https://github.com/galizia-lab/pyview
GUI + API for processing and visualizing Calcium imaging data. Largely based on the IDL software "VIEW" developed by Giovanni Galizia. Implemented in Python by Ajayrama Kumaraswamy
Last synced: 21 Jun 2026
https://github.com/markheckmann/OpenRepGrid.ic
shiny app for interpretive clustering of repgrids:
clustering constructs grid repertory repgrid shiny
Last synced: 21 Jun 2026
https://github.com/difuture-lmu/dsBinVal
ROC-GLM and calibration analysis for DataSHIELD
auc calibration datashield distributed-computing roc
Last synced: 21 Jun 2026
https://github.com/blind-contours/CVtreeMLE
:deciduous_tree: :dart: Cross Validated Decision Trees with Targeted Maximum Likelihood Estimation
causal-effects causal-inference decision-trees exposure-mixtures machine-learning robust-statistics statistics targeted-learning variable-importance
Last synced: 21 Jun 2026
https://github.com/rivasiker/PhaseTypeR
General-purpose phase-type functions
Last synced: 21 Jun 2026
https://github.com/TomHilder/wakeflow
Generate and manipulate semi-analytic models of planet wakes
analytical astronomy astronomy-astrophysics astrophysics modelling numerical planet-formation protoplanetary-discs protoplanetary-disks python
Last synced: 21 Jun 2026
https://github.com/pnnl/copper
Performance curve generator for building energy simulation
building energy hvac simulation
Last synced: 22 Jun 2026
https://github.com/thermohub/thermofun
A code for calculating the standard state thermodynamic properties at a given temperature and pressure.
chemical-reactions enthalpy entropy equation-of-state geochemical-data geochemical-modeling geochemistry gibbs-energy heat-capacity reaction substance thermodynamic-properties thermodynamics thermodynamics-models
Last synced: 21 Jun 2026
https://github.com/skiptoniam/ppmData
quasi-random quadrature scheme generation for Poisson point process modelling
Last synced: 22 Jun 2026
https://github.com/jlacko/RCzechia
A package providing Czech shapefiles - LAU & NUTS regions, municipalities, rivers etc. - in R friendly format for analysis & visualization
czech-republic r shapefile
Last synced: 21 Jun 2026
https://github.com/JuliaGraphs/MultilayerGraphs.jl
A Julia package for the creation, manipulation and analysis of the structure, dynamics and functions of multilayer graphs.
complex-networks complex-systems discrete-mathematics graph graph-algorithms graph-theory graph-theory-algorithms graph-theory-analysis graphs julia julia-language julia-package multilayer-graphs multilayer-network multilayer-networks multiplex-networks network network-analysis network-science networks
Last synced: 21 Jun 2026
https://github.com/baxmittens/DistributedSparseGrids.jl
An hierarchical adaptive sparse-grid implementation in the julia language
Last synced: 21 Jun 2026
https://github.com/Deltares/hydromt
HydroMT: Automated and reproducible model building and analysis
geoscience hydrodynamics hydrology modeling
Last synced: 22 Jun 2026
https://github.com/ImperialCollegeLondon/wsi
WSIMOD is a software for simulating water quality and quantity
hacktoberfest hydrology integrated-modelling pollution python wastewater water-quality
Last synced: 21 Jun 2026
https://github.com/kingyin3613/RingsPy
A Python automated geometric generation tool that generates 3D meshes of prismatic cellular solids with radial growth rules based on Voronoi diagrams.
Last synced: 21 Jun 2026
https://github.com/dazhwu/pydynpd
This python package estimates dynamic panel data model using difference GMM and system GMM.
arellano-bond data dynamic dynamic-panel-data panel system-gmm
Last synced: 21 Jun 2026
https://github.com/LuisScoccola/persistable
density-based clustering for exploratory data analysis based on multi-parameter persistence
cluster-analysis clustering clustering-algorithm machine-learning machine-learning-algorithms topological-data-analysis unsupervised-learning
Last synced: 21 Jun 2026
https://github.com/biocircuits/bioscrape/
BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)
chemical-reaction-networks crn cython parameter-identification python simulation stochastic-simulation-algorithm
Last synced: 22 Jun 2026
https://github.com/pyccel/pyccel/
Python extension language using accelerators
dsl fortran hpc mpi openacc openmp python python3 sympy transpiler
Last synced: 22 Jun 2026
https://github.com/kazewong/flowMC
Normalizing-flow enhanced sampling package for probabilistic inference in Jax
jax mcmc normalizing-flows stat
Last synced: 21 Jun 2026
https://github.com/openmsi/openmsistream
Materials data streaming applications, written in Python using Apache Kafka, with a focus on deployment in laboratory environments
Last synced: 21 Jun 2026
https://github.com/Artelia/NIMPHS
Blender add-on. Numerous Instruments to Manipulate and Post-process Hydraulic Simulations (OpenFOAM, TELEMAC).
blender blender-addon computational-fluid-dynamics geophysical-fluid-dynamics openfoam post-processing telemac-mascaret
Last synced: 21 Jun 2026
https://github.com/OnroerendErfgoed/atramhasis
An online SKOS editor
app pypi-package python skos thesaurus vocabulary
Last synced: 22 Jun 2026
https://github.com/stillwater-sc/universal
Large collection of number systems providing custom arithmetic for mixed-precision algorithm development and optimization for AI, Machine Learning, Computer Vision, Signal Processing, CAE, EDA, control, optimization, estimation, and approximation.
arbitrary-precision arbitrary-precision-arithmetic arbitrary-precision-floats arbitrary-precision-integers arithmetic artificial-intelligence c-plus-plus digital-signal-processing embedded-systems fixed-point-arithmetic floating-point-arithmetic half-precision integer-arithmetic interval-arithmetic octa-precision posit-arithmetic quad-precision quarter-precision rational-arithmetic
Last synced: 21 Jun 2026
https://github.com/karlotness/adrt
Fast approximate discrete Radon transform for NumPy arrays
Last synced: 21 Jun 2026
https://github.com/UM-Bridge/umbridge
UM-Bridge (the UQ and Model Bridge) provides a unified interface for numerical models that is accessible from virtually any programming language or framework.
Last synced: 22 Jun 2026
https://github.com/CouncilDataProject/speakerbox
Speakerbox: Fine-tune Audio Transformers for speaker identification.
audio-classification speaker-id speaker-identification transformers
Last synced: 21 Jun 2026
https://github.com/TNEL-UCSD/autolfads-deploy
Deployment strategies for AutoLFADS
Last synced: 21 Jun 2026
https://gitlab.com/jesseds/apav
APAV (Atom Probe Analysis and Visualization) is a Python library for the analysis and visualization of atom probe tomography experiments.
Atom Probe Field Evaporation data analysis science tomography
Last synced: 21 Jun 2026
https://github.com/SharmaLlama/ticktack
An open-source carbon box model implementation built on JAX.
Last synced: 21 Jun 2026
https://github.com/ABM4ALL/Melodie
A general framework for developing agent-based models in Python.
Last synced: 21 Jun 2026
https://github.com/neuroneural/brainchop
Brainchop: In-browser 3D MRI rendering and segmentation
3d-segmentation deep-learning frontend-app javascript medical-imaging mri mri-segmentation neuroimaging pyodide tensorflowjs three-js
Last synced: 22 Jun 2026
https://github.com/grburgess/ronswanson
Ron Swanson builds tables for 3ML
3ml astromodels data-analysis interpolation python ron-swanson spectral-fitting
Last synced: 21 Jun 2026
https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener
Converting irregularly spaced time series, such as eletronic health records, into dataframes for tabular classification.
electronic-healthcare-data irregular-time-series machine-learning python python3 time-series-analysis
Last synced: 21 Jun 2026
https://github.com/polca/unfold
UNpacking For scenariO-based Lca Databases
ecoinvent premise prospective scenario
Last synced: 21 Jun 2026
https://github.com/SwiftVISA/SwiftVISASwift
A Swift backend for communicating to instruments over TCPIP over the VISA protocol.
Last synced: 21 Jun 2026
https://github.com/ciclope-microFE/ciclope
Computed Tomography to Finite Elements
biomechanics computed-tomography engineering finite-elements python simulation
Last synced: 22 Jun 2026
https://github.com/obertscheiderfhwn/RTMsim
RTMsim - A Julia module for filling simulations in Resin Transfer Moulding
Last synced: 21 Jun 2026
https://github.com/mscaudill/openseize
Digital Signal Processing for Big EEGs
big-data eeg seizure signal-processing
Last synced: 21 Jun 2026
https://github.com/FitSNAP/FitSNAP
Software for generating machine-learning interatomic potentials for LAMMPS
Last synced: 21 Jun 2026
https://github.com/tylertrimble/viswaternet
A Python package for easy generation and customization of water distribution network visualizations.
Last synced: 21 Jun 2026
https://github.com/husseinaluie/FlowSieve
FlowSieve coarse-graining code base
Last synced: 21 Jun 2026
https://github.com/Yingjie4Science/SDGdetector
A novel R package that can identify and visualize 17 Sustainable Development Goals and associated 169 Targets in text
cran r r-package sdg sdgs sustainability sustainable-development-goals text-mining
Last synced: 21 Jun 2026
https://github.com/icesat2py/icepyx
Python tools for obtaining and working with ICESat-2 data
closember community-driven hacktoberfest icesat-2 python3
Last synced: 21 Jun 2026
https://github.com/ropensci/PostcodesioR
API wrapper around postcodes.io - free UK postcode lookup and geocoder
api-wrapper geocoder geographic-data peer-reviewed postcode r r-package rstats uk
Last synced: 21 Jun 2026
https://github.com/MDAnalysis/solvation-analysis
A comprehensive tool for analyzing liquid solvation structure.
Last synced: 21 Jun 2026
https://gitlab.com/dlr-ve/esy/amiris/amiris
**A**gent-based **M**arket model for the **I**nvestigation of **R**enewable and **I**ntegrated energy **S**ystems
agent-based-modeling electricity market modelling energy transition
Last synced: 21 Jun 2026
https://gitlab.com/fame-framework/fame-io
Python package for input file creation for FAME models and digestion of FAME outputs. [Documentation](https://fame-framework.gitlab.io/fame-io/)
FAME
Last synced: 21 Jun 2026
https://gitlab.com/fame-framework/fame-core
Core library of FAME written in Java
FAME
Last synced: 21 Jun 2026
https://github.com/stsievert/salmon/
A tool to collect triplet queries
active-learning crowdsourcing embedding machine-learning triplet-loss triplets
Last synced: 21 Jun 2026
https://github.com/panagiotisanagnostou/HiPart
Hierarchical divisive clustering algorithm execution, visualization and Interactive visualization.
bisecting-k-means bisecting-kmeans bisecting-kmeans-clustering cluster clustering contributions-welcome data-analysis data-mining data-science data-visualization divisive-clustering hierarchical-clustering machine-learning package pddp pyhton python python-package python3 visualization
Last synced: 21 Jun 2026
https://github.com/open-atmos/PySDM
Pythonic particle-based (super-droplet) cloud microphysics (and aqueous-chemistry) package with box, parcel & 1D/2D prescribed-flow examples in Python, Julia and Matlab
atmospheric-modelling atmospheric-physics cuda gpu gpu-computing monte-carlo-simulation numba nvrtc particle-system physics-simulation pint pypi-package python research simulation thrust
Last synced: 21 Jun 2026
https://github.com/earth-chris/elapid
Species distribution modeling tools, including a python implementation of Maxent
biodiversity-informatics biogeography geospatial maxent niche-modelling species-distribution-modelling
Last synced: 21 Jun 2026
https://github.com/qiskit-community/qiskit-experiments
Qiskit Experiments
qiskit
Last synced: 22 Jun 2026
https://github.com/linuxscout/pyarabic
pyarabic
arabic-language nlp-library text-processing
Last synced: 21 Jun 2026
https://github.com/tornede/py_experimenter
The PyExperimenter is a tool for the automatic execution of experiments, e.g. for machine learning (ML), capturing corresponding results in a unified manner in a database.
database executor experiments python
Last synced: 21 Jun 2026
https://github.com/ReactiveBayes/RxInfer.jl
Julia package for automated Bayesian inference on a factor graph with reactive message passing
bayesian-inference inference-engine julia-language machine-learning message-passing probabilistic-programming variational-inference
Last synced: 22 Jun 2026
https://github.com/astro-informatics/sleplet
Slepian Scale-Discretised Wavelets in Python
hacktoberfest manifolds python slepian-functions sphere wavelets
Last synced: 22 Jun 2026
https://git.ligo.org/asimov/asimov
The science automation assistant. Asimov provides tools to organise and automate data analysis.
analysis asimov automation ligo data grid (ldg) parameter estimation pe pipelines workflows
Last synced: 21 Jun 2026
https://github.com/jeremiah-corrado/fem_2d
A rust library for 2D Finite Element Method computations
Last synced: 21 Jun 2026
https://github.com/gpantel/MolPainter/
A Tool for Drawing Complex Planar Molecular Systems of Arbitrary Composition and Placement
Last synced: 21 Jun 2026
https://github.com/Cascella-Group-UiO/HyMD
Massively parallel hybrid particle-field molecular dynamics in Python.
chemistry coarse-grained hybrid-particle-field molecular-dynamics physics
Last synced: 21 Jun 2026
https://github.com/PyPSA/linopy
Linear optimization with N-D labeled arrays in Python
cbc cplex glpk gurobi linear-optimisation linear-optimization optimisation optimization python xarray xpress
Last synced: 22 Jun 2026
https://github.com/rikenbit/nnTensor
R package for Non-negative Tensor Decomposition
Last synced: 22 Jun 2026
https://github.com/aksholokhov/pysr3
SciKit-Learn compatible library for training mixed-effects models.
Last synced: 21 Jun 2026
https://github.com/parallelwindfarms/byteparsing
Parser for mixed binary/ASCII data in Python
Last synced: 22 Jun 2026
https://github.com/HLasse/TextDescriptives
A Python library for calculating a large variety of metrics from text
dependency-distance descriptive-statistics nlp python readability readability-scores spacy spacy-extension statistics syntactic-analysis
Last synced: 21 Jun 2026
https://github.com/pyvisa/pyvisa
A Python package with bindings to the "Virtual Instrument Software Architecture" VISA library, in order to control measurement devices and test equipment via GPIB, RS232, or USB.
Last synced: 22 Jun 2026
https://github.com/tum-esm/pyra
Pyra: Automated EM27/SUN Greenhouse Gas Measurements
autonomous bruker camtracker cli climate docusaurus em27 emissions hacktoberfest monitoring mypy opus python sensor spectroscopy tailwindcss tauri typescript
Last synced: 21 Jun 2026
https://github.com/konradhoeffner/hdt
Library for the Header Dictionary Triples (HDT) compression file format for RDF data.
hdt rdf rust
Last synced: 22 Jun 2026
https://github.com/schochastics/graphlayouts
new layout algorithms for network visualizations in R
ggraph graph-algorithms network-analysis network-visualization r
Last synced: 22 Jun 2026
https://github.com/PaulRitsche/DL_Track_US
This repositories contains code for automatic analysis of human lower limb ultrasonography images.
Last synced: 22 Jun 2026
https://github.com/fzi-forschungszentrum-informatik/TSInterpret
An Open-Source Library for the interpretability of time series classifiers
counterfactual-explanations explainable-ai explainable-artificial-intelligence explainable-ml feature-attribution interpretability interpretable-machine-learning interpretable-ml time-series
Last synced: 21 Jun 2026
https://github.com/prashjet/popkinmocks
Create mock IFU datacubes for stellar population and kinematic modelling.
astronomy astrophysics datacube galaxy python spectroscopy stellar-kinematics stellar-populations
Last synced: 21 Jun 2026
https://gitlab.com/cosmograil/starred
A two-channel deconvolution method with Starlet regularization. The code also features a PSF reconstruction algorithm.
Deconvolution astronomy psf python
Last synced: 21 Jun 2026
https://github.com/PoliUniLu/cora
This repository contains all files for the CORA software package.
Last synced: 21 Jun 2026
https://github.com/mwalmsley/zoobot
Classifies galaxy morphology with Bayesian CNN
Last synced: 22 Jun 2026
https://github.com/muctadir/lama
LaMa, short for Labelling Machine, is an web application developed for aiding in thematic analysis of qualitative data.
angular docker python qualitative-analysis qualitative-research text-labeling thematic-analysis
Last synced: 21 Jun 2026
https://plmlab.math.cnrs.fr/lmrs/statistique/smmR
An R Package for Estimation and Simulationof Discrete-time semi-Markov Models
Last synced: 21 Jun 2026
https://github.com/AgrDataSci/climatrends
Climate Variability Indices for Ecological Modelling
climate-data climatology timeseries-analysis
Last synced: 21 Jun 2026
https://github.com/trichter/yam
Yet another monitoring tool using correlations of ambient noise
Last synced: 21 Jun 2026
https://github.com/harrispopgen/mutyper
Ancestral k-mer mutation types for SNP data
Last synced: 21 Jun 2026
https://github.com/julie-forman-kay-lab/SPyCi-PDB
Structural Python (Back) Calculator Interface for PDBs
Last synced: 21 Jun 2026
https://github.com/jspsych/jspsych
Create behavioral experiments in a browser using JavaScript
experimental-design experiments javascript jspsych psychology psychology-experiments research science
Last synced: 22 Jun 2026
https://github.com/elliohow/fMRI_ROI_Analysis_Tool
An analysis tool that uses per-voxel statistical maps in conjunction with FSL atlases to create per-region statistical maps. Current usage includes the creation of regional maps of temporal signal to noise ratio.
brain-imaging fmri fmri-preprocessing fmri-roi-analysis neuroimaging python
Last synced: 21 Jun 2026
https://github.com/graphnet-team/graphnet
A Deep learning library for neutrino telescopes
astrophysics deep-learning gpu graph-neural-network high-energy-physics machine-learning neural-network neutrino-oscillations neutrino-physics neutrinos particle-physics physics-analysis python pytorch
Last synced: 21 Jun 2026
https://github.com/smith-tinkerlab/repytah
repytah is a python package that builds aligned hierarchies for sequential data streams where repetitions have meaning (like music)
mir music-information-retrieval
Last synced: 21 Jun 2026
https://github.com/nialov/fractopo
fractopo is a Python package with tools for validating and analyzing lineament and fracture trace maps
analysis fractopo fracture geology geometry python spatial-analysis topology
Last synced: 22 Jun 2026
https://github.com/AngryMaciek/hypercomplex
Abstract & fast header-only C++ template library for lattice-based cryptosystems in high-dimensional algebras
algebra cryptography mathematics post-quantum-cryptography precision
Last synced: 21 Jun 2026
https://github.com/tibordome/cosmic_profiles
Implements 3D point cloud algorithms for estimation and fitting of shape and density profiles
astronomy cosmological-simulations point-cloud
Last synced: 21 Jun 2026
https://github.com/alawryaguila/multi-view-AE
Multi-view-AE: An extensive collection of multi-modal autoencoders implemented in a modular, scikit-learn style framework.
autoencoder multi-modal multi-modal-autoencoder multi-modal-variational-autoencoder multivae multiview multiviewae mvae representation-learning variational-autoencoder
Last synced: 21 Jun 2026
https://github.com/webbjj/clustertools
A Python package with tools for analysing star clusters.
Last synced: 22 Jun 2026
