JOSS collection | Ecosyste.ms: Summary

https://github.com/ellessenne/rsimsum/

Analysis of simulation studies including Monte Carlo error

biostatistics monte-carlo-error r rstats simulation simulation-study simulations statistics

Last synced: 27 Aug 2026

https://github.com/mad-lab-fau/tpcp/

Pipeline and Dataset helpers for complex algorithm evaluation.

algorithms biosignals data-management data-science machine-learning python

Last synced: 27 Aug 2026

https://github.com/brian-rose/climlab/

Python package for process-oriented climate modeling

Last synced: 27 Aug 2026

https://github.com/SolavLab/DuoDIC

Stereo 3D Digital Image Correlation (3D-DIC) MATLAB toolbox

Last synced: 27 Aug 2026

https://github.com/alawryaguila/multi-view-AE

Multi-view-AE: An extensive collection of multi-modal autoencoders implemented in a modular, scikit-learn style framework.

autoencoder multi-modal multi-modal-autoencoder multi-modal-variational-autoencoder multivae multiview multiviewae mvae representation-learning variational-autoencoder

Last synced: 27 Aug 2026

https://github.com/MikeHeiber/Excimontec

Excimontec is an open-source KMC simulation software package for modeling the optoelectronic processes in organic semiconductor materials and devices, such as OPVs, OLEDs, and more.

kinetic-monte-carlo mpi organic-semiconductors

Last synced: 27 Aug 2026

https://github.com/ropensci/tidyqpcr

quantitative PCR analysis in the tidyverse

miqe qpcr qpcr-analysis r r-package rstats tidyverse

Last synced: 27 Aug 2026

https://github.com/pierrepeterlongo/back_to_sequences/

Last synced: 27 Aug 2026

https://github.com/baxmittens/OpenGeoSysUncertaintyQuantification.jl

An uncertainty quantification toolbox for OpenGeoSys 6

Last synced: 28 Aug 2026

https://gitlab.com/pyFBS/pyFBS

A Python package for Frequency Based Substructuring and Transfer Path Analysis

3D viewer FRF synthetisation MCK model System Equivalent Modal Mixing Virtual Point Transformation

Last synced: 27 Aug 2026

https://github.com/ropensci-archive/bittrex

:warning: ARCHIVED :warning: A R Client for the Bittrex Crypto-Currency Exchange

crypto-currency-exchanges finance peer-reviewed r r-package rstats

Last synced: 27 Aug 2026

https://github.com/PopMedNet-Team/popmednet

This is the repository for the open source code of the distributed data network platform PopMedNet

Last synced: 27 Aug 2026

https://github.com/usnistgov/ChebTools

C++ tools for working with Chebyshev expansion interpolants

Last synced: 27 Aug 2026

https://github.com/phpuech/OT_Analysis

Software for optical data force analysis / JPK Nanowizard

Last synced: 27 Aug 2026

https://github.com/ctkelley/MultiPrecisionArrays.jl

Mulitprecision Arrays

iterative-methods iterative-refinement linear-solvers multiprecision

Last synced: 27 Aug 2026

https://github.com/palaimon/ipyannotator/

the infinitely hackable annotation framework

annotation-tool annotations hacktoberfest ipycanvas ipywidgets labeling labeling-tool nbdev voila

Last synced: 27 Aug 2026

https://github.com/SevgiAkten/pycellga

Cellular Genetic Algorithms in Python.

cellulargeneticalgorithm cga ieee-754 machinecodedoperators optimization python

Last synced: 27 Aug 2026

https://github.com/WMD-group/PyTASER

Python package to simulate differential absorption spectra of crystals from first principles

computational-chemistry materials-science semiconductor-physics solar-fuel spectroscopy

Last synced: 27 Aug 2026

https://github.com/hendr1km/dropout

tools for dropout analysis when working with survey data

Last synced: 27 Aug 2026

https://github.com/dstansby/pfsspy

Potential Field Source Surface model package for Python

physics python solar-physics sun

Last synced: 27 Aug 2026

https://github.com/loftytopping/PyBox

A box-model that automatically creates and solves equations used to describe the evolution in atmospheric composition using Python with Numba and, optionally, Fortran.

atmospheric-science chemistry fortran numba

Last synced: 27 Aug 2026

https://github.com/LidkeLab/smite

Single Molecule Imaging Toolbox Extraordinaire

Last synced: 27 Aug 2026

https://github.com/ethicsai/ethical-smart-grid

Reinforcement learning environment for learning ethical behaviours in a SmartGrid use-case.

ai-ethics artificial-intelligence gym-environment machine-ethics python reinforcement-learning smart-grid

Last synced: 27 Aug 2026

https://github.com/palaeoware/revosim

REvoSim - The [R]apid [Evo]lutionary [Sim]ulator - An individual-based evolutionary model

Last synced: 27 Aug 2026

https://github.com/KVSlab/VaMPy

A collection of tools for pre-processing, simulating, and post-processing vascular morphologies.

computational-fluid-dynamics post-processing pre-processing vascular

Last synced: 27 Aug 2026

https://github.com/aikubo/LinkingLines

Link and Cluster Cartesian Line Segments

Last synced: 27 Aug 2026

https://gitlab.com/libreumg/dataquier

Data quality assessments <https://doi.org/10.21105/joss.03093> guided by a data quality framework <https://doi.org/10.1186/s12874-021-01252-7> target the data quality dimensions integrity, completeness, consistency, and accuracy.

data quality

Last synced: 27 Aug 2026

https://github.com/lanl/spiner

Performance portable routines for generic, tabulated, multi-dimensional data

Last synced: 27 Aug 2026

https://github.com/OPM/pyopmspe11

A Python framework using OPM Flow for the SPE11 benchmark project

co2 csp11 flow opm spe11

Last synced: 27 Aug 2026

https://github.com/xillig/TTLocVis

TTLocVis: Twitter Topic Location Visualization

Last synced: 27 Aug 2026

https://gitlab.com/drti/basic-tools

Last synced: 27 Aug 2026

https://github.com/joglekara/VlaPy

1D-1V Vlasov-Poisson(-Fokker-Planck), Plasma Physics PDE Simulation Tool in NumPy and experiment management in MLFlow

numerical-methods plasma-physics python tests vlasov

Last synced: 27 Aug 2026

https://github.com/ropensci/stantargets

Reproducible Bayesian data analysis pipelines with targets and cmdstanr

bayesian high-performance-computing make r r-targetopia reproducibility rstats rstats-package stan statistics targets

Last synced: 27 Aug 2026

https://github.com/a-renzini/pygwb/

Last synced: 27 Aug 2026

https://github.com/cicirello/rho-mu

ρμ - a Java library of Randomization enHancements and Other Math Utilities

binomial cauchy gaussian pseudorandom random-numbers randomization randomizer

Last synced: 27 Aug 2026

https://github.com/polsartools/PolSARtools-QGIS

A QGIS plugin to generate polarimetric SAR descriptors.

polarimetric-decompositions polarimetric-sar-data qgis3-plugin radar-vegetation sar

Last synced: 27 Aug 2026

https://github.com/PyTomography/SlicerSPECTRecon

A 3D Slicer extension for SPECT reconstruction, built using PyTomography

3d-slicer-extension image-reconstruction

Last synced: 27 Aug 2026

https://github.com/livioivil/TextWiller

Collection of functions for text mining, specially devoted to the italian language

Last synced: 27 Aug 2026

https://github.com/madupite/madupite

a High-Performance Distributed Solver for Large-Scale Markov Decision Processes (MDP) relying on Inexact Policy Iteration; for Python and C++

cpp dynamic-programming ethz high-performance-computing markov-decision-processes mdp mdpsolver mpi nanobind optimal-control optimization petsc policy-iteration python python3 solver stochastic-optimal-control stochastic-optimization

Last synced: 27 Aug 2026

https://github.com/ICAMS/strucscan

A lightweight python-based framework for high-throughput material simulation

Last synced: 27 Aug 2026

https://github.com/kingyin3613/RingsPy

A Python automated geometric generation tool that generates 3D meshes of prismatic cellular solids with radial growth rules based on Voronoi diagrams.

Last synced: 27 Aug 2026

https://github.com/replicahealth/GluPredKit

GluPredKit aims to make blood glucose model training and prediction more accessible.

deep-learning glucose-prediction machine-learning modelling-biological-systems

Last synced: 27 Aug 2026

https://github.com/BirolLab/xmatchview

🗻 Visualization of genome/gene sequence synteny

Last synced: 27 Aug 2026

https://github.com/R-Computing-Lab/BGmisc/

Functions for extended pedigree analysis

behavior-genetics cran package r r-package

Last synced: 27 Aug 2026

https://github.com/kb-press/ndsplines/

Multi-dimensional B-splines

Last synced: 27 Aug 2026

https://github.com/AlphonsG/Rainbow-Optical-Flow-For-ALI

Automated air liquid interface cell culture analysis using deep optical flow.

bioinformatics biology deep-learning image-analysis optical-flow python pytorch

Last synced: 27 Aug 2026

https://github.com/mishioo/tesliper

Theoretical Spectroscopist's Little Helper

batch-processing chemical-computing chemistry gaussian optical-spectroscopy python spectral-simulations spectroscopy workflow-automation

Last synced: 27 Aug 2026

https://github.com/justinalsing/dlmmc

Dynamical linear modeling (DLM) regression code for analysis of atmospheric time-series data.

Last synced: 27 Aug 2026

https://github.com/tRIBS-Model/tRIBS

TIN-based Real-time Integrated Basin Simulator (tRIBS) Distributed Hydrological Model

hydrology hydrology-modeling hydrology-simulation

Last synced: 27 Aug 2026

https://github.com/sharmalab/eaglescope

Hierarchical and Cohort Visualization

Last synced: 27 Aug 2026

https://github.com/NicOudart/PyBWE

Python library for radar Bandwidth Extrapolation (BWE)

astronomy astrophysics bandwidth bwe extrapolation planetary-science pybwe radar resolution sounder

Last synced: 27 Aug 2026

https://github.com/pnnl/copper

Performance curve generator for building energy simulation

building energy hvac simulation

Last synced: 27 Aug 2026

https://github.com/vallenderlab/MicrobiomeR

A comprehensive and customizable R package for microbiome analysis.

alpha-diversity beta-diversity bioinformatics color-palette comprehensive metacoder metagenomics microbial-genomics microbiology microbiome microbiome-analysis pcoa permanova phyloseq r rstats visualization

Last synced: 27 Aug 2026

https://github.com/samwaseda/mamonca

Last synced: 27 Aug 2026

https://github.com/CMakePP/CMakePPLang/

Object-oriented extension to the CMake language.

cmake object-oriented-programming

Last synced: 27 Aug 2026

https://github.com/airexlab/fastvpinns

FastVPINNs - A tensor-driven acceleration of VPINNs for complex geometries

deep-learning inverse-problems neural-network partial-differential-equations physics-informed-neural-networks pinn scientific-machine-learning tensorflow2

Last synced: 27 Aug 2026

https://github.com/swiss-seismological-service/DUGseis

Software for acquisition and processing of micro-seismic data

Last synced: 27 Aug 2026

https://github.com/applicationskeleton/Skeleton

a tool to generate skeleton applications that mimic a real applications' parallel or distributed performance at a task level

Last synced: 27 Aug 2026

https://github.com/julia-wrobel/registr

Register exponential family curves

Last synced: 27 Aug 2026

https://github.com/hippylib/soupy

Stochastic Optimization under Uncertainty in Python.

Last synced: 27 Aug 2026

https://github.com/multiply-org/sar-pre-processing

This is the MULTIPLY repository containing the functionality for SAR pre processing.

Last synced: 27 Aug 2026

https://github.com/gyorilab/adeft

Tool for disambiguating acronyms and abbreviations in text for NLP applications

acronym-disambiguation

Last synced: 27 Aug 2026

https://github.com/MariaTsantaki/FASMA-synthesis

Python code for stellar spectral analysis

Last synced: 27 Aug 2026

https://github.com/NESCent/TraitDB

Trait Database using Rails 4

Last synced: 27 Aug 2026

https://github.com/edoddridge/aronnax

An idealised isopycnal model that can be run either with n+1/2 layers, or with n layers and variable bathymetry.

Last synced: 27 Aug 2026

https://gitlab.com/soleil-data-treatment/soleil-software-projects/qemu-web-desktop

DARTS/qemu-web-desktop: A web service that launches remote desktop virtual machines and displays them in your browser.

data analysis qemu remote-desktop virtualisation web service

Last synced: 28 Aug 2026

https://github.com/CyclotronResearchCentre/bidsme

Flexible bidsificator for multimodal datasets

bids brainvision dicom eeg mri-data nifti

Last synced: 27 Aug 2026

https://github.com/dessn/Pippin

Pipeline for photometric SN analysis

Last synced: 27 Aug 2026

https://github.com/jcorbino/mole

Mimetic Operators Library Enhanced

finite-differences mimetic numerical-methods pde vector-calculus

Last synced: 27 Aug 2026

https://github.com/SwathiSheshadri/pose3d

3D reconstruction toolbox for behavior tracked with multiple cameras

Last synced: 27 Aug 2026

https://github.com/souradipp76/MM-PoE

Multiple Choice Reasoning via. Process of Elimination using Multi-Modal Models

inference llm multi-modal question-answering

Last synced: 27 Aug 2026

https://github.com/AlexanderJuestel/pyheatdemand

Processing Tool for Heat Demand Data

geospatial-data geospatial-data-analysis heatmaps spatial-data spatial-data-analysis

Last synced: 27 Aug 2026

https://github.com/bc3LC/gcamreport

Package to process GCAM results and standardize the format

Last synced: 27 Aug 2026

https://github.com/oxinabox/DataDepsGenerators.jl/

Utility for developers to help define DataDeps registration blocks, for reusing existing Data with DataDeps.jl

data-management opendata openscience

Last synced: 27 Aug 2026

https://github.com/illinois-or-research-analytics/cm_pipeline

Pipeline that uses an improved version of CM for generating well-connected graph clusters

Last synced: 27 Aug 2026

https://github.com/PSims/BayesEoR

Code to estimate the power spectrum of redshifted 21-cm emission from interferometric observations, within a Bayesian forward modelling framework.

Last synced: 27 Aug 2026

https://github.com/EpistasisLab/regens

Recombines real genomic segments to simulate whole genomes

gwas-tools simulated-datasets

Last synced: 27 Aug 2026

https://github.com/msmbuilder/mdentropy/

Analyze correlated motions in MD trajectories with only a few lines of Python.

Last synced: 27 Aug 2026

https://github.com/twesterhout/lattice-symmetries

A package to simplify working with symmetry-adapted quantum many-body bases. Provides a good foundation for writing custom exact diagonalization and variational Monte Carlo software

bit-manipulation c cpp17 exact-diagonalization lattice-symmetries many-body-physics neural-network permutation quantum-mechanics symmetries symmetry-groups

Last synced: 27 Aug 2026

https://github.com/RECETOX/MSMetaEnhancer

Tool for mass spectra metadata annotation.

annotations hacktoberfest mass-spectrometry python usegalaxy

Last synced: 27 Aug 2026

https://github.com/Yu-Group/simChef

An R package to facilitate PCS simulation studies.

Last synced: 27 Aug 2026

https://github.com/QEC-pages/QDistRnd/

quantum-computing

Last synced: 27 Aug 2026

https://github.com/JonathanAMichaels/hebbRNN

A Reward-Modulated Hebbian Learning Rule for Recurrent Neural Networks

Last synced: 27 Aug 2026

https://github.com/villano-lab/nrCascadeSim

calculating the NR spectrum resulting from neutron-capture cascades.

Last synced: 27 Aug 2026

https://github.com/amkrajewski/nimCSO

nim Composition Space Optimization is a high-performance tool leveraging metaprogramming to implement several methods for selecting components (data dimensions) in compositional datasets, as to optimize the data availability and density for applications such as machine learning.

data-analysis data-optimization data-science materials-informatics metaprogramming nim nim-lang

Last synced: 27 Aug 2026

https://github.com/ropensci/PostcodesioR

API wrapper around postcodes.io - free UK postcode lookup and geocoder

api-wrapper geocoder geographic-data peer-reviewed postcode r r-package rstats uk

Last synced: 27 Aug 2026

https://github.com/intelligent-soft-robots/o80

synchronization of c++ processes via a custom python API

Last synced: 27 Aug 2026

https://github.com/cwentland0/perform

One-dimensional unsteady compressible reacting flow simulation framework, designed for simple prototyping and testing of novel reduced-order model methods.

reacting-flow-simulations reduced-order-modeling

Last synced: 27 Aug 2026