation-transport simulation
Last synced: 20 Jun 2026
https://github.com/SongshGeoLab/ABSESpy
An Agent-based Social-ecological System python framework for coupling human-nature researches.
Last synced: 20 Jun 2026
https://github.com/tesselle/aion
Archaeological Time Series - :exclamation: Moved to https://codeberg.org/tesselle/aion
archaeological-science archaeology chronology r-package time-series
Last synced: 20 Jun 2026
https://github.com/CEA-MetroCarac/fitspy
Generic tool dedicated to fit spectra in python
decomposition fitting gaussian lmfit lorentzian map python spectral-analysis spectrum
Last synced: 20 Jun 2026
https://github.com/SMTG-Bham/doped
doped is a Python software for the generation, pre-/post-processing and analysis of defect supercell calculations, implementing the defect simulation workflow in an efficient, reproducible, user-friendly yet powerful and fully-customisable manner.
ab-initio computational-chemistry computational-materials-science defect-calculation defect-formation-energy defect-levels defect-thermodynamics defects dft doping fermi-level point-defects pymatgen semiconductors shakenbreak transition-levels vasp
Last synced: 20 Jun 2026
https://github.com/musoke/UltraDark.jl
Simulations of cosmological scalar fields
cosmology dark-matter julia reheating scalar-dark-matter
Last synced: 20 Jun 2026
https://github.com/mikejohnson51/AHGestimation/
Estimating robust, mass conserving AHG relationships
Last synced: 20 Jun 2026
https://github.com/robbievanleeuwen/section-properties
Analysis of an arbitrary cross-section in python using the finite element method.
computational-mechanics cross-section finite-element-analysis finite-element-method python stress-analysis structural-engineering
Last synced: 20 Jun 2026
https://github.com/Cosmoglobe/zodipy
Astropy-affiliated package for zodiacal light simulations. Maintainers: @metinsa, @hermda02, @dncnwtts
astronomy astropy-affiliated infrared-astronomy interplanetary-dust python simulation-physics simulations zodiacal-light
Last synced: 20 Jun 2026
https://github.com/tberlok/paicos
An object-oriented Python package for analysis of (cosmological) simulations performed with Arepo
Last synced: 20 Jun 2026
https://github.com/David-McKenna/udpPacketManager/
C Library for handling CEP packet data from an international LOFAR station
Last synced: 20 Jun 2026
https://github.com/bc3LC/gcamreport
Package to process GCAM results and standardize the format
Last synced: 20 Jun 2026
https://github.com/JGCRI/gcamfaostat
An R package to prepare, process, and synthesize FAOSTAT data for global agroeconomic and multisector dynamic modeling
Last synced: 20 Jun 2026
https://github.com/arup-group/pam
Generate and modify transport demand scenarios via a Python API.
arup city-modelling city-modelling-lab cml transit
Last synced: 20 Jun 2026
https://github.com/equitable-equations/fqar
The fqar package provides R tools for downloading and analyzing floristic quality assessment data from www.universalFQA.org
Last synced: 20 Jun 2026
https://github.com/IMMM-SFA/statemodify
A package to modify StateMod's input and output files for exploratory modeling
Last synced: 20 Jun 2026
https://github.com/DamynChipman/EllipticForest
A Direct Solver for Elliptic Partial Differential Equations on a Forest of Quadtree Meshes
Last synced: 20 Jun 2026
https://github.com/KennethEnevoldsen/augmenty
Augmenty is an augmentation library based on spaCy for augmenting texts.
augmentation natural-language-processing nlp nlproc python spacy spacy-extension spacy-nlp text-augmentation text-classification training-data
Last synced: 20 Jun 2026
https://github.com/dshawul/NebulaSEM
Finite Volume (FV) and high-order Discontinuous Galerkin (DG) solver
Last synced: 20 Jun 2026
https://github.com/jorgensd/adios4dolfinx
Extending DOLFINx with checkpointing functionality
adios2 checkpointing fenicsx mpi-applications
Last synced: 20 Jun 2026
https://github.com/GrainLearning/grainLearning
A Bayesian uncertainty quantification toolbox for discrete and continuum numerical models of granular materials, developed by various projects of the University of Twente (NL), the Netherlands eScience Center (NL), University of Newcastle (AU), and Hiroshima University (JP).
bayesian-inference low-discrepancy-sequences mixture-models parameter-identification sequential-monte-carlo uncertainty-quantification
Last synced: 20 Jun 2026
https://github.com/BRAIN-TO/GIRFReco.jl
An Open-Source End-to-End Pipeline for Spiral Magnetic Resonance Image (MRI) Reconstruction in Julia
mri mri-brain mri-reconstruction
Last synced: 20 Jun 2026
