JOSS: https://github.com/Qile0317/APackOfTheClones
clonal-analysis immune-repertoire immune-system r scrna-seq scrnaseq seurat single-cell single-cell-genomics
Score: 8.812248018197431
Last synced: about 2 hours ago
JSON representation
Repository metadata:
Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of clonal expansion at a single cell resolution, by representing expanded clones as differently sized circles.
- Host: GitHub
- URL: https://github.com/Qile0317/APackOfTheClones
- Owner: Qile0317
- License: other
- Created: 2022-10-14T23:09:09.000Z (almost 4 years ago)
- Default Branch: main
- Last Pushed: 2025-08-28T21:54:25.000Z (12 months ago)
- Last Synced: 2026-06-15T18:04:36.981Z (2 months ago)
- Topics: clonal-analysis, immune-repertoire, immune-system, r, scrna-seq, scrnaseq, seurat, single-cell, single-cell-genomics
- Language: R
- Homepage: https://qile0317.github.io/APackOfTheClones/
- Size: 182 MB
- Stars: 21
- Watchers: 0
- Forks: 2
- Open Issues: 2
-
Metadata Files:
- Readme: README.md
- Changelog: NEWS.md
- Contributing: CONTRIBUTING.md
- License: LICENSE
- Code of conduct: CODE_OF_CONDUCT.md
- Citation: CITATION.cff
Owner metadata:
- Name: Qile
- Login: Qile0317
- Email:
- Kind: user
- Description: high school senior with interest in bioinformatics/ML
- Website: qile0317.github.io
- Location: Sweden
- Twitter:
- Company: IEGS
- Icon url: https://avatars.githubusercontent.com/u/43093685?u=d48ab9b51e1be481d1a9a419a0f1d042379c55ec&v=4
- Repositories: 3
- Last Synced at: 2023-04-07T14:21:07.311Z
- Profile URL: https://github.com/Qile0317
GitHub Events
Total
- Create event: 1
- Fork event: 1
- Issue comment event: 11
- Issues event: 8
- Pull request event: 5
- Pull request review comment event: 2
- Pull request review event: 3
- Push event: 66
- Release event: 1
- Watch event: 3
- Total: 101
Last Year
- Push event: 1
- Total: 1
Committers metadata
Last synced: 1 day ago
Total Commits: 521
Total Committers: 1
Avg Commits per committer: 521.0
Development Distribution Score (DDS): 0.0
Commits in past year: 1
Committers in past year: 1
Avg Commits per committer in past year: 1.0
Development Distribution Score (DDS) in past year: 0.0
| Name | Commits | |
|---|---|---|
| Qile0317 | q****7@g****m | 521 |
Issue and Pull Request metadata
Last synced: 1 day ago
Total issues: 18
Total pull requests: 10
Average time to close issues: 7 days
Average time to close pull requests: about 8 hours
Total issue authors: 6
Total pull request authors: 1
Average comments per issue: 0.89
Average comments per pull request: 0.0
Merged pull request: 8
Bot issues: 0
Bot pull requests: 0
Past year issues: 0
Past year pull requests: 0
Past year average time to close issues: N/A
Past year average time to close pull requests: N/A
Past year issue authors: 0
Past year pull request authors: 0
Past year average comments per issue: 0
Past year average comments per pull request: 0
Past year merged pull request: 0
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- Qile0317 (9)
- skanwal (5)
- eba28 (1)
- teunbrand (1)
- ncborcherding (1)
- nina-ng (1)
Top Pull Request Authors
- Qile0317 (10)
Top Issue Labels
- enhancement (3)
- joss (1)
Top Pull Request Labels
Package metadata
- Total packages: 3
-
Total downloads:
- cran: 291 last-month
- Total dependent packages: 0 (may contain duplicates)
- Total dependent repositories: 0 (may contain duplicates)
- Total versions: 30
- Total maintainers: 1
proxy.golang.org: github.com/Qile0317/APackOfTheClones
- Homepage:
- Documentation: https://pkg.go.dev/github.com/Qile0317/APackOfTheClones#section-documentation
- Licenses: other
- Latest release: v1.3.0 (published about 1 year ago)
- Last Synced: 2026-08-20T01:53:34.854Z (1 day ago)
- Versions: 11
- Dependent Packages: 0
- Dependent Repositories: 0
-
Rankings:
- Dependent packages count: 5.421%
- Average: 5.603%
- Dependent repos count: 5.785%
proxy.golang.org: github.com/qile0317/apackoftheclones
- Homepage:
- Documentation: https://pkg.go.dev/github.com/qile0317/apackoftheclones#section-documentation
- Licenses: other
- Latest release: v1.3.0 (published about 1 year ago)
- Last Synced: 2026-08-20T01:32:39.611Z (1 day ago)
- Versions: 11
- Dependent Packages: 0
- Dependent Repositories: 0
-
Rankings:
- Dependent packages count: 5.421%
- Average: 5.603%
- Dependent repos count: 5.785%
cran.r-project.org: APackOfTheClones
Visualization of Clonal Expansion for Single Cell Immune Profiles
- Homepage: https://qile0317.github.io/APackOfTheClones/
- Documentation: http://cran.r-project.org/web/packages/APackOfTheClones/APackOfTheClones.pdf
- Licenses: MIT + file LICENSE
- Latest release: 1.3.0 (published about 1 year ago)
- Last Synced: 2026-08-20T01:31:38.716Z (1 day ago)
- Versions: 8
- Dependent Packages: 0
- Dependent Repositories: 0
- Downloads: 291 Last month
-
Rankings:
- Stargazers count: 16.541%
- Forks count: 20.984%
- Downloads: 21.342%
- Average: 24.622%
- Dependent packages count: 28.166%
- Dependent repos count: 36.078%
- Maintainers (1)
Dependencies
- actions/checkout v3 composite
- r-lib/actions/check-r-package v2 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-r-dependencies v2 composite
- JamesIves/github-pages-deploy-action v4.4.1 composite
- actions/checkout v3 composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-r-dependencies v2 composite
- actions/checkout v3 composite
- actions/upload-artifact v3 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-r-dependencies v2 composite
- R >= 3.5.0 depends
- Rcpp * imports
- Seurat * imports
- data.table * imports
- dplyr * imports
- ggforce * imports
- ggplot2 * imports
- grDevices * imports
- hash * imports
- rlang * imports
- stats * imports
- utils * imports
- covr * suggests
- knitr * suggests
- rmarkdown * suggests
- sf * suggests
- spelling * suggests
- testthat >= 3.0.0 suggests
- vdiffr * suggests
- xml2 * suggests