Ecosyste.ms: Summary

https://github.com/dms-viz/dms-viz.github.io

Interactive tool for visualizing site-level data on a protein structure

Last synced: 20 Jun 2026

https://github.com/amberbiology/scribl

Semantic Capture of Relationships In Biological Literature (scribl)

computational-biology literature-mining network-biology systems-biology

Last synced: 20 Jun 2026

https://github.com/hydroframe/subsettools

Subsetting tools and utilities for ParFlow hydrological modeling

Last synced: 20 Jun 2026

https://github.com/m-d-grunnill/MetaCast

A package for broadcasting epidimiological and ecological models over metapopulations.

Last synced: 20 Jun 2026

https://github.com/b-pardi/pyQCM

Python based computational for for analyzing quartz crystal microbalance with dissipation (QCM-D) experimental data

Last synced: 20 Jun 2026

https://github.com/jcorbino/mole

Mimetic Operators Library Enhanced

finite-differences mimetic numerical-methods pde vector-calculus

Last synced: 20 Jun 2026

https://github.com/oncoray/mirp

Medical Image Radiomics Processor

image-processing radiomics

Last synced: 20 Jun 2026

https://gitlab.com/open-darts/open-darts

The DARTS framework is designed for forward and inverse modeling in geo-energy applications.

energy transition geothermal energy production modeling of CO2 sequestration

Last synced: 20 Jun 2026

https://github.com/EhsanGharibNezhad/TelescopeML

Deep Convolutional Neural Networks and Machine Learning Models for Analyzing Stellar and Exoplanetary Telescope Spectra

astronomy atmospheric-modelling convolutional-neural-networks machine-learning star telescope

Last synced: 20 Jun 2026

https://github.com/AStcherbinine/omegapy

Python tools for OMEGA/MEx observation data (importation/correction/display).

astronomy physics planetary-science python3

Last synced: 20 Jun 2026

https://github.com/votca/votca

The source of the votca-csg and xtp packages

charge-transport coarse-grained-molecular-dynamics coarse-graining excited-states gromacs gw-bse molecular-dynamics multiscale-simulation votca

Last synced: 20 Jun 2026

https://github.com/Quantum-Optics-LKB/NLSE

Non linear Schrödinger equation solver

simulation

Last synced: 20 Jun 2026

https://github.com/CM2S/piglot

A package for the optimisation of numerical responses

bayesian-optimization optimisation parameter-identification physics-solvers python

Last synced: 20 Jun 2026

https://github.com/Cloud-Drift/clouddrift

CloudDrift accelerates the use of Lagrangian data for atmospheric, oceanic, and climate sciences.

climate-data climate-science data-structures oceanography python

Last synced: 20 Jun 2026

https://github.com/Sm00thix/IKPLS

Fast CPU and GPU Python implementations of Improved Kernel Partial Least Squares (PLS) by Dayal and MacGregor (1997) and Fast Partition-Based Cross-Validation With Centering and Scaling for XTX and XTY by Engstrøm and Jensen (2025). This package also includes options to use sample weights for PLS modeling.

algorithm data-science gpu-support linear-regression partial-least-squares partial-least-squares-regression pls plsda plsr tpu-acceleration weighted-least-squares weighted-linear-regression weighted-regression

Last synced: 20 Jun 2026

https://github.com/mnets/pymnet

The original library for analyzing multilayer networks.

multilayer-networks network-analysis python

Last synced: 20 Jun 2026

https://github.com/markblokpoel/mathlib

Last synced: 20 Jun 2026

https://github.com/TommyJones/tidylda

Implements an algorithim for Latent Dirichlet Allocation using style conventions from the [tidyverse](https://style.tidyverse.org/) and [tidymodels](https://tidymodels.github.io/model-implementation-principles/index.html).

Last synced: 20 Jun 2026

https://github.com/tsipkens/atems

A MATLAB codebase to analyze TEM images of soot, which includes new methods associated with this project and a compilation of other pre-existing methods into a single package.

aerosols aggregates image-processing particle-diameter particle-size-distribution soot tem tem-images transmission-electron-microscopy

Last synced: 20 Jun 2026

https://github.com/CLIMADA-project/climada_python

CLIMADA is a free and open-source software framework for climate risk assessment and adaptation option appraisal.

Last synced: 20 Jun 2026

https://github.com/hydroframe/hf_hydrodata

Last synced: 20 Jun 2026

https://github.com/USEPA/SSN2

SSN2: Spatial Modeling on Stream Networks in R

Last synced: 20 Jun 2026

https://github.com/hippylib/soupy

Stochastic Optimization under Uncertainty in Python.

Last synced: 20 Jun 2026

https://github.com/mjcarley/nbi/

Nystrom Boundary Integral codes for Laplace and Helmholtz problems

Last synced: 20 Jun 2026

https://github.com/slimgroup/InvertibleNetworks.jl

A Julia framework for invertible neural networks

bayesian-inference deep-invertible-networks deep-learning invertible-1x1-convolutions invertible-neural-networks julia julia-language machine-learning normalizing-flow normalizing-flows

Last synced: 20 Jun 2026

https://github.com/xianggebenben/GraphSL

Graph Source Localization Library

inverse-problems source-localization

Last synced: 20 Jun 2026

https://github.com/IonRepo/IonDiff

Unsupervised identification and analysis of ion-hopping events in solid state electrolytes.

Last synced: 20 Jun 2026

https://github.com/airexlab/fastvpinns

FastVPINNs - A tensor-driven acceleration of VPINNs for complex geometries

deep-learning inverse-problems neural-network partial-differential-equations physics-informed-neural-networks pinn scientific-machine-learning tensorflow2

Last synced: 20 Jun 2026

https://github.com/AtrCheema/SeqMetrics

Various errors for tabular/structured/time-series data

errors loss performance-metrics score

Last synced: 20 Jun 2026

https://github.com/mrazomej/AutoEncoderToolkit.jl

Julia package with several functions to train and analyze Autoencoder-based neural networks

Last synced: 20 Jun 2026

https://github.com/paucablop/chemotools

Integrate your chemometric tools with the scikit-learn API 🧪 🤖

artificial-intelligence autoencoders chemometrics deep-learning hacktoberfest ir-spectroscopy machine-learning multivariate-analysis nir-spectroscopy python raman-spectroscopy scikit-learn sklearn spectra spectroscopy

Last synced: 20 Jun 2026

https://github.com/ORNL/Equilipy

Open-source python package for multicomponent multiphase equilibrium CALPHAD calculations

calphad python

Last synced: 20 Jun 2026

https://github.com/AkchurinDA/Fortuna.jl

General-purpose package for structural and system reliability analysis purely written in the Julia programming language.

structural-engineering structural-reliability system-reliability uncertainty-quantification

Last synced: 20 Jun 2026

https://github.com/Mavrogiannis-Ioannis/dsmmR

Last synced: 20 Jun 2026

https://github.com/fairdataihub/SODA-for-SPARC

Simplifying data curation for researchers funded by the NIH SPARC initiative

curation mac sparc-dataset ubuntu windows

Last synced: 21 Jun 2026

https://github.com/flatironinstitute/cppdlr/

Discrete Lehmann representation of imaginary time Green's functions

Last synced: 20 Jun 2026

https://github.com/fladd/ScanSessionTool

(f)MRI scan session documentation and archiving

Last synced: 20 Jun 2026

https://github.com/suchanek/proteusPy

A package for the modeling and analysis of proteins of known structure

biophysics structural

Last synced: 20 Jun 2026

https://github.com/NERC-CEH/RMAVIS

A R Shiny application for the assignment of vegetation survey plot data to vegetation classification communities with additional exploratory analyses.

Last synced: 20 Jun 2026

https://github.com/CodeEagle22/SIRITVIS/

Last synced: 20 Jun 2026

https://github.com/COSIMA/regional-mom6/

Automatic generation of regional configurations of the Modular Ocean Model 6 (MOM6) in Python

mom6 ocean-modelling python regional-model

Last synced: 20 Jun 2026

https://github.com/EdwardBerman/shopt

[Astronomical Journal 2024] Efficient Point-spread Function Modeling with ShOpt.jl: A PSF Benchmarking Study with JWST NIRCam Imaging

astrophysics julia jwst point-spread-function weak-lensing

Last synced: 20 Jun 2026

https://github.com/BrownDwarf/gollum

A microservice for programmatic access to precomputed synthetic spectral model grids in astronomy

astronomy astrophysics physics python science spectroscopy stars

Last synced: 20 Jun 2026

https://github.com/Exo-TiC/ExoTiC-LD

Limb-darkening package to calculate the coefficients for specific instruments, stars, and wavelength ranges

Last synced: 20 Jun 2026

https://github.com/HinodeXRT/xrtpy

Last synced: 20 Jun 2026

https://github.com/koide3/small_gicp

Efficient and parallel algorithms for point cloud registration [C++, Python]

cpp icp multi-threading open3d pcl point-cloud-regstration pointcloud python registration scan-matching

Last synced: 20 Jun 2026

https://github.com/arjunsavel/cortecs

Compressed representations of opacity for radiative transfer!

astronomy atmospheres exoplanets radiative-transfer

Last synced: 20 Jun 2026

https://github.com/lahovniktadej/gatree

Evolutionary decision trees

decision-tree evolutionary-algorithm genetic-algorithm machine-learning

Last synced: 20 Jun 2026

https://github.com/BikeNetKit/superblockify

Source code for superblockify

geospatial gis network-analysis osmnx superblocks transportation-network urban-data-science urban-mobility urban-planning

Last synced: 20 Jun 2026

https://github.com/automl/amltk

A build-it-yourself AutoML Framework

Last synced: 20 Jun 2026

https://github.com/samwaseda/mamonca

Last synced: 20 Jun 2026

https://github.com/ec-jrc/nrt

Near Real Time monitoring of satellite image time-series

anomalies-detection datacube forest-disturbances monitoring sentinel-2

Last synced: 20 Jun 2026

https://github.com/bbye98/mdcraft

A Python assistant for performing and analyzing molecular dynamics simulations of soft matter systems

Last synced: 20 Jun 2026

https://github.com/padster/pyNeuroTrace

Python code for processing neural timeseries

analytics neuroscience timeseries

Last synced: 20 Jun 2026

https://github.com/bessagroup/f3dasm

Framework for Data-Driven Design & Analysis of Structures & Materials (F3DASM)

computational-mechanics data-driven design-of-experiments framework machine-learning materials-science

Last synced: 20 Jun 2026

https://github.com/aadya940/chainopy

ChainoPy: A Python Library for Discrete Time Markov Chain based stochastic analysis

bayesian-data-analysis bayesian-inference bayesian-statistics data-analysis data-science deep-learning forecasting machine-learning markov-chain markov-model markov-process time-series time-series-analysis

Last synced: 20 Jun 2026

https://github.com/BlueBrain/BlueCelluLab

Biologically detailed neural network simulations and analysis API

api biology brain cell circuit connection emodel network neural-network neuron neuroscience python simulation

Last synced: 20 Jun 2026

https://github.com/bjmt/universalmotif

Motif manipulation functions for R.

motif-analysis motif-enrichment-analysis r sequence-logo

Last synced: 20 Jun 2026

https://github.com/elsoroka/Satisfiability.jl

Specify satisfiability modulo theories problems in Julia and use the SMT-LIB format to interact with SMT solvers.

satisfiability-modulo-theories smt-lib

Last synced: 20 Jun 2026

https://github.com/VegeWaterDynamics/motrainer

Distributed Measurement Operator Trainer for Data Assimilation Applications

data-assimilation distributed-computing kalman-filter machine-learning

Last synced: 20 Jun 2026

https://github.com/ropensci/rOPTRAM

Derive Soil Moisture Using the OPTRAM Algorithm

Last synced: 20 Jun 2026

https://github.com/GOBLIN-Proj/goblin_lite

A goblin tool for the generation of static land balance scenarios and environment

goblin

Last synced: 20 Jun 2026

https://github.com/project-asgard/asgard

Last synced: 20 Jun 2026

https://github.com/simpeg/aurora

software for processing natural source electromagnetic data

Last synced: 20 Jun 2026

https://github.com/akinremisa/rfsed

Package for standard and sediment correction receiver functions analysis

Last synced: 20 Jun 2026

https://github.com/mdtanker/polartoolkit

Helpful tools for polar researchers

antarctica arctic bedmachine bedmap cryosphere gmt greenland jupyter-notebook plotting polar profiles pygmt python

Last synced: 20 Jun 2026

https://github.com/openneuropet/PET2BIDS/

PET2BIDS helps you convert your PET data into BIDS! raw PET scanner files (e.g. ecat, dicom) and additional side files like .e.g excel sheets -- paper @JOSS https://doi.org/10.21105/joss.06067

bids converter json metadata

Last synced: 20 Jun 2026

https://github.com/karllark/dust_extinction

Astronomical Dust Extinction

astronomy astrophysics astropy dust dust-extinction extinction hacktoberfest

Last synced: 20 Jun 2026

https://github.com/Clinical-Genomics-Umea/fraggler

Last synced: 20 Jun 2026

https://github.com/Aminsinichi/wearable-hrv/

A Python package for the validation of heart rate and heart rate variability in wearables

heart-rate heart-rate-variability hrv psychophysiology python validation wearables

Last synced: 20 Jun 2026

https://github.com/opengeos/HyperCoast

A Python Package for Visualizing and Analyzing Hyperspectral Data in Coastal Environments

aviris coastal emit geospatial hyperspectral ipyleaflet ipywidgets leafmap nasa nasa-pace neon pace python

Last synced: 20 Jun 2026

https://github.com/EdgeVPNio/evio

Virtualized overlay networking for the fog. The Evio network spans the continuum, from the cloud to the edge, providing a virtual private layer 2 network suitable for edge devices in IoT workloads.

Last synced: 20 Jun 2026

https://github.com/WhaleConnect/whaleconnect

Cross-platform network communication software

Last synced: 20 Jun 2026

https://github.com/OpenEnergyPlatform/open-MaStR

A Python Package to Download and Process the German Power Plant and Energy System Registry Marktstammdatenregister (MaStR)

bnetza dataset datasets energy energy-data marktstammdatenregister oep open-energy-family python solar

Last synced: 20 Jun 2026

https://github.com/mzkhalid039/DWBuilder

Ferroelectric/Ferroelastic domain wall builder

atomic domain-walls ferroelectric-domains ferroelectrics interface-builder

Last synced: 20 Jun 2026

https://github.com/radicamc/exoTEDRF

Tools for end-to-end reduction of JWST exoplanet observations

atmosphere exoplanet jwst miri niriss nirspec soss spectroscopy teddorf

Last synced: 20 Jun 2026

https://github.com/ropensci/osmapiR

An R interface to OpenStreetMap API for fetching and saving data from/to the OpenStreetMap database

openstreetmap openstreetmap-api osm osmapi r r-package

Last synced: 20 Jun 2026

https://github.com/GeodynamicWorldBuilder/WorldBuilder/

World Builder: An initial conditions generator for geodynamic modeling

Last synced: 20 Jun 2026

https://gricad-gitlab.univ-grenoble-alpes.fr/deformvis/insarviz

Last synced: 20 Jun 2026

https://github.com/opnavlab/sonic

SONIC is an object-oriented optical navigation (OPNAV) toolkit written in MATLAB.

astrometry camera-calibration opnav projective-geometry triangulation

Last synced: 20 Jun 2026

https://github.com/SciML/DataInterpolations.jl

A library of data interpolation and smoothing functions

Last synced: 20 Jun 2026

https://github.com/marberts/piar

Price index aggregation in R

cran economics inflation official-statistics r r-package rstats statistics

Last synced: 20 Jun 2026

https://github.com/jacob-long/jtools

Tools for summarizing/visualizing regressions and other helpful stuff

r r-package social-sciences

Last synced: 20 Jun 2026

https://github.com/annagraff/densify

Last synced: 20 Jun 2026

https://github.com/Battery-Intelligence-Lab/dtw-cpp

DTWC++

dynamic-time-warping time-series-clustering

Last synced: 20 Jun 2026

https://github.com/Jingxuan97/nemesispy

Tools for modelling exoplanet spectra

exoplanet-analysis exoplanet-atmospheres exoplanets radiative-transfer

Last synced: 20 Jun 2026

https://github.com/flekschas/jupyter-scatter/

Interactive 2D scatter plot widget for Jupyter Lab and Notebook. Scales to millions of points!

jupyter-notebook-extension jupyterlab-extension scatter-plot visualization

Last synced: 20 Jun 2026

https://github.com/artefactory/choice-learn

Discrete choice modeling in Python with large datasets & single choice / basket models - Assortment & Pricing Optimization .

assortment choice choice-model choice-modeling conditional-logit-model deep discrete-choice-models gurobi learning machine ml model multinomial-logit neural-networks optimization or-tools pricing research-center rum tensorflow