https://github.com/CEA-MetroCarac/pystack3d
Package to process images stacks (typically from 3D FIB-SEM)
Last synced: 20 Jun 2026
https://github.com/davidpagnon/Sports2D
Compute 2D human pose and angles from a video or a webcam.
biomechanics blazepose joint-angles kinematics kinovea markerless openpose pose-estimation rtmpose sports-analytics
Last synced: 20 Jun 2026
https://github.com/mlysy/LocalCop
Local Likelihood Inference for Conditional Copulas
Last synced: 20 Jun 2026
https://github.com/daniloceano/LorenzCycleToolkit
Program for computing the Lorenz Energy Cycle (LEC) in a closed region of the atmosphere.
atmospheric-science data-analysis-python energetics meteorology scientific-research
Last synced: 20 Jun 2026
https://github.com/alchemistry/alchemlyb
the simple alchemistry library
free-energy library molecular-dynamics python science
Last synced: 20 Jun 2026
https://forge.inrae.fr/pherosensor/pherosensor-toolbox
Toolbox for the inverse problem solution to identify sources of pheromone emission.
Last synced: 20 Jun 2026
https://github.com/choosehappy/HoverFast
Blazing fast nuclei segmentation for brightfield Whole Slide Images
Last synced: 20 Jun 2026
https://gitlab.com/qc-devs/aqcnes
Mirror of https://gitlab.ethz.ch/mechanics-and-materials/aqcnes/
Last synced: 20 Jun 2026
https://github.com/replicahealth/GluPredKit
GluPredKit aims to make blood glucose model training and prediction more accessible.
deep-learning glucose-prediction machine-learning modelling-biological-systems
Last synced: 20 Jun 2026
https://github.com/maps-as-data/MapReader
A computer vision pipeline for exploring and analyzing images at scale
article computer-vision deep-learning digital-humanities hut23 hut23-96 machine-learning maps pytorch spatial-data
Last synced: 20 Jun 2026
https://github.com/JuliaGeometry/DelaunayTriangulation.jl
DelaunayTriangulation.jl: A Julia package for Delaunay triangulations and Voronoi tessellations in the plane
computational-geometry delaunay delaunay-triangulation geometry meshing power-diagram tessellation triangulation voronoi voronoi-diagram
Last synced: 20 Jun 2026
https://github.com/ekiefl/pooltool
A sandbox billiards game that emphasizes realistic physics
billiards eight-ball panda3d physics pool python simulation snooker
Last synced: 20 Jun 2026
https://github.com/ctkelley/MultiPrecisionArrays.jl
Mulitprecision Arrays
iterative-methods iterative-refinement linear-solvers multiprecision
Last synced: 20 Jun 2026
https://github.com/nathanaelbosch/ProbNumDiffEq.jl
Probabilistic Numerical Differential Equation solvers via Bayesian filtering and smoothing
differential-equations julia ode ode-solver probabilistic-models probabilistic-numerics
Last synced: 20 Jun 2026
https://github.com/ruiying-ocean/cgeniepy
A Python package for analysing the cGENIE model output
cgenie earth-sciences earth-system-model oceanography python visualisation
Last synced: 20 Jun 2026
https://github.com/furrer-lab/abn
Bayesian network analysis in R
bayesian-network binomial categorical-data gaussian grouped-datasets mixed-effects multinomial multivariate poisson structure-learning
Last synced: 20 Jun 2026
https://github.com/RoryChenXY/DataRepExp_public
A shiny app that was developed to improve the FAIR of research data hosted on data repository.
Last synced: 20 Jun 2026
https://github.com/aneeshnaik/lintsampler
Efficient random sampling via linear interpolation.
low-discrepancy-sequence numpy python random-generation random-sampling statistics
Last synced: 20 Jun 2026
https://github.com/OFFIS-DAI/Mango.jl
Modular Julia-based agent framework to implement multi-agent systems
agent agent-based agent-based-control agent-based-simulation distributed-computing multi-agent-systems
Last synced: 20 Jun 2026
https://github.com/neurogeriatricskiel/KielMAT
Python based toolbox for processing motion data
Last synced: 20 Jun 2026
https://github.com/gridap/GridapSolvers.jl
Solvers and preconditioners for the Gridap ecosystem.
Last synced: 20 Jun 2026
https://github.com/MartianColonist/Cthulhu
A Python package to calculate cross sections for substellar atmospheres
Last synced: 20 Jun 2026
https://github.com/genotoul-bioinfo/Binette
A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.
bioinformatics-tool metagenomics metagenomics-binning microbiology
Last synced: 20 Jun 2026
https://github.com/willyfh/visualtorch
VisualTorch aims to help visualize Torch-based neural network architectures.
architecture-diagram architecture-visualization artificial-intelligence deep-learning machine-learning neural-network pytorch torch visualization visualtorch
Last synced: 20 Jun 2026
https://github.com/nglm/pycvi
Internal Cluster Validity Indices in python, compatible with time-series data
ai cluster-validity-index clustering cvi machine-learning python scikit-learn sklearn time-series
Last synced: 20 Jun 2026
https://github.com/MillionConcepts/pdr
[P]lanetary [D]ata [R]eader - A single function to read all Planetary Data System (PDS) data into Python
Last synced: 20 Jun 2026
https://github.com/jabirali/bodge/
Numerical library for working with clean superconductors in Python using the Bogoliubov-de Gennes formalism
bdg hamiltonian numerical-methods python python3 sparse-matrix superconductivity tight-binding
Last synced: 20 Jun 2026
https://github.com/FraunhoferIWES/iwopy
Fraunhofer IWES optimization tools in Python
Last synced: 20 Jun 2026
https://github.com/ckdckd145/statmanager-kr
Open-source statistical package in Python based on Pandas
clinical-trials correlation-analysis easy-to-use null-hypothesis pandas pandas-python posthoc-comparisons research social-science statistical-analysis statistical-methods statistical-tests statistics ttest user-friendly visualize-differences visualizes-data
Last synced: 20 Jun 2026
https://github.com/JuliaAstro/EphemerisSources.jl
Access HORIZONS and SPICE ephemeris sources with idiomatic Julia.
astrodynamics astronomy ephemerides ephemeris
Last synced: 20 Jun 2026
https://github.com/IDEMSInternational/carbonr
Calculating carbon emissions in R
Last synced: 20 Jun 2026
https://github.com/GEOS-DEV/GEOS
GEOS Simulation Framework
carbon-storage geomechanics gpu hpc llnl reservoir-simulation
Last synced: 20 Jun 2026
https://github.com/cproctor/qualitative-coding
Qualitative coding for computer scientists
Last synced: 20 Jun 2026
https://github.com/mprib/caliscope
Multicamera Calibration for Motion Capture Workflows
bundle-adjustment camera-calibration extrinsic-calibration intrinsic-calibration motion-capture-mocap motion-capture-processing open-source
Last synced: 20 Jun 2026
https://github.com/duxfrederic/lightcurver
A pipeline for precise extraction of light curves through forward modelling of a region from time-series wide-field astronomical images
astronomy observational-cosmology photometry photometry-pipeline
Last synced: 20 Jun 2026
https://gitlab.com/free-astro/siril
The Siril image processing software for amateur astronomy
astronomy image processing software linux osx preprocessing windows
Last synced: 20 Jun 2026
https://github.com/cau-se/ARCHES-PiCar-X
Software for digital twin research
Last synced: 20 Jun 2026
https://github.com/finsberg/gotranx
Next generation ODE translator
code-generation gotran ode parser parsing
Last synced: 20 Jun 2026
https://github.com/mendezVKI/MODULO
MODULO (MODal mULtiscale pOd) is a software developed at the von Karman Institute to perform Multiscale Modal Analysis of numerical and experimental data using the mPOD.
Last synced: 20 Jun 2026
https://github.com/adamantine-sim/adamantine
Software to simulate heat transfer for additive manufacturing
3d-printing heat-transfer simulation
Last synced: 20 Jun 2026
https://github.com/lxvm/AutoBZ.jl
Automatic and adaptive BZ integration for electronic properties
Last synced: 20 Jun 2026
https://github.com/BattModels/asimtools
Optimized workflow management and script handling for atomistic simulations
Last synced: 20 Jun 2026
https://github.com/USEPA/harmonize-wq
Standardize, clean, and wrangle Water Quality Portal data into more analytic-ready formats
ord research
Last synced: 20 Jun 2026
https://github.com/gaelforget/MITgcm.jl
Julia interface to MITgcm
adjoint adjoint-sensitivities biogeochemistry climate climate-model climate-science ecology model ocean ocean-modelling ocean-sciences particles seaice tracers transport
Last synced: 20 Jun 2026
https://github.com/marccanby/linguiphyr/
Linguistic Phylogenetic Analysis in R
Last synced: 20 Jun 2026
https://github.com/athob/py-ananke
Python pipeline to generate mock astrometric and photometric catalogs of synthetic stars derived from particle-based simulated star populations
Last synced: 20 Jun 2026
https://github.com/trchudley/pdemtools
Conveniently search, download, and process ArcticDEM and REMA products
arcticdem coregistration dem digital-elevation-model geospatial glaciers glaciology polar-geospatial-center python rema terrain-analysis
Last synced: 20 Jun 2026
https://github.com/manzt/anywidget
reusable widgets made easy
jupyter marimo python widgets
Last synced: 20 Jun 2026
https://github.com/Parcels-code/plasticparcels
Repository for PlasticParcels tool
Last synced: 20 Jun 2026
https://github.com/tinawunderlich/MultichannelGPR
A collection of MATLAB scripts for proccesing and visualization of (Multichannel) GPR data
Last synced: 20 Jun 2026
https://github.com/NOSALRO/robot_dart
RobotDART: a versatile robot simulator for robotics and machine learning researchers
dart eigen3 magnum
Last synced: 20 Jun 2026
https://github.com/METHODS-Group/DRDMannTurb
Data-driven synthetic turbulence generation based on the Mann model
Last synced: 20 Jun 2026
https://github.com/stegmaja/TSE
Triple stellar evolution code
astrophysics black-holes dynamics gravitational-waves lidov-kozai stellar-evolution three-body-problem three-body-simulation
Last synced: 20 Jun 2026
https://github.com/WilliamLwj/PyXAB
PyXAB - A Python Library for X-Armed Bandit and Online Blackbox Optimization Algorithms
algorithm automl bandit-algorithms blackbox-optimization continuous-armed-bandit data-science hyperparameter-optimization hyperparameter-tuning lipschitz-bandit machine-learning machine-learning-algorithms online-learning optimization optimization-algorithms reinforcement-learning x-armed-bandit
Last synced: 20 Jun 2026
https://github.com/stingraysoftware/stingray
Anything can happen in the next half hour (including spectral timing made easy)!
astronomy astrophysics blackhole blackholes data-analysis fourier-analysis fourier-transform hacktoberfest neutronstars pulsars time-series time-series-analysis timeseries x-ray x-ray-binaries
Last synced: 20 Jun 2026
https://github.com/retostauffer/python-colorspace
Python colorspace implementation. Documentation available on https://retostauffer.github.io/python-colorspace/. The latest release is available via the Python Package Index (PyPI) via https://pypi.org/project/colorspace/
Last synced: 20 Jun 2026
https://github.com/uw-comphys/openccm
OpenCCM is a CFD-based compartment modelling software package. It is primarily intended for convection dominated reactive flows which feature a weak or one-way coupling between the reactive species and the carrier fluid, i.e. the reaction does not substantially influence the fluid flow over the course of the simulation.
Last synced: 20 Jun 2026
https://github.com/dominic-chang/Krang.jl
Fast analytic raytracing around Kerr black holes
automatic-differentiation black-hole general-relativity gpu-acceleration julia kerr raytracer raytracing
Last synced: 20 Jun 2026
https://github.com/brocklab/pycashier
cash in on DNA barcode tags
bioinformatics pipeline
Last synced: 20 Jun 2026
https://github.com/FaaSr/FaaSr-package-v1
Function-as-a-Service package for R
Last synced: 20 Jun 2026
https://github.com/tvwenger/bayes_spec
A Bayesian Spectral Line Modeling Framework
Last synced: 20 Jun 2026
https://github.com/JuliaGeodynamics/GeophysicalModelGenerator.jl
Import, process and interpret geophysical data sets to be used in numerical models.
Last synced: 20 Jun 2026
https://github.com/konkolyseismolab/seismolab
Open-source python framework for downloading, analyzing, and visualizing data of variable stars from space-based surveys.
Last synced: 20 Jun 2026
https://github.com/lanl/singularity-eos
Performance portable equations of state and mixed cell closures
Last synced: 20 Jun 2026
https://github.com/ShaunFell/GRBoondi
An AMR-based open source code to evolve generalized Proca fields on arbitrary fixed backgrounds
general-relativity numerical-relativity
Last synced: 20 Jun 2026
https://github.com/meixichen/SpatialGEV
An efficient computational method for fitting spatial extreme value models
Last synced: 20 Jun 2026
https://github.com/brainets/hoi
Higher-Order Interactions
higher-order-interactions hoi jax network python
Last synced: 20 Jun 2026
https://github.com/alan-turing-institute/setvis
A tool for visualising set membership and patterns of missingness in data
bokeh hut23 hut23-845 jupyter-notebook missing-data python set-visualization
Last synced: 20 Jun 2026
https://github.com/kellino/DiscreteEntropy.jl
Estimation of Shannon Entropy for Discrete Random Variables
Last synced: 20 Jun 2026
https://github.com/hugoledoux/startinpy
A Python library for modelling and processing 2.5D terrains using a (2D) Delaunay triangulation.
delaunay-triangulation gis interpolation terrain tin
Last synced: 20 Jun 2026
https://github.com/WaterFutures/EPyT-Flow
A Python package designed for the easy generation of hydraulic and water quality scenario data of water distribution networks.
epanet epanet-python-toolkit hydraulics python simulation water water-distribution-networks
Last synced: 20 Jun 2026
https://github.com/timothyas/xesn
Large scale Echo State Networks powered by xarray and dask.
Last synced: 20 Jun 2026
https://github.com/BirkhoffG/jax-relax/
Recourse Explanation Library in JAX
Last synced: 20 Jun 2026
https://github.com/ldliao/jointVIP
Prioritize variables in observational study design through the joint variable importance plot; shiny app: https://ldliao.shinyapps.io/jointVIP/
causal-inference observational-study r rstats study-design
Last synced: 20 Jun 2026
https://github.com/isce-framework/dolphin
InSAR phase linking library for creating surface displacement maps using persistent scatterer (PS) and distributed scatterer (DS) processing
deformation geoscience geospatial-processing insar phase-linking remote-sensing squeesar time-series
Last synced: 20 Jun 2026
https://github.com/ptaconet/modisfast
Fast and efficient access to MODIS, VIIRS and GPM Earth Observation data with R
data-cube earth-science-data environmental-data gpm land modis nasa opendap precipitation-data r temperature-data vegetation-data viirs
Last synced: 20 Jun 2026
https://github.com/DavidLapous/multipers
Python library for multiparameter persistence
cpp cython icml-2024 multiparameter-persistence neurips-2023 persistent-homology python tda topological-data-analysis
Last synced: 20 Jun 2026
https://github.com/amkrajewski/nimCSO
nim Composition Space Optimization is a high-performance tool leveraging metaprogramming to implement several methods for selecting components (data dimensions) in compositional datasets, as to optimize the data availability and density for applications such as machine learning.
data-analysis data-optimization data-science materials-informatics metaprogramming nim nim-lang
Last synced: 20 Jun 2026
https://github.com/baiyueh/PANINIpy
[MOVED] → github.com/HKU-Complex-Networks-Lab/PANINIpy
archived moved
Last synced: 20 Jun 2026
https://github.com/sumn2u/annotate-lab
Annotate-lab is an open-source image annotation tool for efficient dataset creation. With an intuitive interface and flexible export options, it streamlines your machine learning workflow. 🖼️✏️📑
annotation-tool classification collaborate computer-vision image-annotation image-labeling image-masking image-segmentation machine-learning python react segmentation
Last synced: 20 Jun 2026
https://forge.inrae.fr/migale/easy16s
Server : https://shiny.migale.inrae.fr/app/easy16S | Doc : https://easy16s.migale.inrae.fr/
Last synced: 20 Jun 2026
https://github.com/sharmalab/eaglescope
Hierarchical and Cohort Visualization
Last synced: 20 Jun 2026
https://github.com/bobleesj/cifkit
High-throughput .cif analysis made easy. DOI: https://doi.org/10.21105/joss.07205
coordination-environment crystallography high-throughput site-analysis solid-state
Last synced: 20 Jun 2026
https://github.com/Bios4Biol/intronSeeker
IntronSeeker identifies potentially retained introns in de novo RNA-seq assembly in order to quantify and remove them.
Last synced: 20 Jun 2026
https://github.com/LandSciTech/ccviR
Implement NatureServe climate change vulnerability index in R
Last synced: 20 Jun 2026
https://github.com/PSims/BayesEoR
Code to estimate the power spectrum of redshifted 21-cm emission from interferometric observations, within a Bayesian forward modelling framework.
Last synced: 20 Jun 2026
https://github.com/Qile0317/APackOfTheClones
Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of clonal expansion at a single cell resolution, by representing expanded clones as differently sized circles.
clonal-analysis immune-repertoire immune-system r scrna-seq scrnaseq seurat single-cell single-cell-genomics
Last synced: 20 Jun 2026
https://github.com/LDEO-CREW/Pythonic-DISORT
Discrete Ordinates Solver for the (1D) Radiative Transfer Equation in a single or multi-layer plane-parallel atmosphere. Coded entirely in Python 3. Based on Stamnes' FORTRAN DISORT (see references in the Jupyter Notebook) and has its main features.
atmospheric-modelling discrete-ordinates-method disort python radiative-transfer radiative-transfer-models
Last synced: 20 Jun 2026
https://github.com/polca/pathways
Scenario-wide Life Cycle Assessment
energy lca prospective scenario
Last synced: 20 Jun 2026
https://github.com/IPESE/REHO
Decision Support Tool for Renewable Energy Communities
Last synced: 20 Jun 2026
