Ecosyste.ms: Summary

https://github.com/PeerHerholz/BIDSonym/

a BIDS app for pseudo-anonymization of neuroimaging data

Last synced: 22 Aug 2026

https://github.com/lcpp-org/RustBCA

A free, open-source Binary Collision Approximation (BCA) code for ion-material interactions including sputtering, implantation, and reflection

bca bca-codes binary-collision-approximation binary-collisions bohdansky electronic-stopping fusion implantation incident-ion ion-material-interactions ion-solid-interactions materials-science nuclear-fusion nuclear-stopping plasma-material-interactions range rust simulation sputtering yamamura

Last synced: 22 Aug 2026

https://github.com/nluetts/NoisySignalIntegration.jl

A tool to determine uncertainty in numeric integrals of noisy x-y data.

noisy-data numeric-integrals uncertainty

Last synced: 22 Aug 2026

https://github.com/IMMM-SFA/diyepw/

Create EnergyPlus ready EPW files from observed data.

Last synced: 22 Aug 2026

https://github.com/esa/torchquad/

Numerical integration in arbitrary dimensions on the GPU using PyTorch / TF / JAX

automatic-differentiation gpu high-performance-computing integration machine-learning monte-carlo-integration multidimensional-integration numerical-integration python pytorch torchquad vegas vegas-enhanced

Last synced: 22 Aug 2026

https://github.com/MAnalytics/opitools

An R-package for opinion analysis of social media data

Last synced: 22 Aug 2026

https://github.com/nkallima/Synch-Framework

An open-source framework for concurrent data-structures and benchmarks. 🛠️ Latest Dev Branch: v3.4.0-dev 🚀 https://github.com/nkallima/Synch-Framework/tree/v3.4.0-dev

benchmarks cc-synch concurrency concurrent-programming concurrent-queues concurrent-stacks machine-architectures osci parallel-programming performance-impact performance-overheads psim pthreads queue-locks

Last synced: 22 Aug 2026

https://github.com/bshoshany/OGRe

An object-oriented general relativity package for Mathematica.

differential-geometry general-relativity scientific-computing tensor tensors

Last synced: 22 Aug 2026

https://github.com/mpi4jax/mpi4jax

Zero-copy MPI communication of JAX arrays, for turbo-charged HPC applications in Python :zap:

gpu high-performance-computing jax jit mpi parallel-computing xla

Last synced: 22 Aug 2026

https://github.com/grant-m-s/astronomicAL

An interactive, plugin-based platform for exploring, labelling, integrating, and modelling scientific data

active-learning astronomy data-visualization interactive labelling machine-learning plugin-system python

Last synced: 22 Aug 2026

https://github.com/BenMql/coral

Parallel spectral solver for partial differential equations in the plane layer geometry.

fluid-dynamics partial-differential-equations spectral-solver

Last synced: 22 Aug 2026

https://github.com/COVID-IWG/epimargin

networked, stochastic SIRD epidemiological model with Bayesian parameter estimation and policy scenario comparison tools

bayesian-methods covid19 india sird-model stochastic-modeling

Last synced: 22 Aug 2026

https://github.com/jessecambon/tidygeocoder

Geocoding Made Easy

geocoding r rspatial rstats tidyverse

Last synced: 22 Aug 2026

https://github.com/wesleyburr/subMaldi

subMaldi: a package for R

Last synced: 22 Aug 2026

https://github.com/hiddenSymmetries/simsopt

Simons Stellarator Optimizer Code

fusion nuclear-fusion optimization plasma plasma-physics stellarator stellarators

Last synced: 22 Aug 2026

https://github.com/skypyproject/skypy

SkyPy: A package for modelling the Universe.

astronomy astrophysics cosmology forward-modeling skypy

Last synced: 22 Aug 2026

https://github.com/nipy/nitransforms

a standalone fork of nipy/nibabel#656

Last synced: 22 Aug 2026

https://github.com/Saran-nns/sorn/

PyPi Package of Self-Organizing Recurrent Neural Networks (SORN) and Neuro-robotics using OpenAI Gym

associative-networks autonomous-agents bolzmann-machines brain-inspired-computing complex-networks cortical-learning cortical-network hebbian-learning hopfield-network machine-learning neuro-computing neuroinformatics neuroplasticity point-neurons reinforcement-learning reservoir-computing self-organizing-criticality self-organizing-network sorn

Last synced: 22 Aug 2026

https://github.com/MillionConcepts/lhorizon

lhorizon helps you find things in the Solar System.

ephemerides planetary-science python

Last synced: 22 Aug 2026

https://github.com/tidymodels/infer

An R package for tidyverse-friendly statistical inference

Last synced: 22 Aug 2026

https://github.com/tbep-tech/tbeptools

R package for Tampa Bay Estuary Program functions

data-analysis package tampa-bay tbep water-quality

Last synced: 22 Aug 2026

https://github.com/Isurwars/Correlation/

Correlation: A high-performance, Material Design GUI tool for the structural and dynamic analysis of liquids, amorphous solids, and crystalline materials. Beyond standard RDF and PAD, it now supports VDOS, VACF, S(Q), and XRD, with parallelized processing and support for major simulation formats (CAR, CELL, ARC, etc.).

Last synced: 22 Aug 2026

https://github.com/patrickfuchs/buildH

:computer: Build hydrogen atoms from united-atom molecular dynamics of lipids and calculate the order parameters.

lipids molecular-dynamics-simulation order-parameters python united-atom

Last synced: 22 Aug 2026

https://github.com/ecological-cities/home2park

home2park: Assess the spatial provision of urban parks

cities geoinformatics parks recreation spatial

Last synced: 22 Aug 2026

https://github.com/JGCRI/plutus

Last synced: 22 Aug 2026

https://github.com/mingzehuang/latentcor

latentcor is an R package provides estimation for latent correlation with mixed data types (continuous, binary, truncated and ternary).

data-analysis data-mining data-processing data-science data-structures machine-learning mixed-types r statistics

Last synced: 22 Aug 2026

https://github.com/tud-hri/travia

a Traffic data Visualization and Annotation tool

Last synced: 22 Aug 2026

https://github.com/feature-engine/feature_engine

Feature engineering and selection open-source Python library compatible with sklearn.

data-science feature-engineering feature-extraction feature-selection machine-learning python scikit-learn

Last synced: 22 Aug 2026

https://github.com/Materials-Consortia/optimade-python-tools

Tools for implementing and consuming OPTIMADE APIs in Python

openapi optimade optimade-api optimade-python optimade-specification python

Last synced: 22 Aug 2026

https://github.com/dmey/synthia

📈 🐍 Multidimensional synthetic data generation with Copula and fPCA models in Python

augmentation climate copula data-augmentation data-generation data-generator data-modelling data-science dependency-analysis dependency-modeling finance fpca functional-data machine-learning oversampling principal-component-analysis statistics synthetic-data weather xarray

Last synced: 22 Aug 2026

https://github.com/IMMM-SFA/cerf

The Capacity Expansion Regional Feasibility (CERF) model

Last synced: 22 Aug 2026

https://github.com/qpv-research-group/rayflare

Open-source, integrated optical modelling of complex stacks

multiscale-simulation optics physics ray-tracing raytracing rigorous-coupled-wave solar-cells transfer-matrix-method

Last synced: 22 Aug 2026

https://github.com/rob-luke/AuditoryStimuli.jl

Generate audiory stimuli

auditory auditory-stimuli sounds

Last synced: 22 Aug 2026

https://github.com/virtual-vehicle/pointcloudset/

Efficient analysis of large datasets of point clouds recorded over time

4d-point-cloud convert las lidar lidar-point-cloud livox open3d ouster point-cloud pointcloud python riegl ros ros2 rosbag rostopic time-series time-series-analysis velodyne-sensor

Last synced: 22 Aug 2026

https://github.com/antoinediez/Sisyphe

Simulation of Systems of interacting mean-field Particles with High Efficiency

agent-based-model agent-based-simulation gpu mean-field particles self-organization swarming

Last synced: 22 Aug 2026

https://github.com/fandreuz/BisPy

BisPy - Python bisimulation library

algorithms bisimulation graph-algorithms graph-theory hacktoberfest python

Last synced: 22 Aug 2026

https://github.com/champsproject/ldds

Python package for computing and visualizing Lagrangian Descriptors in Dynamical Systems

dynamical-systems lagrangian-descriptors python

Last synced: 22 Aug 2026

https://github.com/nonlocalmodels/NLMech

Implementation of finite element and finite difference approximation of Nonlocal models

computational-mechanics fracture nonlocalmodels peridynamics

Last synced: 22 Aug 2026

https://github.com/jbytecode/JMcDM

A package for Multiple criteria decision-making techniques in Julia

julia mcdm multiple-criteria-decision-making optimization

Last synced: 22 Aug 2026

https://github.com/orbisgis/geoclimate/

Geospatial processing toolbox for environmental and climate studies

climate-change environment gis

Last synced: 22 Aug 2026

https://github.com/RiccardoBiondi/segmentation

COVID-19 Lung Segmentation

covid-19 ct-images lung-regions segmentation

Last synced: 22 Aug 2026

https://github.com/dfujim/bfit

A Python application for the analysis of β-NMR and β-NQR data taken at TRIUMF.

b-nmr b-nqr triumf

Last synced: 22 Aug 2026

https://github.com/the-matter-lab/funsies

funsies is a lightweight workflow engine 🔧

automation data-engineering data-ops hashtree infrastructure python redis workflow-engine

Last synced: 22 Aug 2026

https://github.com/intelligent-soft-robots/o80

synchronization of c++ processes via a custom python API

Last synced: 22 Aug 2026

https://github.com/andr1976/HydDown

Hydrogen (or other pure species) depressurization calculations

blow-down coolprop depressurisation gas-phase heat-transfer pressure python relief-valve thermodynamics

Last synced: 22 Aug 2026

https://github.com/spinicist/riesling

Radial Interstices Enable Speedy Low-Volume Imaging

Last synced: 22 Aug 2026

https://github.com/mrc-ide/individual

R Package for individual based epidemiological models

agent-based-modeling epidemiology individual-based-modelling infectious-diseases r r-package rstats

Last synced: 22 Aug 2026

https://gitlab.com/manchester_qbi/manchester_qbi_public/madym_cxx/

New public version of the QBI's labs library for DCE analysis

Last synced: 22 Aug 2026

https://github.com/tresoldi/ngesh

A Python library for generating random phylogenetic trees and related data

Last synced: 22 Aug 2026

https://github.com/oneilsh/tidytensor

Utilities for multidimensional arrays as named hierarchical structures

Last synced: 22 Aug 2026

https://github.com/freelawproject/eyecite

Find legal citations in any block of text

Last synced: 22 Aug 2026

https://github.com/FLCAC-admin/LCIAformatter

Standardizes the format and flows of life cycle impact assessment (LCIA) data.

Last synced: 22 Aug 2026

https://github.com/ME-ICA/tedana

TE-dependent analysis of multi-echo fMRI

brain-imaging fmri neuroimaging python

Last synced: 22 Aug 2026

https://github.com/vaneseltine/nominally

A maximum-strength name parser for record linkage.

data-matching data-science deduplication entity-resolution human-name parser parsing record-linkage

Last synced: 22 Aug 2026

https://github.com/mad-lab-fau/BioPsyKit

A Python package for the analysis of biopsychological data.

acute-stress amylase biomarkers biosignals cortisol ecg-processing health-psychology psychology python questionnaires statistics stress-protocols

Last synced: 22 Aug 2026

https://github.com/npucino/sandpyper

Tools for beach volumetric and behavioral dynamics monitoring from multitemporal UAV-SfM datasets.

beach coastal-dynamics erosion remote-sensing satellite-data shoreline uav-imagery

Last synced: 22 Aug 2026

https://github.com/AFD-Illinois/iharm3d/

Hybrid MPI/OpenMP 3D HARM with vectorization

Last synced: 22 Aug 2026

https://github.com/amkram/shusher

Private, browser-based placement of genome sequences on phylogenetic trees using UShER.

Last synced: 22 Aug 2026

https://github.com/hpi-dhc/devicely/

Devicely: A Python package for reading, timeshifting and writing sensor data

Last synced: 22 Aug 2026

https://gitlab.com/jason-rumengan/pyarma

PyArmadillo - linear algebra library for Python with MATLAB-like syntax - https://pyarma.sourceforge.io

BLAS C++ LAPACK Scientifc Computing linear algebra matlab python

Last synced: 22 Aug 2026

https://github.com/DrafProject/elmada

Dynamic electricity carbon emission factors and prices for Europe

carbon-emissions demand-response electricity-market electricity-prices energy-system-modeling marginal-emissions python

Last synced: 22 Aug 2026

https://github.com/VBlesius/RHRT

R package to assess Heart Rate Turbulence from RR interval data

Last synced: 22 Aug 2026

https://github.com/soraxas/sbp-env

Motion planning environment for Sampling-based Planners

motion-planning pathfinding robotics rrdt rrt rrt-star

Last synced: 22 Aug 2026

https://github.com/Open-ET/flux-data-qaqc

Energy Balance Closure Analysis and Eddy Flux Data Post-Processing

Last synced: 22 Aug 2026

https://github.com/fgjorup/Reel/

Reel1.0 is a visualization tool for powder diffraction data and refinement results, intended for in-situ, operando, or similar larges datasets.

diffraction parametric-refinement pxrd python rietveld-refinement

Last synced: 22 Aug 2026

https://github.com/weblyzard/inscriptis/

A python based HTML to text conversion library, command line client and Web service.

client converter html html2text library python web-service

Last synced: 22 Aug 2026

https://github.com/torchgan/torchgan/

Research Framework for easy and efficient training of GANs based on Pytorch

computer-vision deep-learning gans generative-adversarial-networks generative-model machine-learning neural-networks python python3 pytorch

Last synced: 22 Aug 2026

https://github.com/ArneTillmann/AuDoLab

Last synced: 22 Aug 2026

https://github.com/d3group/ddop

Data-Driven operations management - https://d3group.github.io/ddop

Last synced: 22 Aug 2026

https://github.com/Shyentist/fish-r-man

A bundle of analytics tools for fisheries scientists

dashboard fisheries fisheries-management fisheries-research fishing-effort global-fishing-watch globalfishingwatch marine-biology open-source r r-package shiny

Last synced: 22 Aug 2026

https://github.com/IMMM-SFA/gamut

An R package to identify multi-sector teleconnection complexity

Last synced: 22 Aug 2026

https://github.com/kineticstoolkit/kineticstoolkit

An Open-Source Python Package to Facilitate Research in Biomechanics

api biomechanics kinematics kinetics python toolbox

Last synced: 22 Aug 2026

https://github.com/thomgrand/fim-python

This repository implements the Fast Iterative Method (FIM) for use in python

Last synced: 22 Aug 2026

https://github.com/MikeSmithLabTeam/particletracker

Last synced: 22 Aug 2026

https://github.com/ejikeugba/serp

Smooth Effects on Response Penalty for CLM

categorical-data ordinal-regression penalized-regression proportional-odds-regression regularization-techniques

Last synced: 22 Aug 2026

https://github.com/wilkelab/Opfi

A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.

Last synced: 22 Aug 2026

https://github.com/hyriver/hyriver.github.io

A Python software stack for retrieving hydroclimate data from web services.

climate data hydrology python webservice

Last synced: 22 Aug 2026

https://github.com/SWE-UniStuttgart/Qlunc

A numerical framework to estimate hardware, data processing and pointing uncertainties of ground-based Doppler wind lidars

jupyterlab openlidar python uncertainty wind-lidar

Last synced: 22 Aug 2026

https://github.com/galsci/pysm

PySM 3: Sky emission simulations for Cosmic Microwave Background experiments

cosmic-microwave-background cosmology healpix healpy mpi python

Last synced: 22 Aug 2026

https://github.com/CNelias/CategoricalTimeSeries.jl

Toolbox for categorical time-series analysis.

categorical-data julia time-series-analysis

Last synced: 22 Aug 2026

https://github.com/martin3141/spant

Tools for reading, visualising and processing Magnetic Resonance Spectroscopy data

brain cran mri mrs mrshub spectroscopy

Last synced: 22 Aug 2026

https://github.com/aalfons/robustHD/

Robust methods for high-dimensional data, in particular linear model selection techniques based on least angle regression and sparse regression.

Last synced: 22 Aug 2026

https://github.com/CLARIAH/grlc

grlc builds Web APIs using shared SPARQL queries

api linked-data linked-data-api open-api semantic-web sparql swagger-ui

Last synced: 22 Aug 2026

https://github.com/ropensci/excluder/

Checks for Exclusion Criteria in Online Data

datacleaning exclusion mturk qualtrics r r-package rstats

Last synced: 22 Aug 2026

https://github.com/athulpg007/AMAT

Home of the Aerocapture Mission Analysis Tool (AMAT). For project documentation visit:

Last synced: 22 Aug 2026

https://github.com/jorisparet/partycls

Unsupervised learning of structure in systems of interacting particles.

clustering machine-learning molecular-dynamics physics python

Last synced: 22 Aug 2026

https://github.com/vinisalazar/BioProv/

A provenance library for bioinformatics workflows 🧬 🔀 📝

biological-data biopython prov provenance python w3c-prov

Last synced: 22 Aug 2026

https://github.com/ropensci/cffr

Generate Citation File Format (cff) Metadata for R Packages

attribution cff citation citation-file-format citation-files cran metadata r r-cran r-package ropensci rstats

Last synced: 22 Aug 2026

https://github.com/lantunes/cellpylib

A library for working with Cellular Automata, for Python.

cellular-automata complex-systems complexity computation nonlinear-dynamics

Last synced: 22 Aug 2026

https://github.com/hetalang/heta-compiler

Software tool for the compilation of Heta-based QSP modeling platform

pharmacodynamics pharmacometrics qsp-modeling systems-biology systems-pharmacology

Last synced: 22 Aug 2026

https://github.com/pikarpov-LANL/Sapsan

ML-based turbulence modeling for astrophysics

astrophysics machine-learning pytorch turbulence

Last synced: 22 Aug 2026