https://github.com/Collab4exaNBody/exaDEM
ExaDEM is a HPC software solution in the field of computational simulations. ExaDEM is built on top of exaNBody platform.
dem gpu granular-media hpc mpi
Last synced: 19 Jun 2026
https://github.com/RWTH-EBC/AixWeather
A weather data generation tool for building energy system simulations. Pull, Transform, Export.
converter dwd epw tmy3 try weather weatherdata weatherdatacollection
Last synced: 19 Jun 2026
https://github.com/tqsd/photon_weave
Photon Weave
jax optics quantum quantum-computing quantum-optics quantum-optics-simulation quantum-physics quantum-simulator
Last synced: 19 Jun 2026
https://github.com/IslasGECI/nerd
NERD: Numerical Estimation of Rodenticide Density
Last synced: 19 Jun 2026
https://github.com/JoshSchramm94/validateHOT
🎯 Validate your Holdout Task and other tools for preference measurement techniques
Last synced: 19 Jun 2026
https://github.com/sintefore/TimeStruct.jl
Flexible time structures for optimization modeling
Last synced: 19 Jun 2026
https://github.com/StevenGolovkine/FDApy
Python Package for Functional Data Analysis
Last synced: 19 Jun 2026
https://github.com/Cambridge-ICCS/FTorch
A library for directly calling PyTorch ML models from Fortran.
deep-learning fortran hacktoberfest interoperability libtorch machine-learning python pytorch torch
Last synced: 19 Jun 2026
https://github.com/CITCOM-project/CausalTestingFramework
A causal inference-driven framework for functional black-box testing of complex software.
causal-inference modelling verification
Last synced: 19 Jun 2026
https://github.com/nppackages/lpcde
R implementation of bandwidth selection, point estimation and inference procedures for local polynomial conditional distribution and density methods.
Last synced: 19 Jun 2026
https://github.com/weber1158/eds-classification
Algorithms for SEM-EDS mineral dust classification
matlab minerals sem-eds
Last synced: 19 Jun 2026
https://github.com/qiangyicheng/flory
Python package for finding coexisting phases in multicomponent mixtures.
Last synced: 19 Jun 2026
https://github.com/nvanalfen/halotools
Python package for studying large scale structure, cosmology, and galaxy evolution using N-body simulations and halo models
Last synced: 19 Jun 2026
https://github.com/mberto79/XCALibre.jl
aerodynamics cfd compressible-aerodynamics compressible-flows computational-fluid-dynamics computational-fluid-simulation gpu-acceleration incompressible-flow julia julia-language julia-package large-eddy-simulation rans
Last synced: 19 Jun 2026
https://github.com/tscnlab/LightLogR
R package for processing and analysing light logger and optical radiation dosimeter data
dosimetry light rstats-package time-series-analysis wearable-devices wearable-sensors
Last synced: 19 Jun 2026
https://github.com/TeaspoonTDA/teaspoon
Topological Signal Processing in Python
persistent-homology persistent-homology-graphs python signal-processing tda tda-python topological-data-analysis topological-signal-processing
Last synced: 19 Jun 2026
https://github.com/samuelmurail/af_analysis
Analysis of alphafold and colabfold results
Last synced: 19 Jun 2026
https://github.com/unfoldtoolbox/UnfoldSim.jl
Simulate EEG / ERP data with overlap, non-linear effects, multiple regression
eeg erp julia simulation time-series
Last synced: 19 Jun 2026
https://github.com/Juke34/AliNe
Nextflow Alignment Pipeline - from fastq.gz to sorted bam/cram with ease
bbmap bowtie bowtie2 bwa bwamem2 dragmap graphmap2 hisat2 kallisto last minimap2 nextflow ngmlr novoalign nucmer salmon star starlong sublong subread
Last synced: 19 Jun 2026
https://github.com/JuliaHealth/NeuroAnalyzer.jl
Julia toolbox for analyzing neurophysiological data
brain ecog eeg ieeg julia meg neuroscience nirs psychology seeg tacs tdcs tms trns
Last synced: 19 Jun 2026
https://github.com/qurit/rt-utils
A minimal Python library to facilitate the creation and manipulation of DICOM RTStructs.
ai binary-masks dicom mask medical-image-processing medical-imaging nuclear-medicine pydicom roi rt-structs rt-utils rtstruct typed
Last synced: 19 Jun 2026
https://github.com/gouverneurp/eVAS/
electronic Visual Analogue Scale (eVAS) is an open source, easy to use and user-friendly slider that records the values and saves them to CSV files.
Last synced: 19 Jun 2026
https://github.com/AutoResearch/sweetbean
A declarative programming language built in Python, designed for the synthesis of behavioral experiments
automated-documentation behavioral-experiments online-behavioral-experiments synthetic-participants
Last synced: 19 Jun 2026
https://github.com/PRIDE-Archive/pridepy
Python client for PRIDE Archive Rest API.
mass-spectrometry pride pride-database proteomics python python-client
Last synced: 19 Jun 2026
https://github.com/alan-turing-institute/autoemulate
Emulate simulations easily
active-learning aiphys calibration emulation ensemble gaussian-processes history-matching hut23 hut23-1468 mcmc neural-networks pytorch sensitivity-analysis uncertainty-quantification
Last synced: 19 Jun 2026
https://github.com/rahil-makadia/grss
Gauss-Radau Small-body Simulator
asteroids astronomy comets orbit-determination orbit-propagation
Last synced: 19 Jun 2026
https://github.com/henrikmelin/h3ppy
A python package for modelling and fitting H3+ spectra
astronomy data-analysis planetary-science python3 spectroscopy
Last synced: 19 Jun 2026
https://github.com/GalacticDynamics/unxt
Unitful Quantities in JAX
array auto-differentiation dimensions high-performance jax quantities scientific-computing units
Last synced: 19 Jun 2026
https://github.com/mesa/mesa
Mesa is an open-source Python library for agent-based modeling, ideal for simulating complex systems and exploring emergent behaviors.
agent-based-modeling agent-based-simulation complex-systems complexity-analysis gis mesa modeling-agents simulation simulation-environment simulation-framework spatial-models
Last synced: 19 Jun 2026
https://github.com/BerkeleyLab/caffeine
A parallel runtime library for Fortran compilers
coarray coarray-fortran fortran-2018 fortran-2023 parallel-computing parallel-programming parallelism partitioned-global-address-space pgas runtime-library
Last synced: 19 Jun 2026
https://github.com/sxs-collaboration/gwsurrogate
An easy to use interface to gravitational wave surrogate models
gravitational-waveforms python surrogate-models
Last synced: 19 Jun 2026
https://github.com/Jashcraf/katsu
Polarimetric Data Reduction and machine control for measuring the polarization of observatories
Last synced: 19 Jun 2026
https://github.com/evanhockings/QuantumACES.jl
Design scalable noise characterisation experiments for quantum computers
julia quantum quantum-computing quantum-error-correction
Last synced: 19 Jun 2026
https://github.com/pyiron/executorlib
Up-scale python functions for high-performance computing (HPC)
flux hpc mpi mpi4py multiprocessing pyiron slurm
Last synced: 19 Jun 2026
https://github.com/usnistgov/imppy3d
Image processing in python for 3d image stacks
Last synced: 19 Jun 2026
https://github.com/madupite/madupite
a High-Performance Distributed Solver for Large-Scale Markov Decision Processes (MDP) relying on Inexact Policy Iteration; for Python and C++
cpp dynamic-programming ethz high-performance-computing markov-decision-processes mdp mdpsolver mpi nanobind optimal-control optimization petsc policy-iteration python python3 solver stochastic-optimal-control stochastic-optimization
Last synced: 19 Jun 2026
https://github.com/solids4foam/solids4foam
The official repository for solids4foam
finite-volume-method fluid-solid-interaction openfoam petsc solid-mechanics
Last synced: 19 Jun 2026
https://github.com/AncientNLP/potnia
Potnia is an open-source Python library designed to convert Romanized transliterations of ancient texts into Unicode representations of their respective native scripts.
Last synced: 19 Jun 2026
https://github.com/probml/dynamax
A Python package for probabilistic state space modeling with JAX
hidden-markov-models jax kalman-filter python state-space-models
Last synced: 19 Jun 2026
https://github.com/ISISNeutronMuon/quickBayes
A Python package for Bayesian analysis of data.
bayes python
Last synced: 19 Jun 2026
https://github.com/berenslab/fundus_image_toolbox
A Python package for fundus image processing.
Last synced: 19 Jun 2026
https://github.com/tvh0021/aweSOM
Accelerated Self-organizing Map (SOM) and Statistically Combined Ensemble (SCE)
Last synced: 19 Jun 2026
https://github.com/everval/LongMemory.jl
Julia package to generate, estimate, and forecast long memory processes
arfima cross-sectional-aggregation forecasting fractional-differencing har-model long-memory long-range-dependence stochastic-duration-shock strong-persistence time-series time-series-analysis
Last synced: 19 Jun 2026
https://github.com/silkemaes/MACE
MACE, a Machine-learning Approach to Chemistry Emulation
astrochemistry astrophysics autoencoder machine-learning simulation
Last synced: 19 Jun 2026
https://github.com/srigas/jaxkan
Kolmogorov–Arnold Networks built on JAX
flax jax kans kolmogorov-arnold-networks pikan
Last synced: 19 Jun 2026
https://github.com/munich-quantum-toolkit/core
MQT Core - The Backbone of the Munich Quantum Toolkit
mqt quantum-computing quantum-intermediate-representation tum
Last synced: 19 Jun 2026
https://github.com/CastillonMiguel/phasefieldx
An Open-Source Framework for Advanced Phase-Field Simulations
fatigue fem finite-elements fracture fracture-mechanics phase-field phase-field-fracture solidification
Last synced: 19 Jun 2026
https://github.com/kinleyid/tempodisco/
An R package for temporal discounting
Last synced: 19 Jun 2026
https://github.com/sbi-dev/sbi
sbi is a Python package for simulation-based inference, designed to meet the needs of both researchers and practitioners. Whether you need fine-grained control or an easy-to-use interface, sbi has you covered.
bayesian-inference likelihood-free-inference machine-learning parameter-estimation pytorch simulation-based-inference
Last synced: 19 Jun 2026
https://github.com/wustat/rjaf
Regularized Joint Assignment Forest with Treatment Arm Clustering
causal-inference machine-learning
Last synced: 19 Jun 2026
https://github.com/daniloceano/CycloPhaser
This package calculates extratropical cyclone life cycle phases from vorticity data using Python.
Last synced: 19 Jun 2026
https://github.com/idaholab/MontePy
MontePy is the most user friendly Python library (API) to read, edit, and write MCNP input files.
api hacktoberfest mcnp mcnp6 monte-carlo neutronics radiation-transport
Last synced: 19 Jun 2026
https://github.com/souradipp76/MM-PoE
Multiple Choice Reasoning via. Process of Elimination using Multi-Modal Models
inference llm multi-modal question-answering
Last synced: 19 Jun 2026
https://github.com/research-software-directory/RSD-as-a-service
This repo contains the new RSD-as-a-service implementation
Last synced: 19 Jun 2026
https://github.com/Bioconductor/bioconductor.org
Source code for the Bioconductor website
bioconductor website
Last synced: 19 Jun 2026
https://github.com/evanderkoogh/otel-cf-workers
An OpenTelemetry compatible library for instrumenting and exporting traces for Cloudflare Workers
cloudflare observability otel workers
Last synced: 19 Jun 2026
https://github.com/stan-dev/stan
Stan development repository. The master branch contains the current release. The develop branch contains the latest stable development. See the Developer Process Wiki for details.
bayesian bayesian-data-analysis bayesian-inference bayesian-methods bayesian-statistics stan
Last synced: 19 Jun 2026
https://github.com/gnu-octave/octave
GNU Octave Mirror (https://www.octave.org/hg/octave). Report bugs and submit pull requests (patches) at https://bugs.octave.org
Last synced: 19 Jun 2026
https://github.com/JuliaLang/julia
The Julia Programming Language
hacktoberfest hpc julia julia-language julialang machine-learning numerical programming-language science scientific
Last synced: 19 Jun 2026
https://github.com/rstudio/rstudio
RStudio is an integrated development environment (IDE) for R
Last synced: 19 Jun 2026
https://github.com/wch/r-source
Read-only mirror of R source code from https://svn.r-project.org/R/, updated hourly. See the build instructions on the wiki page.
Last synced: 19 Jun 2026
https://github.com/sid-the-sloth1/libraries
Set of custom made libs. Developed by keeping Tampermonkey in mind, but can be modified to use in normal web context also.
Last synced: 19 Jun 2026
https://github.com/Qiskit/qiskit
Qiskit is an open-source SDK for working with quantum computers at the level of extended quantum circuits, operators, and primitives.
python qiskit quantum quantum-circuit quantum-computing quantum-programming-language sdk
Last synced: 20 Jun 2026
https://github.com/ESCOMP/CESM
The Community Earth System Model
climate climate-model ncar
Last synced: 20 Jun 2026
https://github.com/trinityrnaseq/trinityrnaseq
Trinity RNA-Seq de novo transcriptome assembly
Last synced: 20 Jun 2026
https://github.com/snakemake/snakemake
This is the development home of the workflow management system Snakemake. For general information, see
reproducibility snakemake workflow-management
Last synced: 20 Jun 2026
https://github.com/nextflow-io/nextflow
A DSL for data-driven computational pipelines
aws bioinformatics cloud dataflow docker groovy hello hpc nextflow pipeline pipeline-framework reproducible-research reproducible-science sge singularity singularity-containers slurm workflow-engine
Last synced: 20 Jun 2026
https://github.com/biolab/orange3
🍊 :bar_chart: :bulb: Orange: Interactive data analysis
classification clustering data-mining data-science data-visualization decision-trees machine-learning numpy orange orange3 pandas plotting python random-forest regression scikit-learn scipy visual-programming visualization
Last synced: 20 Jun 2026
https://github.com/knime/knime-core
KNIME Analytics Platform
database integration machine-learning open-source tool-blending workflow
Last synced: 20 Jun 2026
https://github.com/GenericMappingTools/gmt
The Generic Mapping Tools
c earth-science generic-mapping-tools geophysics geospatial mapping
Last synced: 20 Jun 2026
https://github.com/neuronsimulator/nrn
NEURON Simulator
high-performance-computing neuron neuroscience simulation
Last synced: 20 Jun 2026
https://github.com/afni/afni
Official AFNI source and documentation
anatomical-mri dwi fmri fmri-analysis fmri-data-analysis mri quality-control statistical-inference statistics visualization
Last synced: 20 Jun 2026
https://github.com/Slicer/Slicer
Multi-platform, free open source software for visualization and image computing.
3d-printing 3d-slicer c-plus-plus computed-tomography image-guided-therapy image-processing itk kitware medical-image-computing medical-imaging national-institutes-of-health neuroimaging nih python qt registration segmentation tcia-dac tractography vtk
Last synced: 20 Jun 2026
https://github.com/InsightSoftwareConsortium/ITK
Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.
cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing
Last synced: 20 Jun 2026
https://gitlab.kitware.com/paraview/paraview
Parallel Data Analysis and Visualization Application based on VTK.
paraview
Last synced: 20 Jun 2026
https://github.com/visit-dav/visit
VisIt - Visualization and Data Analysis for Mesh-based Scientific Data
data-analysis data-viz hpc python radiuss scientific-computing scientific-visualization visualization
Last synced: 20 Jun 2026
https://github.com/open-mpi/ompi
Open MPI main development repository
c fortran hacktoberfest hpc mpi openmpi
Last synced: 20 Jun 2026
https://github.com/lammps/lammps
Public development project of the LAMMPS MD software package
kokkos lammps molecular-dynamics simulation
Last synced: 20 Jun 2026
https://gitlab.com/gromacs/gromacs
The GROMACS molecular simulation toolkit.
molecular dynamics simulation
Last synced: 20 Jun 2026
https://github.com/imagej/ImageJ
Public domain software for processing and analyzing scientific images
computer-vision image-processing
Last synced: 20 Jun 2026
https://github.com/rachis-org/rachis
Rachis Framework (Formerly Known as QIIME 2 Framework (Q2F))
hacktoberfest
Last synced: 20 Jun 2026
https://github.com/BenLangmead/bowtie
An ultrafast memory-efficient short read aligner
bioinformatics c-plus-plus genomics read-aligners
Last synced: 20 Jun 2026
https://github.com/samtools/samtools
Tools (written in C using htslib) for manipulating next-generation sequencing data
Last synced: 20 Jun 2026
https://github.com/broadinstitute/gatk
Official code repository for GATK versions 4 and up
bioinformatics dna gatk genome genomics ngs science sequencing spark
Last synced: 20 Jun 2026
https://github.com/cytoscape/cytoscape
Cytoscape: an open source platform for network analysis and visualization
Last synced: 20 Jun 2026
https://github.com/cantaloupe-project/cantaloupe
High-performance dynamic image server in Java
iiif image-server jpeg2000 thumbnails zoomable-images
Last synced: 20 Jun 2026
https://github.com/libexif/libexif/
A library for parsing, editing, and saving EXIF data
exif jpeg metadata photos
Last synced: 19 Jun 2026
https://github.com/guidewire-oss/fern-reporter
A ginkgo test reporter extension for storing test run information and also for reporting html pages
bdd fern ginkgo ginkgo-reporter golang hacktoberfest html-reporter reporter test-visualization testing testing-reporter testing-tool testing-tools
Last synced: 19 Jun 2026
https://github.com/leanprover/lean4
Lean 4 programming language and theorem prover
lean lean4
Last synced: 19 Jun 2026
