mcbette

Score: 9.227197489042606

Last synced: about 3 hours ago
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Repository metadata:

Model Comparison using babette

Host: GitHub
URL: https://github.com/ropensci/mcbette
Owner: ropensci
License: gpl-3.0
Created: 2018-11-24T16:52:52.000Z (over 7 years ago)
Default Branch: master
Last Pushed: 2025-10-29T13:11:25.000Z (8 months ago)
Last Synced: 2026-04-16T21:30:43.461Z (2 months ago)
Language: R
Size: 26.7 MB
Stars: 7
Watchers: 2
Forks: 3
Open Issues: 3
Metadata Files:
- Readme: README.Rmd
- Changelog: NEWS.md
- Contributing: CONTRIBUTING.md
- License: LICENSE
- Citation: CITATION.cff
- Codemeta: codemeta.json

CodeMeta metadata:

@context:
- https://doi.org/10.5063/schema/codemeta-2.0
- http://schema.org
@type: SoftwareSourceCode
Identifier: mcbette
Description: 'BEAST2' () is a widely used Bayesian phylogenetic tool, that uses DNA/RNA/protein data and many model priors to create a posterior of jointly estimated phylogenies and parameters. 'mcbette' allows to do a Bayesian model comparison over some site and clock models, using 'babette' ().
Name: mcbette: Model Comparison Using 'babette'
Code repository: https://github.com/ropensci/mcbette
Issue tracker: https://github.com/ropensci/mcbette/issues
License: https://spdx.org/licenses/GPL-3.0
Version: 1.8.4
Programming language:
- @type: ComputerLanguage
- Name: R
- Url: https://r-project.org
Runtime platform: R version 3.6.3 (2020-02-29)
Author:
- - @type: Person
  - Given name: Richèl J.C.
  - Family name: Bilderbeek
  - Email: richel@richelbilderbeek.nl
  - @id: https://orcid.org/0000-0003-1107-7049
Contributor:
Copyright holder:
Funder:
Maintainer:
- - @type: Person
  - Given name: Richèl J.C.
  - Family name: Bilderbeek
  - Email: richel@richelbilderbeek.nl
  - @id: https://orcid.org/0000-0003-1107-7049
Software suggestions:
- - @type: SoftwareApplication
  - Identifier: ape
  - Name: ape
  - Provider:
    - @id: https://cran.r-project.org
    - @type: Organization
    - Name: Comprehensive R Archive Network (CRAN)
    - Url: https://cran.r-project.org
  - Same as: https://CRAN.R-project.org/package=ape
- - @type: SoftwareApplication
  - Identifier: devtools
  - Name: devtools
  - Provider:
    - @id: https://cran.r-project.org
    - @type: Organization
    - Name: Comprehensive R Archive Network (CRAN)
    - Url: https://cran.r-project.org
  - Same as: https://CRAN.R-project.org/package=devtools
- - @type: SoftwareApplication
  - Identifier: ggplot2
  - Name: ggplot2
  - Provider:
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    - @type: Organization
    - Name: Comprehensive R Archive Network (CRAN)
    - Url: https://cran.r-project.org
  - Same as: https://CRAN.R-project.org/package=ggplot2
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  - Same as: https://CRAN.R-project.org/package=hunspell
- - @type: SoftwareApplication
  - Identifier: knitr
  - Name: knitr
  - Provider:
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    - Name: Comprehensive R Archive Network (CRAN)
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  - Same as: https://CRAN.R-project.org/package=knitr
- - @type: SoftwareApplication
  - Identifier: lintr
  - Name: lintr
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    - Name: Comprehensive R Archive Network (CRAN)
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  - Same as: https://CRAN.R-project.org/package=lintr
- - @type: SoftwareApplication
  - Identifier: nLTT
  - Name: nLTT
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    - Name: Comprehensive R Archive Network (CRAN)
    - Url: https://cran.r-project.org
  - Same as: https://CRAN.R-project.org/package=nLTT
- - @type: SoftwareApplication
  - Identifier: phangorn
  - Name: phangorn
  - Provider:
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    - @type: Organization
    - Name: Comprehensive R Archive Network (CRAN)
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  - Same as: https://CRAN.R-project.org/package=phangorn
- - @type: SoftwareApplication
  - Identifier: rappdirs
  - Name: rappdirs
  - Provider:
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    - Url: https://cran.r-project.org
  - Same as: https://CRAN.R-project.org/package=rappdirs
- - @type: SoftwareApplication
  - Identifier: rmarkdown
  - Name: rmarkdown
  - Provider:
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    - @type: Organization
    - Name: Comprehensive R Archive Network (CRAN)
    - Url: https://cran.r-project.org
  - Same as: https://CRAN.R-project.org/package=rmarkdown
- - @type: SoftwareApplication
  - Identifier: spelling
  - Name: spelling
  - Provider:
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    - Url: https://cran.r-project.org
  - Same as: https://CRAN.R-project.org/package=spelling
- - @type: SoftwareApplication
  - Identifier: stringr
  - Name: stringr
  - Provider:
    - @id: https://cran.r-project.org
    - @type: Organization
    - Name: Comprehensive R Archive Network (CRAN)
    - Url: https://cran.r-project.org
  - Same as: https://CRAN.R-project.org/package=stringr
- - @type: SoftwareApplication
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  - Version: >= 2.1.0
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  - Same as: https://CRAN.R-project.org/package=testthat
- - @type: SoftwareApplication
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  - Name: tracerer
  - Provider:
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    - @type: Organization
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  - Same as: https://CRAN.R-project.org/package=tracerer
Software requirements:
- - @type: SoftwareApplication
  - Identifier: babette
  - Name: babette
  - Provider:
    - @id: https://cran.r-project.org
    - @type: Organization
    - Name: Comprehensive R Archive Network (CRAN)
    - Url: https://cran.r-project.org
  - Same as: https://CRAN.R-project.org/package=babette
- - @type: SoftwareApplication
  - Identifier: beautier
  - Name: beautier
  - Version: >= 2.4
  - Provider:
    - @id: https://cran.r-project.org
    - @type: Organization
    - Name: Comprehensive R Archive Network (CRAN)
    - Url: https://cran.r-project.org
  - Same as: https://CRAN.R-project.org/package=beautier
- - @type: SoftwareApplication
  - Identifier: beastier
  - Name: beastier
  - Version: >= 2.2
  - Provider:
    - @id: https://cran.r-project.org
    - @type: Organization
    - Name: Comprehensive R Archive Network (CRAN)
    - Url: https://cran.r-project.org
  - Same as: https://CRAN.R-project.org/package=beastier
- - @type: SoftwareApplication
  - Identifier: curl
  - Name: curl
  - Provider:
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    - @type: Organization
    - Name: Comprehensive R Archive Network (CRAN)
    - Url: https://cran.r-project.org
  - Same as: https://CRAN.R-project.org/package=curl
- - @type: SoftwareApplication
  - Identifier: mauricer
  - Name: mauricer
  - Provider:
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    - @type: Organization
    - Name: Comprehensive R Archive Network (CRAN)
    - Url: https://cran.r-project.org
  - Same as: https://CRAN.R-project.org/package=mauricer
- - @type: SoftwareApplication
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  - Name: Rmpfr
  - Provider:
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    - @type: Organization
    - Name: Comprehensive R Archive Network (CRAN)
    - Url: https://cran.r-project.org
  - Same as: https://CRAN.R-project.org/package=Rmpfr
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  - Name: testit
  - Provider:
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    - @type: Organization
    - Name: Comprehensive R Archive Network (CRAN)
    - Url: https://cran.r-project.org
  - Same as: https://CRAN.R-project.org/package=testit
- - @type: SoftwareApplication
  - Identifier: txtplot
  - Name: txtplot
  - Provider:
    - @id: https://cran.r-project.org
    - @type: Organization
    - Name: Comprehensive R Archive Network (CRAN)
    - Url: https://cran.r-project.org
  - Same as: https://CRAN.R-project.org/package=txtplot
Release notes: https://github.com/ropensci/mcbette/blob/master/NEWS.md
Readme: https://github.com/ropensci/mcbette/blob/master/README.md
File size: 0KB
Cont integration:
- https://travis-ci.org
- https://www.appveyor.com
- https://www.codecov.io
- https://travis-ci.org/ropensci/mcbette
- https://ci.appveyor.com/project/ropensci/mcbette
- https://codecov.io/github/ropensci/mcbette?branch=master
- https://travis-ci.org/ropensci/mcbette
- https://ci.appveyor.com/project/ropensci/mcbette
- https://codecov.io/github/ropensci/mcbette?branch=develop
Review:
- @type: Review
- Url: https://github.com/ropensci/software-review/issues/360
- Provider: https://ropensci.org

Owner metadata:

Name: rOpenSci
Login: ropensci
Email: info@ropensci.org
Kind: organization
Description:
Website: https://ropensci.org/
Location: Berkeley, CA
Twitter: rOpenSci
Company:
Icon url: https://avatars.githubusercontent.com/u/1200269?v=4
Repositories: 307
Last Synced at: 2023-03-10T20:30:59.242Z
Profile URL: https://github.com/ropensci

GitHub Events

Total

Push event: 1
Total: 1

Last Year

Push event: 1
Total: 1

Committers metadata

Last synced: 8 months ago

Total Commits: 717
Total Committers: 3
Avg Commits per committer: 239.0
Development Distribution Score (DDS): 0.017

Commits in past year: 0
Committers in past year: 0
Avg Commits per committer in past year: 0.0
Development Distribution Score (DDS) in past year: 0.0

Name	Email	Commits
richelbilderbeek	r**l@r**l	705
Richel Bilderbeek	r****k	10
Maëlle Salmon	m**n@y**e	2

Issue and Pull Request metadata

Last synced: 10 months ago

Total issues: 42
Total pull requests: 3
Average time to close issues: 24 days
Average time to close pull requests: about 10 hours
Total issue authors: 5
Total pull request authors: 2
Average comments per issue: 2.67
Average comments per pull request: 2.0
Merged pull request: 3
Bot issues: 0
Bot pull requests: 0

Past year issues: 0
Past year pull requests: 1
Past year average time to close issues: N/A
Past year average time to close pull requests: 1 day
Past year issue authors: 0
Past year pull request authors: 1
Past year average comments per issue: 0
Past year average comments per pull request: 1.0
Past year merged pull request: 1
Past year bot issues: 0
Past year bot pull requests: 0

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/ropensci/mcbette

Top Issue Authors

richelbilderbeek (35)
thijsjanzen (4)
dksam (1)
cjwoodruff50 (1)
stefaniebutland (1)

Top Pull Request Authors

maelle (2)
olivroy (2)

Top Issue Labels

depends (2)
medium (1)
high (1)

Top Pull Request Labels

Package metadata

Total packages: 1
Total downloads:
- cran: 287 last-month
Total docker downloads: 48
Total dependent packages: 1
Total dependent repositories: 1
Total versions: 6
Total maintainers: 1

cran.r-project.org: mcbette

Model Comparison Using 'babette'

Homepage: https://github.com/ropensci/mcbette/
Documentation: http://cran.r-project.org/web/packages/mcbette/mcbette.pdf
Licenses: GPL-3
Latest release: 1.15.3 (published almost 2 years ago)
Last Synced: 2025-10-30T04:13:32.772Z (8 months ago)
Versions: 6
Dependent Packages: 1
Dependent Repositories: 1
Downloads: 287 Last month
Docker Downloads: 48
Rankings:
- Forks count: 14.337%
- Dependent packages count: 18.292%
- Stargazers count: 19.45%
- Average: 20.229%
- Dependent repos count: 24.199%
- Downloads: 24.868%
Maintainers (1)
- rjcbilderbeek@gmail.com

Dependencies

DESCRIPTION cran

Rmpfr * imports
babette >= 2.3 imports
beastier >= 2.4.6 imports
beautier >= 2.6.2 imports
curl * imports
devtools * imports
mauricer >= 2.5 imports
testit * imports
txtplot * imports
ape * suggests
ggplot2 * suggests
hunspell * suggests
knitr * suggests
lintr * suggests
markdown * suggests
nLTT * suggests
phangorn * suggests
rappdirs * suggests
rmarkdown * suggests
spelling * suggests
stringr * suggests
testthat >= 2.1.0 suggests
tracerer * suggests

.github/workflows/R-CMD-check.yaml actions

actions/checkout v2 composite
r-lib/actions/setup-pandoc v2 composite
r-lib/actions/setup-r v2 composite

ecosyste.ms

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Indexes

Applications

Experiments

Summary