https://github.com/changliao1025/pyflowline
A mesh independent river network generator for hydrologic models
earth-system-model gis graph hydrology river
Last synced: 20 Jun 2026
https://github.com/JustinYKC/FEPOPS
Python implementation of the FEPOPS molecular descriptors
Last synced: 20 Jun 2026
https://github.com/dieghernan/tidyterra
tidyverse and ggplot2 methods for terra spatial objects
cran cran-r ggplot-extension r r-package r-spatial rspatial rstats rstats-package terra
Last synced: 20 Jun 2026
https://github.com/ToyotaCRDL/mahos
Measurement Automation Handling and Orchestration System
Last synced: 20 Jun 2026
https://github.com/OlivierBinette/er-evaluation
An End-to-End Evaluation Framework for Entity Resolution Systems
author-name-disambiguation data-science deduplication disambiguation duplicate-detection entity-resolution evaluation fuzzy-matching inventor-name-disambiguation matching ml-evaluation ml-testing record-linkage statistics
Last synced: 20 Jun 2026
https://github.com/spiketools/spiketools
Tools for analyzing spiking data from single-neuron recodings.
data-analysis neuroscience python single-unit spike-analysis spikes
Last synced: 20 Jun 2026
https://github.com/orbisgis/lczexplore
climate-change environment geoclimate r-spatial
Last synced: 20 Jun 2026
https://github.com/sandialabs/pvOps
A set of documented functions for supporting operations research of photovoltaic energy systems.
scr-2609 snl-data-analysis snl-visualization
Last synced: 20 Jun 2026
https://github.com/scikit-tda/DREiMac
Dimensionality Reduction with Eilenberg-MacLane Coordinates
dimensionality-reduction manifold-learning topological-data-analysis
Last synced: 20 Jun 2026
https://github.com/espnet/espnet
End-to-End Speech Processing Toolkit
chainer deep-learning end-to-end kaldi machine-translation pytorch singing-voice-synthesis speaker-diarization speech-enhancement speech-recognition speech-separation speech-synthesis speech-translation spoken-language-understanding text-to-speech voice-conversion
Last synced: 20 Jun 2026
https://github.com/introlab/opentera
OpenTera - Open TeleRehabilitation Server and Micro-Services
flask healthcare iot micro-services python redis rehab robotics sensors server telehealth teleoperation telepresence telerehabilitation twisted videoconference webrtc
Last synced: 20 Jun 2026
https://gitlab.com/habermann_lab/phasik
Scientific tools for extracting cyclic data via hierarchical clustering
Last synced: 20 Jun 2026
https://github.com/r3w0p/bobocep
A fault-tolerant Complex Event Processing engine designed for edge computing in Internet of Things systems.
complex-event-processing distributed-systems edge-computing fault-tolerance internet-of-things
Last synced: 20 Jun 2026
https://github.com/NLESC-JCER/QMCTorch
Pytorch Implementation of Real Space Quantum Monte Carlo Simulations of Molecular Systems
Last synced: 20 Jun 2026
https://github.com/2decomp-fft/2decomp-fft
The 2DECOMP&FFT library provides access to a slabs and pencil decompositions as well as FFTs.
fast-fourier-transform finite-difference-method pencil-decomposition
Last synced: 20 Jun 2026
https://github.com/NeotomaDB/neotoma2
Repository for the updated neotoma R package.
earthcube neotoma nsf paleoecology r rstats
Last synced: 20 Jun 2026
https://github.com/HoBeZwe/SphericalScattering.jl
This package provides semi-analytical solutions to the scattering of time harmonic and static electromagnetic fields from spherical objects.
dipole electromagnetics fitzgerald hertzian julia mie-scattering mie-series plane-wave ring-current scattering sphere spherical spherical-waves time-harmonic
Last synced: 20 Jun 2026
https://github.com/LMBooth/pybci
Create real-time BCI's with the LSL, PyTorch, SKLearn and TensorFlow packages.
bci brain-computer-interface hmi human-computer-interaction human-machine-interface labstreaminglayer lsl machine-learning python python-brain-computer-interface pytorch sklearn tensorflow
Last synced: 20 Jun 2026
https://github.com/jrkerns/pylinac
An image analysis library for medical physics
image-analysis image-processing medical-physics python radiation-oncology
Last synced: 20 Jun 2026
https://github.com/CyclotronResearchCentre/bidsme
Flexible bidsificator for multimodal datasets
bids brainvision dicom eeg mri-data nifti
Last synced: 20 Jun 2026
https://github.com/OpenWaterAnalytics/EPyT/
EPyT: An EPANET-Python Toolkit for Smart Water Network Simulations
epanet epanet-matlab-toolkit epanet-python-toolkit network python simulation water
Last synced: 20 Jun 2026
https://github.com/Box-Tools/BoxKit
A Python library to manage analysis of block-structured simulation datasets.
Last synced: 20 Jun 2026
https://github.com/UNSW-CEEM/NEMSEER
A package for downloading and handling forecasts for the National Electricity Market (NEM) from the Australian Energy Market Operator (AEMO).
aemo australia energy forecast national-electricity-market nem nemweb pasa pre-dispatch python
Last synced: 20 Jun 2026
https://github.com/sebastien-plutniak/archeoviz
Visualisation, Exploration, and Web Communication of Archaeological Spatial Data
archaeology archeology data-visualization r r-package rstats
Last synced: 20 Jun 2026
https://github.com/anderslogg/geco
A collection of solvers for the Einstein-Vlasov equations
axisymmetric einstein-vlasov fem fenics general-relativity vlasov-poisson
Last synced: 20 Jun 2026
https://github.com/pudu-py/pudu
A Python library for explainability of machine learinng algorithms in an agnostic, deterministic, and simple way.
Last synced: 20 Jun 2026
https://github.com/the-rccg/hw2d
Reference implementation for the Hasegawa-Wakatani model of plasma turbulence inside nuclear fusion reactors in two dimensions
fluid-dynamics fluid-simulation fusion plasma-physics simulations
Last synced: 20 Jun 2026
https://github.com/lys-devel/lys
Interactive multi-dimensional data analysis and visualization
Last synced: 20 Jun 2026
https://github.com/samirmartins/pydaq
Data Acquisition and Experimental Analysis with Python and Graphical User Interface
arduino arduino-library graphical-user-interface national-instruments nidaq nidaqmx pyside6 python real-datasets step-response
Last synced: 20 Jun 2026
https://github.com/jonescompneurolab/hnn-core
Simulation and optimization of neural circuits for MEG/EEG source estimates
computational-modeling eeg meg neuron-simulator
Last synced: 20 Jun 2026
https://github.com/cmelab/flowerMD
Flexible Library of Organic Workflows and Extensible Recipes for Molecular Dynamics.
hoomd-blue molecular-dynamics molecular-dynamics-simulation mosdef-hub polymer simulation
Last synced: 20 Jun 2026
https://github.com/Libensemble/libensemble
A Python toolkit for coordinating asynchronous and dynamic ensembles of calculations.
Last synced: 20 Jun 2026
https://github.com/parafields/parafields
Parallel Parameter Field Generator for Python
hacktoberfest iwr-hacktoberfest
Last synced: 20 Jun 2026
https://github.com/adrientaudiere/MiscMetabar
R package MiscMetabar: Miscellaneous functions for metabarcoding analysis
amplicon amplicon-sequencing biodiversity-informatics ecology illumina metabarcoding ngs-analysis package r r-package visualization
Last synced: 20 Jun 2026
https://github.com/MaceKuailv/seaduck
A python package that interpolates data from ocean dataset from both Eulerian and Lagrangian perspective.
Last synced: 20 Jun 2026
https://github.com/OSeMOSYS/otoole
OSeMOSYS Tools for Energy
energy energy-system energy-system-modelling osemosys
Last synced: 20 Jun 2026
https://github.com/pvlib/pvlib-python
A set of documented functions for simulating the performance of photovoltaic energy systems.
photovoltaic python renewable-energy renewables solar-energy
Last synced: 20 Jun 2026
https://github.com/xarray-contrib/xeofs
Comprehensive EOF analysis in Python with xarray: A versatile, multidimensional, and scalable tool for advanced climate data analysis
climate-science dask dimensionality-reduction eof-analysis pattern-recognition pca xarray
Last synced: 20 Jun 2026
https://github.com/castelao/GSW-rs
Unofficial Gibbs Sea Water Oceanographic Toolbox of TEOS-10 in Rust
data ocean ocean-sciences oceanography rust
Last synced: 20 Jun 2026
https://github.com/QuantEcon/QuantEcon.py
A community based Python library for quantitative economics
computational-economics economics python
Last synced: 20 Jun 2026
https://github.com/HRDAG/verdata
Una herramienta para el uso y análisis de los datos de Conflicto armado en Colombia resultantes del proyecto conjunto JEP-CEV-HRDAG.
armed-conflict capture-recapture colombia multiple-imputation multiple-systems-estimation rstats
Last synced: 20 Jun 2026
https://github.com/materialsproject/jobflow
jobflow is a library for writing computational workflows.
workflows
Last synced: 20 Jun 2026
https://github.com/omeka-s-modules/Datascribe
An Omeka S module for the transcription of structured data.
omeka omeka-s
Last synced: 20 Jun 2026
https://github.com/rajarshi008/Scarlet
Tool for learning linear temporal logic formulas using combinatorial approach
Last synced: 20 Jun 2026
https://github.com/vivekjoshy/openskill.py
Multiplayer Rating System. No Friction.
elo openskill openskill-py pypy python ranking ranking-system rating rating-system
Last synced: 20 Jun 2026
https://github.com/umr-amap/StormR
Funtions to quantify and map the tropical storms and cyclones’ winds characteristics'
cyclones-behaviour r tropical-storms
Last synced: 20 Jun 2026
https://github.com/gbouras13/dnaapler
Reorients assembled microbial sequences
Last synced: 20 Jun 2026
https://github.com/kstenio/libssa/
Laser Induced Breakdown Spectroscopy spectra analyser - LIBSsa
Last synced: 20 Jun 2026
https://github.com/ropensci/dwctaxon
R package for working with Darwin Core Taxon data
database r-package rstats
Last synced: 20 Jun 2026
https://github.com/LiBuchauer/cellanneal
User-friendly bulk RNAseq deconvolution using simulated annealing
Last synced: 20 Jun 2026
https://github.com/SMTG-Bham/easyunfold
Band structure unfolding made easy!
ab-initio band-structure-unfolding computational-chemistry computational-materials-science defects dft disorder electronic-structure symmetry-breaking unfolding vasp
Last synced: 20 Jun 2026
https://github.com/daniellerch/aletheia
An open-source toolbox for steganalysis
Last synced: 20 Jun 2026
https://github.com/marchirschvogel/ambit
FEniCSx-based cardiovascular multi-physics solver
Last synced: 20 Jun 2026
https://github.com/mendezVKI/SPICY_VKI
The repository contains the codes linked to the SPICY project (Super-resolution and Pressure from Image Velocimetry)
Last synced: 20 Jun 2026
https://github.com/muellerj2/netroles
A Java library for role equivalence analysis in networks
java network-analysis role-analysis role-equivalence
Last synced: 20 Jun 2026
https://github.com/zillow/quantile-forest
Quantile Regression Forests compatible with scikit-learn.
machine-learning prediction-intervals python quantile-regression quantile-regression-forests random-forest scikit-learn-api uncertainty-estimation
Last synced: 20 Jun 2026
https://github.com/illinois-or-research-analytics/cm_pipeline
Pipeline that uses an improved version of CM for generating well-connected graph clusters
Last synced: 20 Jun 2026
https://github.com/BohndiekLab/patato
PATATO: A Python PhotoAcoustic Tomography Analysis Toolkit
Last synced: 20 Jun 2026
https://github.com/materialsproject/pymatgen-analysis-defects
Defect analysis modules for pymatgen
Last synced: 20 Jun 2026
https://github.com/akikuno/cstag
Python module to manipulate and visualize minimap2's cs tag
bioinformatics cstag minimap2 python sam sequence
Last synced: 20 Jun 2026
https://github.com/jakelangham/kestrel/
Software for simulations of sediment-laden Earth surface flows
debris-flow fluid-simulation geophysical-fluid-dynamics granular-flow morphodynamics natural-hazards-modelling shallow-water-equations
Last synced: 20 Jun 2026
https://github.com/MLMI2-CSSI/foundry
Simplifying the discovery and usage of machine-learning ready datasets in materials science and chemistry
chemistry data-science datasets machine-learning materials-science
Last synced: 20 Jun 2026
https://github.com/pyroll-project/pyroll-core
PyRoll rolling simulation framework - core library.
groove-rolling materials metal-forming pyroll python rolling simulation
Last synced: 20 Jun 2026
https://github.com/matthias-mayr/Cartesian-Impedance-Controller
A C++ implementation of Cartesian impedance control for torque-controlled manipulators with ROS 2 & 1 bindings.
compliant-control franka-emika franka-panda gazebo iiwa kuka-iiwa kuka-lbr-iiwa manipulators robotics ros
Last synced: 20 Jun 2026
https://github.com/sonoUnoTeam/sonoUno-desktop
SonoUno is a sonification software for astronomical data presented on a table (txt or csv files). The software is being developed based on the study of other software, standards of accessibility like the ISO 9241-171:2008 (Guidance on software accessibility) and theoretical framework based on literature review and end user tests.
Last synced: 20 Jun 2026
https://github.com/RECeSS-EU-Project/stanscofi/
Package for STANdard drug Screening by COllaborative FIltering. Performs benchmarks against datasets and SotA algorithms, and implements training, validation and testing procedures.
collaborative-filtering drug-repurposing open-science python science-reproducibility
Last synced: 20 Jun 2026
https://github.com/libAtoms/matscipy
Materials science with Python at the atomic-scale
Last synced: 20 Jun 2026
https://github.com/soft-matter-theory-at-icmab-csic/chitin_builder
Chitin builder: A code to build chitin atomistic structures in Visual Molecular Dynamics (VMD)
chitin md vmd
Last synced: 20 Jun 2026
https://github.com/misken/hillmaker
Occupancy analysis by time of day and day of week, with Python
Last synced: 20 Jun 2026
https://github.com/mpl-extensions/mpl-interactions
Sliders to control matplotlib and other interactive goodies. Works in any interactive backend and even uses ipywidgets when in a Jupyter notebook
ipympl jupyter jupyter-widgets jupyterlab matplotlib python
Last synced: 20 Jun 2026
https://github.com/tdep-developers/tdep
The Temperature Dependent Effective Potentials (TDEP) code
Last synced: 20 Jun 2026
https://github.com/alejandrojuria/tightbinder
General purpose Slater-Koster tight-binding library for electronic structure calculations
alloys band-structure condensed-matter-physics dft-fit disorder electronic-structure physics python simulation slater-koster solid-state-physics tight-binding topology
Last synced: 20 Jun 2026
https://github.com/pprachas/fenics_arclength
A Riks arclength solver implemented in FEniCS
fenics finite-element-analysis finite-element-method numerical-continuation python solid-mechanics-codes
Last synced: 20 Jun 2026
https://github.com/jbferet/prospect
R package for the simulation of leaf optical properties based on their biochemical and biophysical properties using the PROSPECT leaf model. A tutorial can be found on the gitlab website
leaf leaf-traits physical-modeling prospect spectroscopy
Last synced: 20 Jun 2026
https://github.com/CODES-group/opyrability
Python-based Process Operability Package
Last synced: 20 Jun 2026
https://github.com/demonico85/cleaving
Lammps Package for cleaving calculations USER-PACKAGE
Last synced: 20 Jun 2026
https://github.com/Mmasoud1/HistoJS
HistoJS: Web-Based Analytical Tool for Multiplexed Images. Limited Github Online Demo 👇
cell-cell-interaction cell-segmentation digital-slide-archive image-processing mibiscope multichannel multiplexed-imaging multiplexed-imaging-analysis ome-tiff phenotyping proteomics proteomics-data-analysis single-cell spatial-biology spatial-data-analysis whole-slide-imaging
Last synced: 20 Jun 2026
https://github.com/DavAug/chi
Chi is an open source Python package which is designed for PKPD modelling and model-informed precision dosing (MIPD).
bayesian-inference mipd model-informed-precision-dosing parameter-estimation pharmacodynamics pharmacokinetics pkpd pkpd-modelling python
Last synced: 20 Jun 2026
https://gitlab.com/tum-ciip/elsa
elsa - an elegant framework for tomographic reconstruction
Last synced: 21 Jun 2026
https://gitlab.com/tue-umphy/software/parmesan
**P**ython **A**tmospheric **R**esearch package for **ME**teorological Time**S**eries and Turbulence **AN**alysis
analysis data gas meteorology python
Last synced: 20 Jun 2026
https://github.com/lskatz/fasten
:construction_worker: Fasten toolkit, for streaming operations on fastq files
bioinformatics fastq-files rust
Last synced: 20 Jun 2026
https://github.com/czimm79/MicroTracker.jl
Microbot tracking and analysis with Julia.
Last synced: 20 Jun 2026
https://github.com/WMD-group/PyTASER
Python package to simulate differential absorption spectra of crystals from first principles
computational-chemistry materials-science semiconductor-physics solar-fuel spectroscopy
Last synced: 20 Jun 2026
https://github.com/idaholab/moose
Multiphysics Object Oriented Simulation Environment
amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation
Last synced: 20 Jun 2026
https://github.com/kuadrat/growR
R implementation of the grassland model ModVege.
agronomy grass grassland modelling simulation-modeling
Last synced: 20 Jun 2026
https://github.com/cremerlab/hplc-py
A Python utility for the processing and quantification of chromatography data
analytical-chemistry chromatography-analysis hplc
Last synced: 20 Jun 2026
https://github.com/CHOP-CGTInformatics/REDCapTidieR
Makes it easy to read REDCap Projects into R
r redcap redcap-api tidy-data
Last synced: 20 Jun 2026
https://github.com/kinisi-dev/kinisi
A Python package for estimating diffusion properties from molecular dynamics simulations.
diffusion molecular-dynamics python
Last synced: 20 Jun 2026
https://github.com/FrederikLizakJohansen/DebyeCalculator
A vectorised implementation of the Debye Scattering Equation on CPU and GPU
Last synced: 20 Jun 2026
https://github.com/fieldtrip/fieldtrip
The MATLAB toolbox for MEG, EEG and iEEG analysis
analysis beamformer bids brain connectivity dipole donders ecog eeg fieldtrip ieeg matlab meg neuroimaging neuroscience seeg statistics time-frequency
Last synced: 20 Jun 2026
